Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30453 * 125.98966 * 2 1 4 4 N 1.39937 * 108.89543 * 179.97438 * 3 2 1 5 5 H 0.97000 * 125.75024 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.49406 * 359.74579 * 4 3 2 7 7 C 1.38044 * 107.41329 * 0.39793 * 6 4 3 8 8 C 1.47435 * 126.41035 * 179.87127 * 7 6 4 9 9 O 1.21604 * 119.99901 * 188.77313 * 8 7 6 10 10 N 1.34779 * 120.00101 * 8.77545 * 8 7 6 11 11 C 1.48300 * 127.04418 * 177.96157 * 10 8 7 12 12 C 1.55222 * 103.45812 * 218.52042 * 11 10 8 13 13 C 1.53395 * 102.50696 * 323.69599 * 12 11 10 14 14 C 1.53907 * 111.11643 * 259.61993 * 13 12 11 15 15 C 1.55140 * 101.44902 * 273.69298 * 14 13 12 16 16 N 1.47537 * 104.97284 * 324.25236 * 15 14 13 17 17 C 1.36945 * 125.66820 * 203.88507 * 16 15 14 18 18 H 1.08001 * 119.99855 * 173.06619 * 17 16 15 19 19 C 1.38811 * 120.00252 * 353.06206 * 17 16 15 20 20 N 1.31621 * 119.99554 * 4.45937 * 19 17 16 21 21 Si 1.86794 * 119.99972 * 184.45729 * 19 17 16 22 22 H 1.48505 * 109.47261 * 95.00029 * 21 19 17 23 23 H 1.48508 * 109.47075 * 214.99603 * 21 19 17 24 24 H 1.48493 * 109.47582 * 334.99974 * 21 19 17 25 25 C 1.47335 * 108.66260 * 23.90665 * 16 15 14 26 26 C 1.47845 * 127.00666 * 357.99071 * 10 8 7 27 27 H 1.09002 * 109.47206 * 270.04417 * 1 2 3 28 28 H 1.09004 * 109.47385 * 30.04415 * 1 2 3 29 29 H 1.09003 * 109.47294 * 150.04260 * 1 2 3 30 30 H 1.07999 * 126.29339 * 180.24314 * 6 4 3 31 31 H 1.09009 * 110.58947 * 100.03874 * 11 10 8 32 32 H 1.09000 * 110.77866 * 337.09785 * 11 10 8 33 33 H 1.08991 * 110.80422 * 205.43698 * 12 11 10 34 34 H 1.08998 * 110.96463 * 82.01589 * 12 11 10 35 35 H 1.08994 * 111.03289 * 31.73644 * 14 13 12 36 36 H 1.09000 * 111.02734 * 155.65679 * 14 13 12 37 37 H 1.08999 * 110.34238 * 205.38061 * 15 14 13 38 38 H 1.09004 * 110.42757 * 83.16890 * 15 14 13 39 39 H 0.97008 * 119.99581 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.97482 * 238.70087 * 25 16 15 41 41 H 1.08995 * 109.97581 * 117.42774 * 25 16 15 42 42 H 1.09000 * 110.03401 * 35.54247 * 26 10 8 43 43 H 1.08997 * 110.03385 * 274.15306 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6439 -0.6980 0.0066 7 6 2.3372 -1.1432 0.0007 8 6 1.8915 -2.5486 0.0014 9 8 0.7164 -2.8138 -0.1648 10 7 2.7864 -3.5393 0.1864 11 6 2.5068 -4.9939 0.2576 12 6 3.4722 -5.4936 1.3656 13 6 4.7167 -4.6261 1.1378 14 6 5.7995 -5.4016 0.3667 15 6 6.5402 -6.1265 1.5211 16 7 6.5211 -5.1713 2.6454 17 6 7.4078 -5.1484 3.6888 18 1 7.3779 -4.3406 4.4051 19 6 8.3448 -6.1633 3.8259 20 7 8.4395 -7.1001 2.9062 21 14 9.4712 -6.1994 5.3155 22 1 8.8864 -7.0818 6.3571 23 1 10.8033 -6.7206 4.9163 24 1 9.6196 -4.8249 5.8575 25 6 5.3893 -4.2466 2.4592 26 6 4.2477 -3.3974 0.3605 27 1 -0.3634 0.0008 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5132 30 1 4.5297 -1.3158 0.0122 31 1 2.7329 -5.4748 -0.6943 32 1 1.4700 -5.1750 0.5412 33 1 3.7058 -6.5493 1.2283 34 1 3.0535 -5.3170 2.3563 35 1 5.3520 -6.1183 -0.3218 36 1 6.4680 -4.7206 -0.1601 37 1 7.5670 -6.3500 1.2312 38 1 6.0161 -7.0427 1.7934 39 1 9.0941 -7.8096 3.0022 40 1 5.7516 -3.2197 2.4109 41 1 4.6818 -4.3538 3.2813 42 1 4.4704 -2.4915 0.9243 43 1 4.7379 -3.3615 -0.6124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041529599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = 79.689567 kcal Electronic energy + Delta-G solvation = -25376.988382 eV Core-core repulsion = 21845.928720 eV Total energy + Delta-G solvation = -3531.059662 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62475 -39.97421 -38.18430 -35.66844 -33.14118 -32.70595 -31.42617 -29.92828 -28.93426 -28.56598 -28.05225 -25.80696 -24.28730 -22.94669 -22.10343 -20.66053 -20.28281 -19.64896 -18.77192 -17.60018 -16.90374 -16.57170 -15.87400 -15.34961 -15.13496 -14.76051 -14.52950 -14.14682 -13.76742 -13.64063 -13.23545 -13.15715 -12.93537 -12.84129 -12.53244 -12.19664 -12.07328 -11.95360 -11.43909 -11.38923 -11.11869 -11.01812 -10.96775 -10.81400 -10.27400 -10.08285 -10.03273 -9.87495 -9.79056 -9.68664 -9.53391 -9.00242 -8.69940 -8.56107 -6.87385 -5.74758 -3.13263 1.35527 2.02250 2.49082 3.06861 3.35787 3.41500 3.42022 3.43047 4.32413 4.42835 4.44700 4.66480 4.69593 4.92542 5.02106 5.12921 5.28883 5.33345 5.40321 5.43409 5.54666 5.58918 5.65824 5.71046 5.77478 5.86675 5.91046 5.95885 6.04425 6.19297 6.31476 6.34279 6.36674 6.48851 6.53365 6.68425 6.77226 6.89104 7.34664 7.47272 7.54771 7.63538 7.77629 8.26372 8.28501 9.15462 9.76197 10.42068 11.32266 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.003529 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.670256 B = 7931.748249 C = 8667.366587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.303 5.303 4 N -0.462 5.462 5 H 0.444 0.556 6 C 0.096 3.904 7 C -0.284 4.284 8 C 0.613 3.387 9 O -0.549 6.549 10 N -0.617 5.617 11 C 0.109 3.891 12 C -0.114 4.114 13 C -0.083 4.083 14 C -0.133 4.133 15 C 0.163 3.837 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.151 3.849 26 C 0.104 3.896 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.198 0.802 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.017 0.983 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.025 0.975 42 H 0.079 0.921 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 10.190 -8.351 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 N -0.126 5.126 4 N -0.166 5.166 5 H 0.289 0.711 6 C -0.056 4.056 7 C -0.299 4.299 8 C 0.403 3.597 9 O -0.428 6.428 10 N -0.350 5.350 11 C -0.013 4.013 12 C -0.153 4.153 13 C -0.084 4.084 14 C -0.172 4.172 15 C 0.038 3.962 16 N -0.330 5.330 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.025 3.975 26 C -0.019 4.019 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.215 0.785 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.199 11.282 -8.373 17.361 hybrid contribution 1.343 -0.656 0.903 1.746 sum -8.856 10.626 -7.470 15.721 Atomic orbital electron populations 1.20375 0.85682 1.04223 1.03577 1.22465 0.97351 0.88615 0.94978 1.77136 0.86385 1.22523 1.26605 1.46147 1.07771 1.05621 1.57104 0.71109 1.24037 0.99865 0.85570 0.96165 1.20222 0.92147 0.94387 1.23123 1.16797 0.84326 0.82771 0.75810 1.90717 1.16611 1.83789 1.51665 1.48750 1.07712 1.06911 1.71653 1.22553 1.00476 0.79272 0.99032 1.22629 0.93957 1.00151 0.98514 1.21572 0.95672 0.94147 0.97041 1.23002 0.96465 0.99051 0.98694 1.21761 1.00561 0.90049 0.83842 1.44581 1.29145 1.34132 1.25113 1.19052 1.08538 1.05926 1.01961 0.90586 1.24797 0.99961 0.96989 0.98632 1.69874 1.37855 1.15489 1.33557 0.86101 0.79894 0.77544 0.82238 1.21608 1.21724 1.20659 1.21212 0.89999 0.93635 0.92647 1.22495 0.80119 0.99306 0.99934 0.90249 0.91035 0.88348 0.78544 0.91108 0.89985 0.89562 0.90730 0.91916 0.91973 0.88832 0.96509 0.93708 0.96090 0.95725 0.90294 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.02 36.00 0.36 -0.52 16 2 C 0.13 1.74 7.26 -82.02 -0.60 1.14 16 3 N -0.30 -3.78 12.63 33.89 0.43 -3.35 16 4 N -0.46 -4.43 7.29 30.85 0.22 -4.21 16 5 H 0.44 2.64 8.96 -182.72 -1.64 1.01 16 6 C 0.10 0.98 10.41 -16.56 -0.17 0.81 16 7 C -0.28 -3.72 6.08 -105.06 -0.64 -4.36 16 8 C 0.61 9.05 7.88 -12.51 -0.10 8.95 16 9 O -0.55 -9.37 15.14 5.27 0.08 -9.29 16 10 N -0.62 -8.29 3.31 -171.15 -0.57 -8.86 16 11 C 0.11 1.40 7.09 -1.87 -0.01 1.38 16 12 C -0.11 -1.62 6.06 -25.35 -0.15 -1.77 16 13 C -0.08 -1.25 0.74 -153.92 -0.11 -1.37 16 14 C -0.13 -2.18 5.74 -25.13 -0.14 -2.33 16 15 C 0.16 3.63 5.61 -2.34 -0.01 3.62 16 16 N -0.60 -14.45 3.41 -170.37 -0.58 -15.03 16 17 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -25.87 10.23 55.49 0.57 -25.30 16 21 Si 0.91 21.44 29.56 -169.99 -5.02 16.42 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.15 2.88 6.45 -3.56 -0.02 2.85 16 26 C 0.10 1.28 4.75 -3.42 -0.02 1.27 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.18 6.42 -51.93 -0.33 0.85 16 30 H 0.20 1.57 4.84 -52.49 -0.25 1.32 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.09 1.23 7.77 -51.93 -0.40 0.82 16 34 H 0.07 1.11 7.49 -51.93 -0.39 0.72 16 35 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 36 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 37 H 0.09 2.39 6.23 -51.93 -0.32 2.07 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 41 H 0.02 0.49 7.43 -51.93 -0.39 0.11 16 42 H 0.08 0.90 4.47 -51.93 -0.23 0.66 16 43 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -32.66 337.81 -8.86 -41.52 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.21 Total: -0.15 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.87 Total: 3.17 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.07 Total: -56.75 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.66 -8.86 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041529599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.209 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds