Wall clock time and date at job start Fri Apr 10 2020 17:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30452 * 125.98644 * 2 1 4 4 N 1.39929 * 108.89565 * 179.97438 * 3 2 1 5 5 H 0.97004 * 125.75615 * 179.97438 * 4 3 2 6 6 C 1.34266 * 108.49183 * 359.75429 * 4 3 2 7 7 C 1.38042 * 107.41404 * 0.38971 * 6 4 3 8 8 C 1.47431 * 126.40971 * 179.87469 * 7 6 4 9 9 O 1.21607 * 119.99740 * 171.93447 * 8 7 6 10 10 N 1.34776 * 120.00435 * 351.93365 * 8 7 6 11 11 C 1.48249 * 127.73979 * 173.41950 * 10 8 7 12 12 C 1.54714 * 104.67245 * 141.21068 * 11 10 8 13 13 C 1.53044 * 104.47193 * 23.66827 * 12 11 10 14 14 C 1.53888 * 111.37497 * 121.00932 * 13 12 11 15 15 C 1.55131 * 101.45422 * 154.99525 * 14 13 12 16 16 N 1.47546 * 105.06899 * 324.21017 * 15 14 13 17 17 C 1.36931 * 125.67395 * 203.97015 * 16 15 14 18 18 H 1.08003 * 120.00324 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00080 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47425 * 90.00231 * 21 19 17 23 23 H 1.48506 * 109.47304 * 210.00176 * 21 19 17 24 24 H 1.48498 * 109.47229 * 330.00010 * 21 19 17 25 25 C 1.47599 * 108.51408 * 23.93783 * 16 15 14 26 26 C 1.48454 * 127.73253 * 353.44497 * 10 8 7 27 27 H 1.09000 * 109.47175 * 270.04237 * 1 2 3 28 28 H 1.09002 * 109.47031 * 30.04455 * 1 2 3 29 29 H 1.09003 * 109.46648 * 150.04157 * 1 2 3 30 30 H 1.07999 * 126.29293 * 180.24603 * 6 4 3 31 31 H 1.08997 * 110.39766 * 22.41419 * 11 10 8 32 32 H 1.09004 * 110.40006 * 260.01375 * 11 10 8 33 33 H 1.09000 * 110.43517 * 264.92663 * 12 11 10 34 34 H 1.08994 * 110.54033 * 142.46347 * 12 11 10 35 35 H 1.09002 * 111.02496 * 36.95470 * 14 13 12 36 36 H 1.09001 * 111.06290 * 273.06255 * 14 13 12 37 37 H 1.09003 * 110.34024 * 83.13595 * 15 14 13 38 38 H 1.08993 * 110.34375 * 205.28316 * 15 14 13 39 39 H 0.96998 * 119.99317 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.93947 * 238.65635 * 25 16 15 41 41 H 1.09004 * 109.96479 * 117.41614 * 25 16 15 42 42 H 1.09006 * 110.45921 * 99.67701 * 26 10 8 43 43 H 1.08999 * 110.46725 * 337.09888 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 0.0006 5 1 4.3842 1.2302 0.0004 6 6 3.6439 -0.6979 0.0064 7 6 2.3373 -1.1431 0.0006 8 6 1.8916 -2.5485 0.0012 9 8 0.7131 -2.8126 0.1435 10 7 2.7903 -3.5406 -0.1558 11 6 2.5577 -5.0008 -0.0494 12 6 3.4228 -5.6184 -1.1735 13 6 4.5133 -4.5764 -1.4331 14 6 5.9170 -5.1650 -1.2062 15 6 6.7849 -4.2484 -2.1079 16 7 5.9400 -3.9532 -3.2810 17 6 6.3938 -3.5901 -4.5208 18 1 5.6909 -3.3942 -5.3171 19 6 7.7572 -3.4739 -4.7544 20 7 8.6138 -3.7131 -3.7840 21 14 8.3762 -2.9779 -6.4455 22 1 8.4900 -1.4990 -6.5170 23 1 9.7086 -3.5889 -6.6838 24 1 7.4223 -3.4516 -7.4803 25 6 4.5254 -4.1159 -2.8925 26 6 4.2351 -3.4158 -0.4735 27 1 -0.3633 0.0008 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8904 -0.5132 30 1 4.5297 -1.3157 0.0121 31 1 1.5045 -5.2305 -0.2110 32 1 2.8822 -5.3673 0.9246 33 1 2.8250 -5.7751 -2.0713 34 1 3.8654 -6.5580 -0.8431 35 1 5.9651 -6.2014 -1.5405 36 1 6.2133 -5.0794 -0.1608 37 1 7.0370 -3.3279 -1.5813 38 1 7.6919 -4.7686 -2.4156 39 1 9.5665 -3.6323 -3.9474 40 1 4.0506 -4.8671 -3.5239 41 1 4.0016 -3.1647 -2.9872 42 1 4.8343 -3.5174 0.4314 43 1 4.4372 -2.4618 -0.9604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041529598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:46 Heat of formation + Delta-G solvation = 80.200413 kcal Electronic energy + Delta-G solvation = -25699.031934 eV Core-core repulsion = 22167.994424 eV Total energy + Delta-G solvation = -3531.037510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50989 -39.91857 -38.09856 -35.60898 -33.05068 -32.68395 -31.44795 -29.91520 -29.03353 -28.06604 -27.98124 -25.88572 -24.56774 -22.77684 -21.91564 -20.48995 -20.38613 -19.52520 -18.80332 -17.51384 -16.91480 -16.46836 -15.69178 -15.28137 -14.92180 -14.84400 -14.61307 -14.11229 -13.78641 -13.69123 -13.37989 -13.08814 -12.82795 -12.58725 -12.33281 -12.14940 -12.03074 -11.63426 -11.58557 -11.44613 -11.25958 -10.96784 -10.95772 -10.83334 -10.25534 -10.09074 -9.99224 -9.85111 -9.74857 -9.56921 -9.49888 -8.90249 -8.70985 -8.51719 -6.89668 -5.71740 -3.12800 1.47127 2.12621 2.60797 3.12481 3.35390 3.41470 3.42809 3.50401 4.40985 4.43953 4.58099 4.71672 4.73776 4.97805 5.11548 5.21098 5.30635 5.39327 5.41484 5.43498 5.63041 5.66578 5.67845 5.75434 5.81292 5.88139 5.92169 5.95968 6.05286 6.17527 6.31004 6.38826 6.44381 6.49619 6.55425 6.71208 6.79517 7.01276 7.39709 7.45952 7.56867 7.69951 7.78730 8.29227 8.35368 9.16158 9.76405 10.41509 11.32120 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.004479 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.732408 B = 6249.938175 C = 7341.790309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.133 3.867 3 N -0.304 5.304 4 N -0.460 5.460 5 H 0.445 0.555 6 C 0.103 3.897 7 C -0.287 4.287 8 C 0.617 3.383 9 O -0.549 6.549 10 N -0.621 5.621 11 C 0.109 3.891 12 C -0.120 4.120 13 C -0.083 4.083 14 C -0.132 4.132 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.150 3.850 26 C 0.107 3.893 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.197 0.803 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.106 0.894 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 1.705 10.729 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.035 4.035 3 N -0.127 5.127 4 N -0.164 5.164 5 H 0.290 0.710 6 C -0.050 4.050 7 C -0.301 4.301 8 C 0.407 3.593 9 O -0.429 6.429 10 N -0.354 5.354 11 C -0.013 4.013 12 C -0.159 4.159 13 C -0.084 4.084 14 C -0.171 4.171 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.025 3.975 26 C -0.016 4.016 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.213 0.787 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.357 2.972 10.692 14.516 hybrid contribution 1.111 -0.248 -0.933 1.472 sum -8.246 2.724 9.759 13.064 Atomic orbital electron populations 1.20303 0.85710 1.03856 1.03448 1.22444 0.97305 0.88652 0.95098 1.77121 0.86391 1.22513 1.26649 1.46142 1.07758 1.05640 1.56884 0.71037 1.23934 0.99750 0.85583 0.95685 1.20185 0.92138 0.94304 1.23507 1.16769 0.84218 0.82758 0.75522 1.90719 1.16186 1.83917 1.52028 1.48889 1.09852 1.06396 1.70283 1.22356 1.01021 0.79341 0.98599 1.22495 0.96556 0.98158 0.98654 1.21575 0.96177 0.94334 0.96327 1.23001 0.93829 1.00401 0.99868 1.21982 0.95102 0.94913 0.85356 1.44678 0.99141 1.80817 1.08424 1.19077 0.90897 1.38324 0.86621 0.90598 1.24751 0.95729 1.02167 0.97906 1.69790 1.01259 1.55773 1.30352 0.86100 0.78152 0.78054 0.83375 1.21708 1.21621 1.20690 1.21274 0.88285 0.97265 0.90720 1.22727 0.80514 1.00115 0.98213 0.90213 0.91093 0.88876 0.78708 0.90071 0.91336 0.90767 0.90134 0.91567 0.92047 0.97213 0.87634 0.93770 0.95493 0.96134 0.90797 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.85 36.01 0.35 -0.54 16 2 C 0.13 1.90 7.26 -82.02 -0.60 1.31 16 3 N -0.30 -4.24 12.63 33.90 0.43 -3.82 16 4 N -0.46 -5.31 7.29 30.85 0.22 -5.09 16 5 H 0.44 3.61 8.96 -182.72 -1.64 1.97 16 6 C 0.10 1.26 10.38 -16.56 -0.17 1.09 16 7 C -0.29 -4.17 6.06 -105.07 -0.64 -4.81 16 8 C 0.62 9.72 7.89 -12.52 -0.10 9.62 16 9 O -0.55 -9.79 15.28 5.27 0.08 -9.71 16 10 N -0.62 -8.77 3.33 -170.78 -0.57 -9.34 16 11 C 0.11 1.36 7.10 -2.18 -0.02 1.34 16 12 C -0.12 -1.54 6.31 -25.81 -0.16 -1.71 16 13 C -0.08 -1.27 0.79 -153.93 -0.12 -1.39 16 14 C -0.13 -2.17 5.90 -25.14 -0.15 -2.32 16 15 C 0.15 3.33 5.81 -2.34 -0.01 3.31 16 16 N -0.60 -14.52 3.42 -170.15 -0.58 -15.10 16 17 C -0.22 -5.93 10.29 -15.06 -0.15 -6.09 16 18 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -25.67 10.09 55.49 0.56 -25.11 16 21 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.15 2.97 6.37 -3.42 -0.02 2.95 16 26 C 0.11 1.45 4.57 -2.89 -0.01 1.44 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.22 6.74 -51.93 -0.35 0.87 16 30 H 0.20 2.03 5.06 -52.49 -0.27 1.77 16 31 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.00 7.41 -51.93 -0.38 0.61 16 34 H 0.08 0.91 7.62 -51.93 -0.40 0.52 16 35 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 36 H 0.06 0.85 7.65 -51.93 -0.40 0.46 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.11 2.69 5.88 -51.93 -0.31 2.38 16 39 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.03 0.55 7.49 -51.92 -0.39 0.16 16 41 H 0.02 0.43 7.63 -51.93 -0.40 0.03 16 42 H 0.07 0.87 7.59 -51.93 -0.39 0.47 16 43 H 0.09 1.26 4.57 -51.93 -0.24 1.02 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -32.37 338.03 -8.89 -41.26 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.21 Total: 1.47 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.90 Total: 3.83 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.06 Total: -58.44 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.37 -8.89 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041529598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.462 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds