Wall clock time and date at job start Fri Apr 10 2020 17:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30453 * 125.98966 * 2 1 4 4 N 1.39937 * 108.89543 * 179.97438 * 3 2 1 5 5 H 0.97000 * 125.75024 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.49406 * 359.74579 * 4 3 2 7 7 C 1.38044 * 107.41329 * 0.39793 * 6 4 3 8 8 C 1.47435 * 126.41035 * 179.87127 * 7 6 4 9 9 O 1.21604 * 119.99901 * 188.77313 * 8 7 6 10 10 N 1.34779 * 120.00101 * 8.77545 * 8 7 6 11 11 C 1.48300 * 127.04418 * 177.96157 * 10 8 7 12 12 C 1.55222 * 103.45812 * 218.52042 * 11 10 8 13 13 C 1.53395 * 102.50696 * 323.69599 * 12 11 10 14 14 C 1.53907 * 111.11643 * 259.61993 * 13 12 11 15 15 C 1.55140 * 101.44902 * 273.69298 * 14 13 12 16 16 N 1.47537 * 104.97284 * 324.25236 * 15 14 13 17 17 C 1.36945 * 125.66820 * 203.88507 * 16 15 14 18 18 H 1.08001 * 119.99855 * 173.06619 * 17 16 15 19 19 C 1.38811 * 120.00252 * 353.06206 * 17 16 15 20 20 N 1.31621 * 119.99554 * 4.45937 * 19 17 16 21 21 Si 1.86794 * 119.99972 * 184.45729 * 19 17 16 22 22 H 1.48505 * 109.47261 * 95.00029 * 21 19 17 23 23 H 1.48508 * 109.47075 * 214.99603 * 21 19 17 24 24 H 1.48493 * 109.47582 * 334.99974 * 21 19 17 25 25 C 1.47335 * 108.66260 * 23.90665 * 16 15 14 26 26 C 1.47845 * 127.00666 * 357.99071 * 10 8 7 27 27 H 1.09002 * 109.47206 * 270.04417 * 1 2 3 28 28 H 1.09004 * 109.47385 * 30.04415 * 1 2 3 29 29 H 1.09003 * 109.47294 * 150.04260 * 1 2 3 30 30 H 1.07999 * 126.29339 * 180.24314 * 6 4 3 31 31 H 1.09009 * 110.58947 * 100.03874 * 11 10 8 32 32 H 1.09000 * 110.77866 * 337.09785 * 11 10 8 33 33 H 1.08991 * 110.80422 * 205.43698 * 12 11 10 34 34 H 1.08998 * 110.96463 * 82.01589 * 12 11 10 35 35 H 1.08994 * 111.03289 * 31.73644 * 14 13 12 36 36 H 1.09000 * 111.02734 * 155.65679 * 14 13 12 37 37 H 1.08999 * 110.34238 * 205.38061 * 15 14 13 38 38 H 1.09004 * 110.42757 * 83.16890 * 15 14 13 39 39 H 0.97008 * 119.99581 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.97482 * 238.70087 * 25 16 15 41 41 H 1.08995 * 109.97581 * 117.42774 * 25 16 15 42 42 H 1.09000 * 110.03401 * 35.54247 * 26 10 8 43 43 H 1.08997 * 110.03385 * 274.15306 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6439 -0.6980 0.0066 7 6 2.3372 -1.1432 0.0007 8 6 1.8915 -2.5486 0.0014 9 8 0.7164 -2.8138 -0.1648 10 7 2.7864 -3.5393 0.1864 11 6 2.5068 -4.9939 0.2576 12 6 3.4722 -5.4936 1.3656 13 6 4.7167 -4.6261 1.1378 14 6 5.7995 -5.4016 0.3667 15 6 6.5402 -6.1265 1.5211 16 7 6.5211 -5.1713 2.6454 17 6 7.4078 -5.1484 3.6888 18 1 7.3779 -4.3406 4.4051 19 6 8.3448 -6.1633 3.8259 20 7 8.4395 -7.1001 2.9062 21 14 9.4712 -6.1994 5.3155 22 1 8.8864 -7.0818 6.3571 23 1 10.8033 -6.7206 4.9163 24 1 9.6196 -4.8249 5.8575 25 6 5.3893 -4.2466 2.4592 26 6 4.2477 -3.3974 0.3605 27 1 -0.3634 0.0008 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5132 30 1 4.5297 -1.3158 0.0122 31 1 2.7329 -5.4748 -0.6943 32 1 1.4700 -5.1750 0.5412 33 1 3.7058 -6.5493 1.2283 34 1 3.0535 -5.3170 2.3563 35 1 5.3520 -6.1183 -0.3218 36 1 6.4680 -4.7206 -0.1601 37 1 7.5670 -6.3500 1.2312 38 1 6.0161 -7.0427 1.7934 39 1 9.0941 -7.8096 3.0022 40 1 5.7516 -3.2197 2.4109 41 1 4.6818 -4.3538 3.2813 42 1 4.4704 -2.4915 0.9243 43 1 4.7379 -3.3615 -0.6124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041529599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:50 Heat of formation + Delta-G solvation = 57.943261 kcal Electronic energy + Delta-G solvation = -25377.931373 eV Core-core repulsion = 21845.928720 eV Total energy + Delta-G solvation = -3532.002653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51765 -41.13900 -39.42422 -37.11189 -34.45537 -33.93779 -32.62477 -31.40137 -30.17551 -29.88919 -28.92254 -27.37004 -25.69084 -24.25835 -23.08612 -22.04623 -21.57711 -20.54019 -20.06115 -18.85383 -18.42430 -17.62431 -17.04389 -16.69251 -16.33931 -16.11254 -15.69235 -15.48917 -15.20463 -14.95076 -14.33590 -14.23793 -14.14262 -13.77824 -13.74414 -13.67113 -13.28250 -13.05179 -12.97030 -12.84350 -12.64353 -12.50630 -12.33899 -12.03875 -11.97304 -11.77902 -11.49520 -11.33691 -11.18141 -10.85024 -10.68094 -10.53478 -9.95302 -9.58999 -8.80702 -7.78229 -5.17813 0.50410 1.06977 1.47814 1.49398 1.57585 1.71594 2.08257 2.39834 2.51459 3.32792 3.39928 3.53451 3.62970 3.64448 3.72231 3.87304 4.14324 4.18137 4.30426 4.32776 4.41674 4.44999 4.58269 4.75163 4.77217 4.81684 4.83206 4.85980 4.91824 4.96473 5.00714 5.11908 5.13063 5.24994 5.37202 5.44015 5.46904 5.52124 5.72687 5.87579 6.22225 6.32687 6.47243 6.60979 7.14849 7.21943 7.82597 8.46832 9.26609 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.003529 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.670256 B = 7931.748249 C = 8667.366587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.120 3.880 3 N -0.322 5.322 4 N -0.447 5.447 5 H 0.461 0.539 6 C 0.118 3.882 7 C -0.314 4.314 8 C 0.610 3.390 9 O -0.581 6.581 10 N -0.617 5.617 11 C 0.114 3.886 12 C -0.112 4.112 13 C -0.072 4.072 14 C -0.114 4.114 15 C 0.165 3.835 16 N -0.625 5.625 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.063 4.063 20 N -0.946 5.946 21 Si 0.972 3.028 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.147 3.853 26 C 0.110 3.890 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.225 0.775 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.057 0.943 38 H -0.013 1.013 39 H 0.246 0.754 40 H 0.036 0.964 41 H 0.014 0.986 42 H 0.093 0.907 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 11.820 -9.188 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.146 5.146 4 N -0.153 5.153 5 H 0.309 0.691 6 C -0.036 4.036 7 C -0.329 4.329 8 C 0.402 3.598 9 O -0.462 6.462 10 N -0.349 5.349 11 C -0.008 4.008 12 C -0.150 4.150 13 C -0.073 4.073 14 C -0.153 4.153 15 C 0.040 3.960 16 N -0.351 5.351 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.801 3.199 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.193 1.193 25 C 0.022 3.978 26 C -0.012 4.012 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.005 0.995 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.111 0.889 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.930 12.961 -9.212 18.747 hybrid contribution 1.271 -1.144 1.210 2.095 sum -8.660 11.817 -8.001 16.693 Atomic orbital electron populations 1.20358 0.85167 1.04233 1.03852 1.22734 0.98131 0.88849 0.95076 1.77095 0.87516 1.22696 1.27260 1.46195 1.07590 1.05864 1.55673 0.69111 1.24305 0.99581 0.85795 0.93932 1.20236 0.93492 0.93588 1.25575 1.17034 0.83984 0.83497 0.75320 1.90698 1.17935 1.84325 1.53292 1.48747 1.08058 1.06863 1.71242 1.22541 0.99791 0.79225 0.99223 1.22562 0.93947 0.99967 0.98532 1.21427 0.95255 0.95533 0.95113 1.22844 0.96312 0.99274 0.96864 1.21547 0.98945 0.89811 0.85703 1.44873 1.30095 1.35134 1.25011 1.19403 1.08815 1.05786 1.02661 0.90413 1.25548 1.01793 0.97140 1.01113 1.70107 1.38465 1.15974 1.34961 0.85151 0.77784 0.77816 0.79146 1.21965 1.22089 1.19323 1.21403 0.88589 0.93374 0.94460 1.22515 0.79492 0.98096 1.01145 0.89830 0.89561 0.89709 0.75936 0.89195 0.90488 0.89843 0.91976 0.89459 0.90381 0.92462 0.99481 0.94448 0.94565 0.96841 0.88885 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.02 71.23 0.71 -0.94 16 2 C 0.12 2.93 7.26 43.51 0.32 3.24 16 3 N -0.32 -7.36 12.63 -46.68 -0.59 -7.95 16 4 N -0.45 -7.17 7.29 -56.32 -0.41 -7.58 16 5 H 0.46 3.88 8.96 -213.42 -1.91 1.97 16 6 C 0.12 1.99 10.41 84.28 0.88 2.87 16 7 C -0.31 -7.53 6.08 -20.15 -0.12 -7.66 16 8 C 0.61 16.93 7.88 86.67 0.68 17.61 16 9 O -0.58 -19.47 15.14 -4.04 -0.06 -19.53 16 10 N -0.62 -14.88 3.31 -813.65 -2.70 -17.58 16 11 C 0.11 2.67 7.09 86.80 0.62 3.29 16 12 C -0.11 -2.99 6.06 31.49 0.19 -2.80 16 13 C -0.07 -2.00 0.74 -51.80 -0.04 -2.03 16 14 C -0.11 -3.46 5.74 31.63 0.18 -3.28 16 15 C 0.16 7.40 5.61 86.91 0.49 7.89 16 16 N -0.62 -29.86 3.41 -692.91 -2.36 -32.22 16 17 C -0.24 -12.73 10.27 84.03 0.86 -11.87 16 18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 20 N -0.95 -54.52 10.23 21.65 0.22 -54.30 16 21 Si 0.97 44.42 29.56 68.60 2.03 46.45 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.15 5.36 6.45 86.24 0.56 5.92 16 26 C 0.11 2.26 4.75 86.05 0.41 2.67 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 2.04 6.42 -2.39 -0.02 2.03 16 30 H 0.22 2.44 4.84 -2.91 -0.01 2.43 16 31 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 1.91 7.89 -2.39 -0.02 1.89 16 33 H 0.08 2.29 7.77 -2.39 -0.02 2.27 16 34 H 0.06 1.82 7.49 -2.39 -0.02 1.80 16 35 H 0.09 2.25 7.94 -2.39 -0.02 2.23 16 36 H 0.08 2.16 7.92 -2.39 -0.02 2.14 16 37 H 0.06 2.99 6.23 -2.39 -0.01 2.98 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 40 H 0.04 1.23 7.46 -2.39 -0.02 1.21 16 41 H 0.01 0.53 7.43 -2.39 -0.02 0.51 16 42 H 0.09 1.69 4.47 -2.39 -0.01 1.68 16 43 H 0.10 1.62 7.56 -2.39 -0.02 1.60 16 Total: -1.00 -72.51 337.81 1.46 -71.04 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.87 Total: 9.72 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.20 Total: 11.93 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -5.84 Total: -119.61 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.06 Total: -19.53 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.51 1.46 -71.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041529599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.988 kcal (2) G-P(sol) polarization free energy of solvation -72.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds