Wall clock time and date at job start Fri Apr 10 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 127.25105 * 2 1 4 4 N 1.35031 * 107.23228 * 180.02562 * 3 2 1 5 5 H 0.96989 * 124.88546 * 179.97438 * 4 3 2 6 6 N 1.28469 * 110.22845 * 359.75245 * 4 3 2 7 7 C 1.31807 * 110.07510 * 0.41766 * 6 4 3 8 8 C 1.47712 * 126.51973 * 179.85556 * 7 6 4 9 9 O 1.21576 * 119.99845 * 179.68499 * 8 7 6 10 10 N 1.34773 * 119.99916 * 359.68945 * 8 7 6 11 11 C 1.48256 * 127.73496 * 0.02562 * 10 8 7 12 12 C 1.54713 * 104.66667 * 141.17142 * 11 10 8 13 13 C 1.53043 * 104.47320 * 23.66905 * 12 11 10 14 14 C 1.53897 * 111.34584 * 238.27415 * 13 12 11 15 15 C 1.55141 * 101.45104 * 273.28782 * 14 13 12 16 16 N 1.47544 * 105.06775 * 324.20635 * 15 14 13 17 17 C 1.36934 * 125.67052 * 203.97311 * 16 15 14 18 18 H 1.08007 * 119.99661 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00452 * 0.02562 * 17 16 15 20 20 N 1.31616 * 119.99555 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00162 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47156 * 90.00129 * 21 19 17 23 23 H 1.48499 * 109.47124 * 209.99779 * 21 19 17 24 24 H 1.48498 * 109.47436 * 329.99892 * 21 19 17 25 25 C 1.47602 * 108.51853 * 23.94003 * 16 15 14 26 26 C 1.48450 * 127.73381 * 179.97438 * 10 8 7 27 27 H 1.08993 * 109.47102 * 269.97225 * 1 2 3 28 28 H 1.09000 * 109.47194 * 29.97369 * 1 2 3 29 29 H 1.08999 * 109.47120 * 149.96976 * 1 2 3 30 30 H 1.08004 * 126.38170 * 0.05188 * 3 2 1 31 31 H 1.08994 * 110.40232 * 22.36929 * 11 10 8 32 32 H 1.09004 * 110.49466 * 260.00809 * 11 10 8 33 33 H 1.09007 * 110.43052 * 264.92182 * 12 11 10 34 34 H 1.08996 * 110.54182 * 142.47417 * 12 11 10 35 35 H 1.08993 * 111.02825 * 155.24316 * 14 13 12 36 36 H 1.08994 * 111.06241 * 31.34343 * 14 13 12 37 37 H 1.09002 * 110.34155 * 83.13671 * 15 14 13 38 38 H 1.09000 * 110.33754 * 205.28261 * 15 14 13 39 39 H 0.97008 * 120.00075 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.94166 * 238.66138 * 25 16 15 41 41 H 1.08994 * 109.96600 * 117.41366 * 25 16 15 42 42 H 1.08999 * 110.46395 * 99.71364 * 26 10 8 43 43 H 1.09001 * 110.46324 * 337.13417 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1729 -0.0011 6 7 3.5998 -0.6694 0.0043 7 6 2.3635 -1.1264 -0.0007 8 6 1.9506 -2.5446 -0.0007 9 8 0.7697 -2.8339 0.0001 10 7 2.8828 -3.5179 -0.0013 11 6 4.3572 -3.3621 -0.0017 12 6 4.8695 -4.4809 0.9361 13 6 3.7577 -5.5325 0.9200 14 6 3.2159 -5.7965 2.3360 15 6 4.1969 -6.8863 2.8429 16 7 4.5007 -7.7103 1.6573 17 6 4.9247 -9.0122 1.6770 18 1 5.1215 -9.5301 0.7499 19 6 5.1017 -9.6663 2.8885 20 7 4.8614 -9.0352 4.0182 21 14 5.6808 -11.4420 2.9153 22 1 7.1646 -11.4781 2.9628 23 1 5.1306 -12.1240 4.1142 24 1 5.2077 -12.1356 1.6905 25 6 4.2698 -6.8955 0.4484 26 6 2.6634 -4.9861 -0.0009 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5143 30 1 2.0220 2.1138 0.0008 31 1 4.6359 -2.3829 0.3874 32 1 4.7550 -3.4977 -1.0075 33 1 5.0139 -4.0950 1.9453 34 1 5.7989 -4.9037 0.5548 35 1 2.1948 -6.1758 2.2996 36 1 3.2759 -4.8994 2.9520 37 1 5.1071 -6.4271 3.2285 38 1 3.7232 -7.4931 3.6146 39 1 4.9847 -9.4924 4.8649 40 1 3.5237 -7.3743 -0.1858 41 1 5.2028 -6.7727 -0.1015 42 1 2.7766 -5.3886 -1.0075 43 1 1.6768 -5.2238 0.3969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041268663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:42 Heat of formation + Delta-G solvation = 79.862110 kcal Electronic energy + Delta-G solvation = -25212.584018 eV Core-core repulsion = 21681.531838 eV Total energy + Delta-G solvation = -3531.052180 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.87039 -39.94927 -38.15895 -35.61096 -33.21059 -32.74139 -31.53609 -30.13359 -29.14500 -28.35698 -27.31016 -25.83713 -24.47115 -22.80155 -22.42661 -20.81380 -20.23885 -19.25546 -18.64159 -18.15884 -16.97065 -16.55298 -16.11258 -15.47591 -15.18409 -14.76135 -14.11313 -14.01845 -13.82277 -13.64209 -13.31797 -13.10919 -12.97116 -12.72089 -12.47095 -12.27525 -12.01847 -11.73664 -11.39801 -11.28043 -11.02059 -10.89663 -10.80892 -10.65791 -10.14577 -10.01926 -9.90385 -9.85115 -9.68253 -9.62507 -9.40259 -9.06943 -8.60175 -8.49673 -6.78296 -5.60517 -3.01954 1.45103 1.89770 2.58794 3.09674 3.41757 3.42767 3.47677 3.49798 4.24694 4.52476 4.53705 4.79697 4.95521 5.03599 5.13337 5.16992 5.32008 5.48084 5.52716 5.54766 5.66220 5.69782 5.81927 5.92452 5.97152 6.00141 6.00990 6.13884 6.18353 6.34429 6.36203 6.43229 6.51270 6.62444 6.72417 6.79787 6.82158 6.93645 7.56653 7.57844 7.67015 7.71175 7.91410 8.25931 8.40887 9.26423 9.87136 10.53400 11.43187 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.003023 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.237653 B = 9261.369113 C = 9470.477060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.146 4.146 3 C -0.022 4.022 4 N -0.385 5.385 5 H 0.446 0.554 6 N -0.255 5.255 7 C -0.003 4.003 8 C 0.619 3.381 9 O -0.535 6.535 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.115 4.115 13 C -0.084 4.084 14 C -0.130 4.130 15 C 0.155 3.845 16 N -0.604 5.604 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.151 3.849 26 C 0.124 3.876 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.183 0.817 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.011 0.989 38 H 0.104 0.896 39 H 0.251 0.749 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 22.332 -8.466 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C -0.166 4.166 4 N -0.098 5.098 5 H 0.290 0.710 6 N -0.092 5.092 7 C -0.164 4.164 8 C 0.406 3.594 9 O -0.411 6.411 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.153 4.153 13 C -0.085 4.085 14 C -0.168 4.168 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.025 3.975 26 C 0.002 3.998 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.200 0.800 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.654 21.696 -8.320 23.388 hybrid contribution 0.226 -0.182 0.046 0.294 sum -2.428 21.515 -8.274 23.178 Atomic orbital electron populations 1.20184 0.88029 1.03048 1.02513 1.20407 0.97658 0.90378 1.07214 1.22684 0.84217 1.00488 1.09207 1.43306 1.08546 1.04606 1.53382 0.71000 1.73585 1.23040 0.93486 1.19043 1.21871 0.89396 0.94964 1.10140 1.16419 0.84412 0.81876 0.76727 1.90772 1.16323 1.82377 1.51636 1.48875 1.07218 1.06642 1.71234 1.22775 0.78910 1.01100 0.99940 1.22470 0.98216 0.94676 0.99962 1.21579 0.94476 0.95541 0.96937 1.22977 1.00204 0.99846 0.93821 1.21952 0.94126 0.89727 0.91206 1.44650 1.78794 1.09520 1.00054 1.19075 1.36809 0.86116 0.92844 0.90519 1.24779 1.02189 0.98527 0.95277 1.69814 1.55218 1.35416 0.96651 0.86080 0.78234 0.84261 0.76970 1.21724 1.21710 1.20723 1.21223 0.96839 0.88615 0.90852 1.22317 1.00058 0.77860 0.99612 0.91366 0.92041 0.89827 0.79983 0.88332 0.91465 0.90941 0.90082 0.92077 0.92480 0.97110 0.87818 0.93810 0.95632 0.95672 0.91015 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.93 36.00 0.36 -0.44 16 2 C -0.15 -1.62 6.25 -104.40 -0.65 -2.27 16 3 C -0.02 -0.16 11.97 -17.17 -0.21 -0.37 16 4 N -0.39 -2.91 6.83 30.47 0.21 -2.70 16 5 H 0.45 1.55 8.96 -190.45 -1.71 -0.16 16 6 N -0.26 -2.93 9.30 33.42 0.31 -2.62 16 7 C 0.00 -0.04 7.00 -82.76 -0.58 -0.62 16 8 C 0.62 10.03 7.92 -12.39 -0.10 9.93 16 9 O -0.54 -9.87 15.39 5.30 0.08 -9.79 16 10 N -0.61 -9.38 3.33 -170.71 -0.57 -9.95 16 11 C 0.10 1.29 6.70 -2.17 -0.01 1.28 16 12 C -0.12 -1.77 6.24 -25.81 -0.16 -1.93 16 13 C -0.08 -1.48 0.79 -153.94 -0.12 -1.60 16 14 C -0.13 -2.59 5.93 -25.13 -0.15 -2.73 16 15 C 0.15 3.81 5.81 -2.34 -0.01 3.79 16 16 N -0.60 -15.54 3.42 -170.15 -0.58 -16.12 16 17 C -0.22 -6.17 10.29 -15.06 -0.15 -6.33 16 18 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.13 6.40 -3.41 -0.02 3.10 16 26 C 0.12 2.00 6.08 -2.91 -0.02 1.98 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.02 6.72 -51.93 -0.35 0.67 16 30 H 0.18 0.61 8.06 -52.48 -0.42 0.18 16 31 H 0.10 1.26 5.55 -51.93 -0.29 0.97 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 34 H 0.08 1.24 7.33 -51.93 -0.38 0.86 16 35 H 0.06 1.23 7.75 -51.93 -0.40 0.83 16 36 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 2.90 5.88 -51.93 -0.31 2.59 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.03 0.53 7.78 -51.93 -0.40 0.12 16 41 H 0.03 0.51 7.38 -51.93 -0.38 0.13 16 42 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 43 H 0.08 1.47 7.36 -51.93 -0.38 1.09 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -34.08 340.52 -9.27 -43.35 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.46 Total: -1.26 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.93 Total: 3.34 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.07 Total: -58.01 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.08 -9.27 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041268663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.207 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds