Wall clock time and date at job start Fri Apr 10 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30452 * 125.98644 * 2 1 4 4 N 1.39929 * 108.89565 * 179.97438 * 3 2 1 5 5 H 0.97004 * 125.75615 * 179.97438 * 4 3 2 6 6 C 1.34266 * 108.49183 * 359.75429 * 4 3 2 7 7 C 1.38042 * 107.41404 * 0.38971 * 6 4 3 8 8 C 1.47431 * 126.40971 * 179.87469 * 7 6 4 9 9 O 1.21607 * 119.99740 * 171.93447 * 8 7 6 10 10 N 1.34776 * 120.00435 * 351.93365 * 8 7 6 11 11 C 1.48249 * 127.73979 * 173.41950 * 10 8 7 12 12 C 1.54714 * 104.67245 * 141.21068 * 11 10 8 13 13 C 1.53044 * 104.47193 * 23.66827 * 12 11 10 14 14 C 1.53888 * 111.37497 * 121.00932 * 13 12 11 15 15 C 1.55131 * 101.45422 * 154.99525 * 14 13 12 16 16 N 1.47546 * 105.06899 * 324.21017 * 15 14 13 17 17 C 1.36931 * 125.67395 * 203.97015 * 16 15 14 18 18 H 1.08003 * 120.00324 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00080 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47425 * 90.00231 * 21 19 17 23 23 H 1.48506 * 109.47304 * 210.00176 * 21 19 17 24 24 H 1.48498 * 109.47229 * 330.00010 * 21 19 17 25 25 C 1.47599 * 108.51408 * 23.93783 * 16 15 14 26 26 C 1.48454 * 127.73253 * 353.44497 * 10 8 7 27 27 H 1.09000 * 109.47175 * 270.04237 * 1 2 3 28 28 H 1.09002 * 109.47031 * 30.04455 * 1 2 3 29 29 H 1.09003 * 109.46648 * 150.04157 * 1 2 3 30 30 H 1.07999 * 126.29293 * 180.24603 * 6 4 3 31 31 H 1.08997 * 110.39766 * 22.41419 * 11 10 8 32 32 H 1.09004 * 110.40006 * 260.01375 * 11 10 8 33 33 H 1.09000 * 110.43517 * 264.92663 * 12 11 10 34 34 H 1.08994 * 110.54033 * 142.46347 * 12 11 10 35 35 H 1.09002 * 111.02496 * 36.95470 * 14 13 12 36 36 H 1.09001 * 111.06290 * 273.06255 * 14 13 12 37 37 H 1.09003 * 110.34024 * 83.13595 * 15 14 13 38 38 H 1.08993 * 110.34375 * 205.28316 * 15 14 13 39 39 H 0.96998 * 119.99317 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.93947 * 238.65635 * 25 16 15 41 41 H 1.09004 * 109.96479 * 117.41614 * 25 16 15 42 42 H 1.09006 * 110.45921 * 99.67701 * 26 10 8 43 43 H 1.08999 * 110.46725 * 337.09888 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 0.0006 5 1 4.3842 1.2302 0.0004 6 6 3.6439 -0.6979 0.0064 7 6 2.3373 -1.1431 0.0006 8 6 1.8916 -2.5485 0.0012 9 8 0.7131 -2.8126 0.1435 10 7 2.7903 -3.5406 -0.1558 11 6 2.5577 -5.0008 -0.0494 12 6 3.4228 -5.6184 -1.1735 13 6 4.5133 -4.5764 -1.4331 14 6 5.9170 -5.1650 -1.2062 15 6 6.7849 -4.2484 -2.1079 16 7 5.9400 -3.9532 -3.2810 17 6 6.3938 -3.5901 -4.5208 18 1 5.6909 -3.3942 -5.3171 19 6 7.7572 -3.4739 -4.7544 20 7 8.6138 -3.7131 -3.7840 21 14 8.3762 -2.9779 -6.4455 22 1 8.4900 -1.4990 -6.5170 23 1 9.7086 -3.5889 -6.6838 24 1 7.4223 -3.4516 -7.4803 25 6 4.5254 -4.1159 -2.8925 26 6 4.2351 -3.4158 -0.4735 27 1 -0.3633 0.0008 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8904 -0.5132 30 1 4.5297 -1.3157 0.0121 31 1 1.5045 -5.2305 -0.2110 32 1 2.8822 -5.3673 0.9246 33 1 2.8250 -5.7751 -2.0713 34 1 3.8654 -6.5580 -0.8431 35 1 5.9651 -6.2014 -1.5405 36 1 6.2133 -5.0794 -0.1608 37 1 7.0370 -3.3279 -1.5813 38 1 7.6919 -4.7686 -2.4156 39 1 9.5665 -3.6323 -3.9474 40 1 4.0506 -4.8671 -3.5239 41 1 4.0016 -3.1647 -2.9872 42 1 4.8343 -3.5174 0.4314 43 1 4.4372 -2.4618 -0.9604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041529598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:45 Heat of formation + Delta-G solvation = 58.866914 kcal Electronic energy + Delta-G solvation = -25699.957024 eV Core-core repulsion = 22167.994424 eV Total energy + Delta-G solvation = -3531.962600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53690 -41.11994 -39.39454 -37.08318 -34.45259 -33.96825 -32.71470 -31.40995 -30.33619 -29.39382 -28.96010 -27.42652 -26.07276 -24.06517 -22.96464 -22.13296 -21.55122 -20.54885 -20.10016 -18.83139 -18.50094 -17.61403 -16.80833 -16.78374 -16.36681 -16.04303 -15.89633 -15.50505 -15.25954 -14.88681 -14.66619 -14.23729 -13.91783 -13.75455 -13.73181 -13.51440 -13.21805 -13.07247 -13.00477 -12.75882 -12.71500 -12.55743 -12.40634 -12.05456 -12.00097 -11.77066 -11.39816 -11.38634 -11.14449 -10.87579 -10.69111 -10.57074 -9.98597 -9.59097 -8.83643 -7.75375 -5.17812 0.46216 1.04958 1.46827 1.47541 1.56004 1.68584 2.06874 2.38223 2.50028 3.32581 3.37692 3.59297 3.62151 3.63432 3.73244 3.84128 4.13269 4.17366 4.33202 4.35495 4.39417 4.45386 4.58517 4.75221 4.76262 4.77294 4.84128 4.88631 4.92363 4.96490 5.00122 5.13571 5.19269 5.22917 5.37900 5.44047 5.47605 5.49134 5.74553 5.89551 6.16559 6.37052 6.44436 6.58588 7.15503 7.20816 7.81752 8.45289 9.25236 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.004479 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.732408 B = 6249.938175 C = 7341.790309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.120 3.880 3 N -0.321 5.321 4 N -0.449 5.449 5 H 0.459 0.541 6 C 0.118 3.882 7 C -0.314 4.314 8 C 0.612 3.388 9 O -0.578 6.578 10 N -0.621 5.621 11 C 0.110 3.890 12 C -0.112 4.112 13 C -0.073 4.073 14 C -0.113 4.113 15 C 0.151 3.849 16 N -0.624 5.624 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.970 3.030 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.276 1.276 25 C 0.149 3.851 26 C 0.110 3.890 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.216 0.784 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.098 0.902 37 H -0.002 1.002 38 H 0.068 0.932 39 H 0.247 0.753 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.106 0.894 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 1.297 11.949 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 N -0.145 5.145 4 N -0.155 5.155 5 H 0.307 0.693 6 C -0.036 4.036 7 C -0.329 4.329 8 C 0.404 3.596 9 O -0.460 6.460 10 N -0.353 5.353 11 C -0.012 4.012 12 C -0.150 4.150 13 C -0.075 4.075 14 C -0.152 4.152 15 C 0.027 3.973 16 N -0.350 5.350 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.201 1.201 25 C 0.024 3.976 26 C -0.012 4.012 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.232 0.768 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.016 0.984 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.124 0.876 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.317 2.567 11.918 15.344 hybrid contribution 1.118 -0.105 -1.361 1.764 sum -8.198 2.463 10.557 13.592 Atomic orbital electron populations 1.20306 0.84784 1.03794 1.04099 1.22788 0.98263 0.88747 0.95024 1.77074 0.87308 1.22757 1.27313 1.46196 1.07690 1.05811 1.55791 0.69305 1.24158 0.99595 0.85843 0.94052 1.20292 0.93205 0.94028 1.25392 1.16951 0.84026 0.83408 0.75258 1.90696 1.17297 1.84399 1.53601 1.48912 1.09813 1.06966 1.69616 1.22500 1.00763 0.78214 0.99681 1.22459 0.95554 0.98368 0.98667 1.21456 0.96640 0.95752 0.93614 1.22855 0.92723 0.99009 1.00570 1.21826 0.94782 0.95081 0.85635 1.44944 1.01266 1.80632 1.08180 1.19340 0.91177 1.38158 0.88004 0.91201 1.25438 0.95943 1.02754 1.00956 1.70025 1.00987 1.56518 1.31634 0.85204 0.77372 0.77496 0.80013 1.21582 1.21781 1.20078 1.21394 0.85929 0.96495 0.93782 1.22749 0.80636 0.98843 0.98965 0.89187 0.89717 0.90244 0.76807 0.90633 0.88547 0.91668 0.87626 0.91341 0.88356 0.98416 0.91354 0.94344 0.96293 0.97332 0.87595 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 9.85 71.24 0.70 -0.99 16 2 C 0.12 3.35 7.26 43.51 0.32 3.66 16 3 N -0.32 -8.66 12.63 -46.68 -0.59 -9.25 16 4 N -0.45 -9.69 7.29 -56.31 -0.41 -10.10 16 5 H 0.46 6.66 8.96 -213.43 -1.91 4.75 16 6 C 0.12 2.68 10.38 84.27 0.87 3.55 16 7 C -0.31 -8.85 6.06 -20.15 -0.12 -8.97 16 8 C 0.61 18.64 7.89 86.67 0.68 19.33 16 9 O -0.58 -20.39 15.28 -4.05 -0.06 -20.45 16 10 N -0.62 -16.11 3.33 -812.50 -2.70 -18.81 16 11 C 0.11 2.39 7.10 86.63 0.61 3.01 16 12 C -0.11 -2.54 6.31 31.19 0.20 -2.34 16 13 C -0.07 -2.07 0.79 -51.81 -0.04 -2.11 16 14 C -0.11 -3.38 5.90 31.62 0.19 -3.20 16 15 C 0.15 6.58 5.81 86.91 0.50 7.09 16 16 N -0.62 -30.08 3.42 -692.24 -2.37 -32.45 16 17 C -0.24 -12.93 10.29 84.04 0.86 -12.07 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 19 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 20 N -0.94 -53.10 10.09 21.65 0.22 -52.88 16 21 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 C 0.15 5.82 6.37 86.18 0.55 6.37 16 26 C 0.11 2.68 4.57 86.05 0.39 3.07 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.10 6.74 -2.39 -0.02 2.09 16 30 H 0.22 3.93 5.06 -2.91 -0.01 3.92 16 31 H 0.08 1.76 7.85 -2.39 -0.02 1.75 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.62 7.41 -2.39 -0.02 1.60 16 34 H 0.11 1.92 7.62 -2.39 -0.02 1.91 16 35 H 0.07 2.05 7.90 -2.39 -0.02 2.03 16 36 H 0.10 2.27 7.65 -2.39 -0.02 2.25 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.07 3.52 5.88 -2.39 -0.01 3.50 16 39 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 40 H 0.02 0.77 7.49 -2.38 -0.02 0.75 16 41 H 0.01 0.36 7.63 -2.38 -0.02 0.34 16 42 H 0.11 1.98 7.59 -2.38 -0.02 1.96 16 43 H 0.08 2.09 4.57 -2.39 -0.01 2.07 16 Total: -1.00 -71.19 338.03 1.44 -69.75 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.87 Total: 13.93 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.19 Total: 13.71 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.85 Total: -123.50 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.19 1.44 -69.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041529598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.621 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds