Wall clock time and date at job start Fri Apr 10 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33314 * 126.10809 * 2 1 4 4 C 1.30861 * 109.68627 * 180.28048 * 3 2 1 5 5 N 1.34495 * 109.16183 * 359.76566 * 4 3 2 6 6 H 0.96996 * 126.47689 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10427 * 179.89058 * 2 1 3 8 8 C 1.46757 * 126.84407 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00350 * 353.43229 * 8 7 2 10 10 N 1.34784 * 120.00021 * 173.43236 * 8 7 2 11 11 C 1.47558 * 125.66839 * 354.45697 * 10 8 7 12 12 C 1.55189 * 105.00396 * 203.85765 * 11 10 8 13 13 C 1.53724 * 101.43761 * 324.52676 * 12 11 10 14 14 C 1.53653 * 111.40341 * 272.72021 * 13 12 11 15 15 C 1.55179 * 101.41984 * 272.69820 * 14 13 12 16 16 N 1.47563 * 105.00683 * 324.50898 * 15 14 13 17 17 C 1.36936 * 125.67375 * 203.86211 * 16 15 14 18 18 H 1.07998 * 119.99959 * 168.61566 * 17 16 15 19 19 C 1.38816 * 119.99763 * 348.61123 * 17 16 15 20 20 N 1.31618 * 120.00359 * 350.90143 * 19 17 16 21 21 Si 1.86798 * 119.99845 * 170.90005 * 19 17 16 22 22 H 1.48508 * 109.47140 * 94.78794 * 21 19 17 23 23 H 1.48498 * 109.47582 * 214.78991 * 21 19 17 24 24 H 1.48507 * 109.47473 * 334.79093 * 21 19 17 25 25 C 1.47406 * 108.65232 * 23.85614 * 16 15 14 26 26 C 1.47399 * 125.67468 * 174.45839 * 10 8 7 27 27 H 1.09004 * 109.47015 * 270.11447 * 1 2 3 28 28 H 1.08999 * 109.46920 * 30.11372 * 1 2 3 29 29 H 1.08994 * 109.47528 * 150.11485 * 1 2 3 30 30 H 1.07994 * 125.41770 * 179.74537 * 4 3 2 31 31 H 1.09000 * 110.33811 * 322.74184 * 11 10 8 32 32 H 1.08998 * 110.33464 * 84.88101 * 11 10 8 33 33 H 1.08996 * 111.03045 * 82.54029 * 12 11 10 34 34 H 1.08999 * 111.03819 * 206.43262 * 12 11 10 35 35 H 1.08995 * 111.03995 * 30.74029 * 14 13 12 36 36 H 1.09004 * 111.03010 * 154.66551 * 14 13 12 37 37 H 1.09006 * 110.33556 * 205.62297 * 15 14 13 38 38 H 1.09004 * 110.41971 * 83.43315 * 15 14 13 39 39 H 0.97000 * 120.00124 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.98488 * 238.54737 * 25 16 15 41 41 H 1.08994 * 109.98713 * 117.24201 * 25 16 15 42 42 H 1.09003 * 109.98883 * 297.24424 * 26 10 8 43 43 H 1.09003 * 109.98782 * 58.51051 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0060 5 7 3.6122 -0.6363 -0.0050 6 1 4.4188 -1.1750 -0.0089 7 6 2.3123 -1.1042 0.0021 8 6 1.8820 -2.5072 0.0053 9 8 0.7028 -2.7817 0.1269 10 7 2.7930 -3.4919 -0.1264 11 6 4.2314 -3.3028 -0.3958 12 6 4.6955 -4.6311 -1.0504 13 6 3.8370 -5.6591 -0.2958 14 6 4.5193 -6.1134 1.0038 15 6 5.3974 -7.2876 0.4956 16 7 4.5984 -7.9309 -0.5652 17 6 4.7227 -9.2292 -0.9823 18 1 3.9761 -9.6615 -1.6321 19 6 5.8084 -9.9897 -0.5701 20 7 6.8066 -9.4189 0.0702 21 14 5.8525 -11.8233 -0.9241 22 1 6.6051 -12.0669 -2.1810 23 1 6.5222 -12.5283 0.1983 24 1 4.4653 -12.3327 -1.0711 25 6 3.6441 -6.9434 -1.1011 26 6 2.5180 -4.9364 -0.0253 27 1 -0.3633 0.0021 1.0277 28 1 -0.3633 0.8890 -0.5156 29 1 -0.3634 -0.8909 -0.5120 30 1 4.3970 1.3744 -0.0114 31 1 4.3819 -2.4695 -1.0821 32 1 4.7713 -3.1286 0.5349 33 1 4.4701 -4.6413 -2.1168 34 1 5.7574 -4.8034 -0.8756 35 1 5.1349 -5.3169 1.4217 36 1 3.7848 -6.4602 1.7307 37 1 5.5916 -7.9928 1.3039 38 1 6.3359 -6.9120 0.0879 39 1 7.5654 -9.9503 0.3579 40 1 2.6240 -7.3084 -0.9817 41 1 3.8527 -6.7575 -2.1546 42 1 2.1591 -5.1783 0.9752 43 1 1.7748 -5.2272 -0.7678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041861116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:38 Heat of formation + Delta-G solvation = 59.031507 kcal Electronic energy + Delta-G solvation = -25223.363547 eV Core-core repulsion = 21691.408084 eV Total energy + Delta-G solvation = -3531.955463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50630 -40.23819 -38.38232 -35.93677 -33.64814 -32.66223 -31.39119 -30.54282 -29.34220 -28.76730 -27.50217 -25.67279 -24.10611 -23.26485 -22.35866 -21.24251 -20.38946 -19.75346 -18.99477 -17.75480 -16.92176 -16.57038 -16.27193 -15.71226 -15.29695 -14.77956 -14.72958 -14.40319 -13.91428 -13.73006 -13.20609 -13.12991 -13.02679 -12.89884 -12.76420 -12.62049 -12.24667 -12.01283 -11.66683 -11.45816 -11.36566 -10.91551 -10.83213 -10.60205 -10.38072 -10.24999 -10.12163 -10.10259 -9.98498 -9.85671 -9.73207 -8.94754 -8.64970 -8.57880 -6.86422 -5.81693 -3.14378 1.09187 2.55947 2.61230 2.87542 3.15262 3.35443 3.41926 3.43727 4.15524 4.32688 4.41646 4.44507 4.63439 4.77641 4.89649 4.94854 5.05599 5.12635 5.25963 5.41970 5.47950 5.64229 5.67196 5.71168 5.77050 5.81971 5.87847 5.91774 5.99398 6.07278 6.09957 6.21938 6.38138 6.42692 6.46001 6.63937 6.72983 6.91478 7.30496 7.39570 7.49184 7.65679 7.71089 7.97562 8.18449 9.12619 9.74095 10.41571 11.31685 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039287 B = 0.002987 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.539744 B = 9372.116982 C = 9804.511632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.094 3.906 3 N -0.500 5.500 4 C 0.214 3.786 5 N -0.558 5.558 6 H 0.424 0.576 7 C -0.085 4.085 8 C 0.607 3.393 9 O -0.524 6.524 10 N -0.616 5.616 11 C 0.087 3.913 12 C -0.110 4.110 13 C -0.080 4.080 14 C -0.133 4.133 15 C 0.176 3.824 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.151 3.849 26 C 0.127 3.873 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.215 0.785 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 18.406 0.394 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 N -0.220 5.220 4 C -0.070 4.070 5 N -0.167 5.167 6 H 0.268 0.732 7 C -0.201 4.201 8 C 0.396 3.604 9 O -0.400 6.400 10 N -0.350 5.350 11 C -0.036 4.036 12 C -0.148 4.148 13 C -0.082 4.082 14 C -0.172 4.172 15 C 0.051 3.949 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.025 3.975 26 C 0.005 3.995 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.232 0.768 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.461 18.904 0.503 19.430 hybrid contribution 1.198 -1.917 -0.187 2.268 sum -3.263 16.987 0.316 17.301 Atomic orbital electron populations 1.20262 0.86472 1.03463 1.03092 1.21073 0.96918 0.86570 0.99479 1.70133 1.00484 1.30488 1.20935 1.25155 0.97442 0.82293 1.02073 1.43933 1.08408 1.08908 1.55453 0.73241 1.20903 0.84333 0.94913 1.19957 1.16454 0.84863 0.81991 0.77109 1.90828 1.15814 1.82591 1.50791 1.48547 1.08379 1.07161 1.70869 1.22649 0.81519 0.99805 0.99645 1.22633 1.01106 0.91385 0.99658 1.21537 0.93381 0.95383 0.97853 1.22917 0.99707 0.99773 0.94786 1.21433 0.91255 0.90627 0.91593 1.44562 1.40436 1.07874 1.39948 1.19017 1.04985 0.85470 1.26330 0.90642 1.24823 0.95706 0.98575 1.01162 1.69941 1.08334 1.34185 1.44081 0.86132 0.77538 0.84913 0.77354 1.21606 1.21608 1.20548 1.21053 0.94270 0.87227 0.94930 1.21903 0.97683 0.77614 1.02269 0.90673 0.91106 0.89503 0.76842 0.91342 0.91078 0.90275 0.88847 0.92164 0.91773 0.91585 0.95370 0.93707 0.95378 0.95522 0.90872 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.82 36.01 0.35 -0.50 16 2 C 0.09 1.20 7.14 -82.52 -0.59 0.61 16 3 N -0.50 -5.93 11.20 -10.65 -0.12 -6.05 16 4 C 0.21 1.78 13.01 -90.57 -1.18 0.60 16 5 N -0.56 -4.85 5.43 -10.79 -0.06 -4.91 16 6 H 0.42 2.63 5.53 -40.82 -0.23 2.41 16 7 C -0.09 -1.05 6.83 -82.14 -0.56 -1.61 16 8 C 0.61 8.67 7.81 -12.81 -0.10 8.57 16 9 O -0.52 -8.88 15.25 5.21 0.08 -8.80 16 10 N -0.62 -8.00 3.34 -172.36 -0.58 -8.57 16 11 C 0.09 0.88 5.17 -2.30 -0.01 0.87 16 12 C -0.11 -1.39 5.89 -25.20 -0.15 -1.53 16 13 C -0.08 -1.24 0.62 -153.99 -0.10 -1.33 16 14 C -0.13 -2.23 5.89 -25.24 -0.15 -2.38 16 15 C 0.18 3.93 5.29 -2.31 -0.01 3.92 16 16 N -0.60 -14.58 3.41 -170.41 -0.58 -15.16 16 17 C -0.23 -6.21 10.24 -15.06 -0.15 -6.37 16 18 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.04 10.72 55.49 0.59 -25.45 16 21 Si 0.91 21.57 29.56 -169.99 -5.03 16.55 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.15 2.94 6.42 -3.64 -0.02 2.92 16 26 C 0.13 1.83 6.05 -3.65 -0.02 1.81 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.06 6.64 -51.93 -0.34 0.72 16 30 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 32 H 0.07 0.61 7.83 -51.93 -0.41 0.21 16 33 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 34 H 0.09 1.20 7.89 -51.93 -0.41 0.79 16 35 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 36 H 0.06 1.09 7.79 -51.93 -0.40 0.68 16 37 H 0.07 1.68 7.03 -51.93 -0.37 1.32 16 38 H 0.03 0.68 7.99 -51.93 -0.42 0.26 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 41 H 0.03 0.52 7.61 -51.93 -0.40 0.13 16 42 H 0.07 1.09 7.61 -51.93 -0.40 0.69 16 43 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -33.04 339.69 -9.47 -42.51 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.12 Total: -0.54 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.78 Total: 5.30 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.74 Total: -60.14 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.04 -9.47 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041861116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.544 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds