Wall clock time and date at job start Fri Apr 10 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 127.25105 * 2 1 4 4 N 1.35031 * 107.23228 * 180.02562 * 3 2 1 5 5 H 0.96989 * 124.88546 * 179.97438 * 4 3 2 6 6 N 1.28469 * 110.22845 * 359.75245 * 4 3 2 7 7 C 1.31807 * 110.07510 * 0.41766 * 6 4 3 8 8 C 1.47712 * 126.51973 * 179.85556 * 7 6 4 9 9 O 1.21576 * 119.99845 * 179.68499 * 8 7 6 10 10 N 1.34773 * 119.99916 * 359.68945 * 8 7 6 11 11 C 1.48256 * 127.73496 * 0.02562 * 10 8 7 12 12 C 1.54713 * 104.66667 * 141.17142 * 11 10 8 13 13 C 1.53043 * 104.47320 * 23.66905 * 12 11 10 14 14 C 1.53897 * 111.34584 * 238.27415 * 13 12 11 15 15 C 1.55141 * 101.45104 * 273.28782 * 14 13 12 16 16 N 1.47544 * 105.06775 * 324.20635 * 15 14 13 17 17 C 1.36934 * 125.67052 * 203.97311 * 16 15 14 18 18 H 1.08007 * 119.99661 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00452 * 0.02562 * 17 16 15 20 20 N 1.31616 * 119.99555 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00162 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47156 * 90.00129 * 21 19 17 23 23 H 1.48499 * 109.47124 * 209.99779 * 21 19 17 24 24 H 1.48498 * 109.47436 * 329.99892 * 21 19 17 25 25 C 1.47602 * 108.51853 * 23.94003 * 16 15 14 26 26 C 1.48450 * 127.73381 * 179.97438 * 10 8 7 27 27 H 1.08993 * 109.47102 * 269.97225 * 1 2 3 28 28 H 1.09000 * 109.47194 * 29.97369 * 1 2 3 29 29 H 1.08999 * 109.47120 * 149.96976 * 1 2 3 30 30 H 1.08004 * 126.38170 * 0.05188 * 3 2 1 31 31 H 1.08994 * 110.40232 * 22.36929 * 11 10 8 32 32 H 1.09004 * 110.49466 * 260.00809 * 11 10 8 33 33 H 1.09007 * 110.43052 * 264.92182 * 12 11 10 34 34 H 1.08996 * 110.54182 * 142.47417 * 12 11 10 35 35 H 1.08993 * 111.02825 * 155.24316 * 14 13 12 36 36 H 1.08994 * 111.06241 * 31.34343 * 14 13 12 37 37 H 1.09002 * 110.34155 * 83.13671 * 15 14 13 38 38 H 1.09000 * 110.33754 * 205.28261 * 15 14 13 39 39 H 0.97008 * 120.00075 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.94166 * 238.66138 * 25 16 15 41 41 H 1.08994 * 109.96600 * 117.41366 * 25 16 15 42 42 H 1.08999 * 110.46395 * 99.71364 * 26 10 8 43 43 H 1.09001 * 110.46324 * 337.13417 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1729 -0.0011 6 7 3.5998 -0.6694 0.0043 7 6 2.3635 -1.1264 -0.0007 8 6 1.9506 -2.5446 -0.0007 9 8 0.7697 -2.8339 0.0001 10 7 2.8828 -3.5179 -0.0013 11 6 4.3572 -3.3621 -0.0017 12 6 4.8695 -4.4809 0.9361 13 6 3.7577 -5.5325 0.9200 14 6 3.2159 -5.7965 2.3360 15 6 4.1969 -6.8863 2.8429 16 7 4.5007 -7.7103 1.6573 17 6 4.9247 -9.0122 1.6770 18 1 5.1215 -9.5301 0.7499 19 6 5.1017 -9.6663 2.8885 20 7 4.8614 -9.0352 4.0182 21 14 5.6808 -11.4420 2.9153 22 1 7.1646 -11.4781 2.9628 23 1 5.1306 -12.1240 4.1142 24 1 5.2077 -12.1356 1.6905 25 6 4.2698 -6.8955 0.4484 26 6 2.6634 -4.9861 -0.0009 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5143 30 1 2.0220 2.1138 0.0008 31 1 4.6359 -2.3829 0.3874 32 1 4.7550 -3.4977 -1.0075 33 1 5.0139 -4.0950 1.9453 34 1 5.7989 -4.9037 0.5548 35 1 2.1948 -6.1758 2.2996 36 1 3.2759 -4.8994 2.9520 37 1 5.1071 -6.4271 3.2285 38 1 3.7232 -7.4931 3.6146 39 1 4.9847 -9.4924 4.8649 40 1 3.5237 -7.3743 -0.1858 41 1 5.2028 -6.7727 -0.1015 42 1 2.7766 -5.3886 -1.0075 43 1 1.6768 -5.2238 0.3969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041268663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:41 Heat of formation + Delta-G solvation = 57.043246 kcal Electronic energy + Delta-G solvation = -25213.573518 eV Core-core repulsion = 21681.531838 eV Total energy + Delta-G solvation = -3532.041680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.61699 -41.29750 -39.55592 -37.19971 -34.52235 -33.96468 -32.63711 -31.61664 -30.70546 -29.92037 -28.08941 -27.42293 -26.05906 -24.11582 -23.63402 -22.19342 -21.56695 -20.39476 -19.96139 -18.93928 -18.79280 -17.85619 -17.08607 -16.82980 -16.60202 -16.24248 -15.80269 -15.63605 -15.12779 -14.70691 -14.34281 -14.24769 -14.00192 -13.99949 -13.76818 -13.61942 -13.37197 -13.14562 -13.03854 -12.89001 -12.66685 -12.56272 -12.40413 -12.01260 -11.83574 -11.74307 -11.59837 -11.32084 -11.16187 -11.05697 -10.71525 -10.42815 -9.84804 -9.66230 -8.86388 -7.75072 -5.19149 0.52006 1.20552 1.47593 1.49622 1.58338 1.75564 2.22502 2.32795 2.51390 3.28371 3.36323 3.55111 3.65177 3.66394 3.85316 3.95158 4.11960 4.29296 4.32867 4.37710 4.51127 4.58160 4.61143 4.67471 4.70549 4.84218 4.90193 4.91027 4.93108 5.01058 5.04347 5.11114 5.19832 5.22071 5.36372 5.40809 5.49102 5.56500 5.63182 5.82896 6.20901 6.31408 6.49452 6.83775 7.11695 7.12177 7.79447 8.45050 9.27064 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.003023 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.237653 B = 9261.369113 C = 9470.477060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.177 4.177 3 C 0.011 3.989 4 N -0.364 5.364 5 H 0.465 0.535 6 N -0.267 5.267 7 C -0.038 4.038 8 C 0.612 3.388 9 O -0.570 6.570 10 N -0.610 5.610 11 C 0.107 3.893 12 C -0.111 4.111 13 C -0.073 4.073 14 C -0.116 4.116 15 C 0.162 3.838 16 N -0.626 5.626 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.070 4.070 20 N -0.951 5.951 21 Si 0.981 3.019 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.269 1.269 25 C 0.148 3.852 26 C 0.129 3.871 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.232 0.768 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.069 0.931 37 H -0.010 1.010 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.087 0.913 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 24.909 -9.986 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.187 4.187 3 C -0.134 4.134 4 N -0.080 5.080 5 H 0.314 0.686 6 N -0.105 5.105 7 C -0.197 4.197 8 C 0.400 3.600 9 O -0.449 6.449 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.149 4.149 13 C -0.074 4.074 14 C -0.155 4.155 15 C 0.037 3.963 16 N -0.352 5.352 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.809 3.191 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.023 3.977 26 C 0.006 3.994 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.008 0.992 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.105 0.895 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.784 24.297 -9.875 26.287 hybrid contribution -0.017 -0.886 0.507 1.021 sum -1.801 23.411 -9.368 25.280 Atomic orbital electron populations 1.20127 0.87938 1.03031 1.02271 1.20701 0.98286 0.90810 1.08949 1.23288 0.83029 1.01597 1.05519 1.43443 1.09821 1.03684 1.51046 0.68605 1.73451 1.22144 0.95341 1.19601 1.21632 0.90945 0.93995 1.13121 1.16907 0.84013 0.83146 0.75896 1.90741 1.17720 1.83207 1.53203 1.48935 1.08069 1.06029 1.71190 1.22796 0.77556 1.00739 1.00422 1.22429 0.97526 0.94513 1.00423 1.21438 0.95693 0.94917 0.95366 1.22794 0.98565 0.98623 0.95522 1.21665 0.93849 0.90205 0.90589 1.44937 1.78747 1.09572 1.01934 1.19476 1.36347 0.87410 0.93168 0.89912 1.25640 1.02924 1.02609 0.95033 1.70075 1.56342 1.36774 0.96902 0.85036 0.77603 0.79448 0.76993 1.21311 1.22195 1.19389 1.21396 0.97473 0.89434 0.89356 1.22150 0.98492 0.78923 0.99827 0.91746 0.88968 0.92880 0.75168 0.87227 0.89613 0.91410 0.89602 0.92740 0.91199 0.99172 0.91498 0.94462 0.95283 0.94477 0.89454 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.93 71.24 0.71 -0.72 16 2 C -0.18 -3.56 6.25 -19.72 -0.12 -3.68 16 3 C 0.01 0.11 11.97 83.54 1.00 1.11 16 4 N -0.36 -4.07 6.83 -57.51 -0.39 -4.46 16 5 H 0.47 1.16 8.96 -220.00 -1.97 -0.81 16 6 N -0.27 -5.47 9.30 -48.17 -0.45 -5.91 16 7 C -0.04 -0.99 7.00 42.46 0.30 -0.69 16 8 C 0.61 19.79 7.92 86.75 0.69 20.47 16 9 O -0.57 -21.68 15.39 -3.95 -0.06 -21.74 16 10 N -0.61 -18.38 3.33 -812.27 -2.70 -21.08 16 11 C 0.11 2.67 6.70 86.63 0.58 3.25 16 12 C -0.11 -3.26 6.24 31.19 0.19 -3.07 16 13 C -0.07 -2.54 0.79 -51.81 -0.04 -2.58 16 14 C -0.12 -4.73 5.93 31.63 0.19 -4.54 16 15 C 0.16 8.27 5.81 86.91 0.51 8.78 16 16 N -0.63 -32.76 3.42 -692.23 -2.37 -35.12 16 17 C -0.24 -13.34 10.29 84.03 0.86 -12.48 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 20 N -0.95 -57.89 10.09 21.65 0.22 -57.67 16 21 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.15 6.10 6.40 86.18 0.55 6.65 16 26 C 0.13 4.11 6.08 86.04 0.52 4.63 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.32 6.72 -2.39 -0.02 1.31 16 30 H 0.23 0.07 8.06 -2.91 -0.02 0.05 16 31 H 0.11 2.56 5.55 -2.39 -0.01 2.54 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 2.07 7.49 -2.38 -0.02 2.05 16 34 H 0.09 2.47 7.33 -2.39 -0.02 2.46 16 35 H 0.05 2.26 7.75 -2.39 -0.02 2.25 16 36 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.07 3.93 5.88 -2.39 -0.01 3.92 16 39 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 40 H 0.03 1.18 7.78 -2.39 -0.02 1.16 16 41 H 0.04 1.45 7.38 -2.39 -0.02 1.44 16 42 H 0.09 2.52 7.84 -2.39 -0.02 2.50 16 43 H 0.07 2.45 7.36 -2.39 -0.02 2.43 16 Total: -1.00 -77.33 340.52 1.74 -75.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.93 Total: 8.45 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.40 Total: 13.57 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.69 Total: -124.25 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.74 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.33 1.74 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041268663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.630 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds