Wall clock time and date at job start Fri Apr 10 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47135 * 125.60369 * 0.02562 * 9 7 2 11 11 C 1.54585 * 107.32400 * 180.91585 * 10 9 7 12 12 C 1.53716 * 102.78206 * 20.89322 * 11 10 9 13 13 C 1.53232 * 111.52038 * 86.20467 * 12 11 10 14 14 C 1.55258 * 102.46444 * 101.30062 * 13 12 11 15 15 N 1.48252 * 103.44533 * 36.19500 * 14 13 12 16 16 C 1.34780 * 126.99993 * 141.54334 * 15 14 13 17 17 O 1.21276 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00020 * 0.02562 * 16 15 14 19 19 N 1.46494 * 109.47444 * 179.97438 * 18 16 15 20 20 C 1.36888 * 126.39607 * 89.99769 * 19 18 16 21 21 C 1.34668 * 106.81969 * 180.02562 * 20 19 18 22 22 N 1.34131 * 108.01806 * 359.97438 * 21 20 19 23 23 C 1.30500 * 109.25721 * 359.72463 * 22 21 20 24 24 C 1.47880 * 105.99794 * 321.55197 * 15 14 13 25 25 C 1.47699 * 125.60666 * 179.71864 * 9 7 2 26 26 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.87293 * 300.34994 * 10 9 7 28 28 H 1.08998 * 109.87060 * 61.34098 * 10 9 7 29 29 H 1.09001 * 110.74417 * 139.21537 * 11 10 9 30 30 H 1.08998 * 110.75035 * 262.56803 * 11 10 9 31 31 H 1.09001 * 110.80811 * 219.54437 * 13 12 11 32 32 H 1.09006 * 110.80916 * 343.05265 * 13 12 11 33 33 H 1.09004 * 110.62233 * 277.71430 * 14 13 12 34 34 H 1.08990 * 110.62760 * 154.68923 * 14 13 12 35 35 H 1.08999 * 109.46792 * 299.99942 * 18 16 15 36 36 H 1.09000 * 109.46950 * 59.99407 * 18 16 15 37 37 H 1.08000 * 126.58810 * 0.03719 * 20 19 18 38 38 H 1.07995 * 125.99222 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.65201 * 180.29022 * 23 22 21 40 40 H 1.09002 * 110.04433 * 265.87305 * 24 15 14 41 41 H 1.08998 * 110.09490 * 144.42907 * 24 15 14 42 42 H 1.09001 * 110.39332 * 276.21002 * 25 9 7 43 43 H 1.08993 * 110.39685 * 38.59938 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5319 -0.0005 11 6 -0.4526 -4.0453 0.0235 12 6 0.8484 -4.6539 0.5712 13 6 0.8621 -4.6654 2.1034 14 6 0.5060 -6.1408 2.4306 15 7 1.1845 -6.9054 1.3568 16 6 1.8132 -8.0913 1.4787 17 8 2.3291 -8.6065 0.5096 18 6 1.8751 -8.7771 2.8192 19 7 2.6058 -10.0401 2.6885 20 6 3.9547 -10.2174 2.8398 21 6 4.2012 -11.5253 2.6343 22 7 3.0346 -12.1302 2.3654 23 6 2.0738 -11.2478 2.4022 24 6 1.0311 -6.1019 0.1249 25 6 1.9357 -3.7332 -0.0048 26 1 -0.4850 0.8400 0.0004 27 1 -0.5587 -2.0522 0.8835 28 1 -0.5547 -2.0792 -0.9006 29 1 -1.2883 -4.2557 0.6909 30 1 -0.6578 -4.4132 -0.9818 31 1 1.8518 -4.4125 2.4837 32 1 0.1078 -3.9873 2.5025 33 1 -0.5724 -6.2939 2.3882 34 1 0.8968 -6.4224 3.4082 35 1 2.3875 -8.1328 3.5336 36 1 0.8634 -8.9779 3.1717 37 1 4.6815 -9.4550 3.0784 38 1 5.1685 -12.0035 2.6791 39 1 1.0270 -11.4495 2.2293 40 1 0.1550 -6.4347 -0.4316 41 1 1.9233 -6.1921 -0.4946 42 1 2.1893 -4.0312 -1.0222 43 1 2.8222 -3.7508 0.6291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041854903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:22 Heat of formation + Delta-G solvation = 50.678600 kcal Electronic energy + Delta-G solvation = -24886.953291 eV Core-core repulsion = 21354.635619 eV Total energy + Delta-G solvation = -3532.317672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97969 -41.41167 -39.77122 -37.22738 -34.97923 -34.46297 -32.09508 -30.60685 -30.48619 -30.21179 -28.86677 -27.10346 -25.19409 -24.00874 -22.27637 -22.23538 -22.06951 -20.56587 -20.19934 -18.86089 -18.49510 -18.05452 -17.15369 -16.72931 -16.54675 -15.95848 -15.69847 -15.42542 -15.35289 -14.95195 -14.80848 -14.36849 -14.35414 -14.09410 -14.04712 -13.81335 -13.37090 -13.24456 -13.04438 -12.95918 -12.64092 -12.54478 -12.48788 -11.99091 -11.86469 -11.55492 -11.43451 -11.36222 -11.27904 -10.97019 -10.70608 -10.47938 -9.79906 -9.41818 -8.88810 -7.85675 -5.20261 1.00793 1.43936 1.44994 1.46026 1.55767 1.68136 2.11296 2.26723 2.48416 3.27183 3.34240 3.53945 3.62065 3.69650 3.81154 3.89070 3.91917 4.01368 4.15303 4.24307 4.28467 4.42028 4.59470 4.61880 4.66093 4.73765 4.78210 4.78960 4.86481 4.89888 4.99797 5.08812 5.18663 5.29278 5.34303 5.41503 5.45568 5.70358 5.80771 5.82473 6.20237 6.22195 6.46684 6.97852 7.11323 7.14653 7.77547 8.41505 9.24349 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.002783 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.075128 B =10058.482374 C =10388.782939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.186 3.814 11 C -0.115 4.115 12 C -0.073 4.073 13 C -0.110 4.110 14 C 0.104 3.896 15 N -0.613 5.613 16 C 0.510 3.490 17 O -0.583 6.583 18 C 0.097 3.903 19 N -0.448 5.448 20 C -0.047 4.047 21 C -0.058 4.058 22 N -0.538 5.538 23 C 0.185 3.815 24 C 0.130 3.870 25 C 0.145 3.855 26 H 0.247 0.753 27 H 0.018 0.982 28 H 0.000 1.000 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.229 0.771 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.011 0.989 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -17.183 11.150 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.062 3.938 11 C -0.153 4.153 12 C -0.075 4.075 13 C -0.148 4.148 14 C -0.017 4.017 15 N -0.346 5.346 16 C 0.299 3.701 17 O -0.462 6.462 18 C -0.029 4.029 19 N -0.131 5.131 20 C -0.180 4.180 21 C -0.204 4.204 22 N -0.257 5.257 23 C -0.098 4.098 24 C 0.007 3.993 25 C 0.020 3.980 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.018 0.982 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.212 0.788 38 H 0.197 0.803 39 H 0.245 0.755 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.668 -18.050 10.503 20.894 hybrid contribution 0.650 2.382 -0.651 2.554 sum -0.018 -15.668 9.851 18.507 Atomic orbital electron populations 1.70171 1.06084 1.25134 1.58359 1.25565 0.96598 1.00715 1.02723 0.85074 0.78118 0.79782 0.76748 1.19341 1.22190 1.21607 1.19427 0.90813 0.83876 1.42800 0.90546 1.44835 1.02575 1.00684 1.86919 1.20973 0.83320 0.91845 0.97710 1.22688 0.96584 0.94911 1.01138 1.21494 0.95983 0.92622 0.97354 1.22455 1.02726 0.97043 0.92543 1.22996 0.98890 0.88637 0.91156 1.48999 1.54079 1.19339 1.12210 1.21052 0.77334 0.80059 0.91671 1.90789 1.47993 1.65468 1.41986 1.21966 1.02582 0.84030 0.94278 1.45189 1.07554 1.08471 1.51848 1.23107 0.85311 0.99844 1.09725 1.22619 0.97704 0.92257 1.07864 1.70230 1.00173 1.33994 1.21255 1.25499 1.01141 0.79961 1.03178 1.21717 1.01654 0.88502 0.87452 1.21604 0.94886 0.84893 0.96657 0.94400 0.96345 0.98205 0.88684 0.91530 0.91549 0.89836 0.87910 0.86162 0.82791 0.81690 0.78843 0.80339 0.75528 0.90164 0.92587 0.97117 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.52 10.30 21.65 0.22 -55.30 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 3 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.24 -13.19 10.28 84.03 0.86 -12.33 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -30.74 3.41 -692.91 -2.36 -33.10 16 10 C 0.19 8.59 5.33 86.80 0.46 9.05 16 11 C -0.11 -3.61 5.65 31.38 0.18 -3.43 16 12 C -0.07 -2.08 0.75 -51.76 -0.04 -2.12 16 13 C -0.11 -2.45 6.12 31.45 0.19 -2.25 16 14 C 0.10 1.27 6.96 86.82 0.60 1.87 16 15 N -0.61 -11.56 3.31 -810.07 -2.68 -14.24 16 16 C 0.51 10.35 7.96 87.66 0.70 11.05 16 17 O -0.58 -18.58 16.78 -3.02 -0.05 -18.63 16 18 C 0.10 0.97 5.57 85.63 0.48 1.45 16 19 N -0.45 -7.74 2.24 -533.15 -1.19 -8.93 16 20 C -0.05 -0.89 11.58 83.09 0.96 0.07 16 21 C -0.06 -1.31 11.87 83.52 0.99 -0.32 16 22 N -0.54 -13.91 11.25 -200.31 -2.25 -16.16 16 23 C 0.18 3.68 12.56 180.26 2.26 5.95 16 24 C 0.13 3.25 6.31 85.99 0.54 3.80 16 25 C 0.14 5.65 6.10 86.38 0.53 6.18 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 28 H 0.00 -0.02 7.49 -2.39 -0.02 -0.03 16 29 H 0.09 2.41 7.94 -2.39 -0.02 2.39 16 30 H 0.07 2.01 7.91 -2.39 -0.02 1.99 16 31 H 0.07 1.62 7.66 -2.39 -0.02 1.61 16 32 H 0.08 2.01 7.80 -2.38 -0.02 1.99 16 33 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.12 0.53 7.25 -2.39 -0.02 0.51 16 35 H 0.15 0.63 7.90 -2.39 -0.02 0.61 16 36 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.08 1.88 7.63 -2.39 -0.02 1.86 16 41 H 0.06 1.67 7.54 -2.39 -0.02 1.66 16 42 H 0.01 0.45 7.90 -2.39 -0.02 0.43 16 43 H 0.04 1.45 7.72 -2.39 -0.02 1.44 16 Total: -1.00 -81.46 349.40 3.90 -77.57 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.00 Total: 5.81 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 9.19 Total: 15.91 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -8.27 Total: -127.73 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -81.46 3.90 -77.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041854903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.245 kcal (2) G-P(sol) polarization free energy of solvation -81.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds