Wall clock time and date at job start Fri Apr 10 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33314 * 126.10809 * 2 1 4 4 C 1.30861 * 109.68627 * 180.28048 * 3 2 1 5 5 N 1.34495 * 109.16183 * 359.76566 * 4 3 2 6 6 H 0.96996 * 126.47689 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10427 * 179.89058 * 2 1 3 8 8 C 1.46757 * 126.84407 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00350 * 353.43229 * 8 7 2 10 10 N 1.34784 * 120.00021 * 173.43236 * 8 7 2 11 11 C 1.47558 * 125.66839 * 354.45697 * 10 8 7 12 12 C 1.55189 * 105.00396 * 203.85765 * 11 10 8 13 13 C 1.53724 * 101.43761 * 324.52676 * 12 11 10 14 14 C 1.53653 * 111.40341 * 272.72021 * 13 12 11 15 15 C 1.55179 * 101.41984 * 272.69820 * 14 13 12 16 16 N 1.47563 * 105.00683 * 324.50898 * 15 14 13 17 17 C 1.36936 * 125.67375 * 203.86211 * 16 15 14 18 18 H 1.07998 * 119.99959 * 168.61566 * 17 16 15 19 19 C 1.38816 * 119.99763 * 348.61123 * 17 16 15 20 20 N 1.31618 * 120.00359 * 350.90143 * 19 17 16 21 21 Si 1.86798 * 119.99845 * 170.90005 * 19 17 16 22 22 H 1.48508 * 109.47140 * 94.78794 * 21 19 17 23 23 H 1.48498 * 109.47582 * 214.78991 * 21 19 17 24 24 H 1.48507 * 109.47473 * 334.79093 * 21 19 17 25 25 C 1.47406 * 108.65232 * 23.85614 * 16 15 14 26 26 C 1.47399 * 125.67468 * 174.45839 * 10 8 7 27 27 H 1.09004 * 109.47015 * 270.11447 * 1 2 3 28 28 H 1.08999 * 109.46920 * 30.11372 * 1 2 3 29 29 H 1.08994 * 109.47528 * 150.11485 * 1 2 3 30 30 H 1.07994 * 125.41770 * 179.74537 * 4 3 2 31 31 H 1.09000 * 110.33811 * 322.74184 * 11 10 8 32 32 H 1.08998 * 110.33464 * 84.88101 * 11 10 8 33 33 H 1.08996 * 111.03045 * 82.54029 * 12 11 10 34 34 H 1.08999 * 111.03819 * 206.43262 * 12 11 10 35 35 H 1.08995 * 111.03995 * 30.74029 * 14 13 12 36 36 H 1.09004 * 111.03010 * 154.66551 * 14 13 12 37 37 H 1.09006 * 110.33556 * 205.62297 * 15 14 13 38 38 H 1.09004 * 110.41971 * 83.43315 * 15 14 13 39 39 H 0.97000 * 120.00124 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.98488 * 238.54737 * 25 16 15 41 41 H 1.08994 * 109.98713 * 117.24201 * 25 16 15 42 42 H 1.09003 * 109.98883 * 297.24424 * 26 10 8 43 43 H 1.09003 * 109.98782 * 58.51051 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0060 5 7 3.6122 -0.6363 -0.0050 6 1 4.4188 -1.1750 -0.0089 7 6 2.3123 -1.1042 0.0021 8 6 1.8820 -2.5072 0.0053 9 8 0.7028 -2.7817 0.1269 10 7 2.7930 -3.4919 -0.1264 11 6 4.2314 -3.3028 -0.3958 12 6 4.6955 -4.6311 -1.0504 13 6 3.8370 -5.6591 -0.2958 14 6 4.5193 -6.1134 1.0038 15 6 5.3974 -7.2876 0.4956 16 7 4.5984 -7.9309 -0.5652 17 6 4.7227 -9.2292 -0.9823 18 1 3.9761 -9.6615 -1.6321 19 6 5.8084 -9.9897 -0.5701 20 7 6.8066 -9.4189 0.0702 21 14 5.8525 -11.8233 -0.9241 22 1 6.6051 -12.0669 -2.1810 23 1 6.5222 -12.5283 0.1983 24 1 4.4653 -12.3327 -1.0711 25 6 3.6441 -6.9434 -1.1011 26 6 2.5180 -4.9364 -0.0253 27 1 -0.3633 0.0021 1.0277 28 1 -0.3633 0.8890 -0.5156 29 1 -0.3634 -0.8909 -0.5120 30 1 4.3970 1.3744 -0.0114 31 1 4.3819 -2.4695 -1.0821 32 1 4.7713 -3.1286 0.5349 33 1 4.4701 -4.6413 -2.1168 34 1 5.7574 -4.8034 -0.8756 35 1 5.1349 -5.3169 1.4217 36 1 3.7848 -6.4602 1.7307 37 1 5.5916 -7.9928 1.3039 38 1 6.3359 -6.9120 0.0879 39 1 7.5654 -9.9503 0.3579 40 1 2.6240 -7.3084 -0.9817 41 1 3.8527 -6.7575 -2.1546 42 1 2.1591 -5.1783 0.9752 43 1 1.7748 -5.2272 -0.7678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041861116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:37 Heat of formation + Delta-G solvation = 38.138001 kcal Electronic energy + Delta-G solvation = -25224.269557 eV Core-core repulsion = 21691.408084 eV Total energy + Delta-G solvation = -3532.861473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.29360 -41.39769 -39.62226 -37.34319 -34.81622 -34.05014 -32.45296 -31.85748 -30.62901 -30.25166 -28.48919 -27.24419 -25.47498 -24.46259 -23.22821 -22.18388 -22.14632 -20.62639 -20.21872 -18.92696 -18.54325 -17.55733 -17.31970 -16.84261 -16.62173 -16.24057 -15.70894 -15.66639 -15.42340 -14.98259 -14.41515 -14.33526 -14.08539 -13.98886 -13.86245 -13.74340 -13.68911 -13.16246 -13.09871 -12.91862 -12.75552 -12.64994 -12.50912 -11.99658 -11.87108 -11.64778 -11.53322 -11.46931 -11.35571 -11.02099 -10.95530 -10.67327 -9.96111 -9.46219 -8.84046 -7.89341 -5.22920 0.23003 1.45829 1.46910 1.56241 1.65772 1.82212 2.07096 2.19830 2.48928 3.22981 3.34486 3.41639 3.53387 3.58745 3.69724 3.79024 4.04113 4.11155 4.16528 4.22758 4.31628 4.38692 4.61790 4.67095 4.68494 4.71731 4.80876 4.81682 4.85071 4.95235 4.98105 4.99274 5.06465 5.16228 5.22175 5.30253 5.46286 5.53508 5.61326 5.75808 6.20317 6.28951 6.33745 6.86898 6.95778 7.09049 7.75814 8.42246 9.22534 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039287 B = 0.002987 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.539744 B = 9372.116982 C = 9804.511632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.080 3.920 3 N -0.534 5.534 4 C 0.241 3.759 5 N -0.546 5.546 6 H 0.437 0.563 7 C -0.105 4.105 8 C 0.605 3.395 9 O -0.562 6.562 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.107 4.107 13 C -0.069 4.069 14 C -0.115 4.115 15 C 0.182 3.818 16 N -0.624 5.624 17 C -0.245 4.245 18 H 0.074 0.926 19 C -0.059 4.059 20 N -0.944 5.944 21 Si 0.973 3.027 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.147 3.853 26 C 0.134 3.866 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 20.578 0.286 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 N -0.255 5.255 4 C -0.044 4.044 5 N -0.156 5.156 6 H 0.283 0.717 7 C -0.221 4.221 8 C 0.395 3.605 9 O -0.441 6.441 10 N -0.347 5.347 11 C -0.030 4.030 12 C -0.145 4.145 13 C -0.070 4.070 14 C -0.153 4.153 15 C 0.057 3.943 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.092 0.908 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.197 1.197 25 C 0.022 3.978 26 C 0.012 3.988 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.280 0.720 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.540 21.081 0.381 21.380 hybrid contribution 0.920 -2.545 -0.187 2.713 sum -2.620 18.536 0.194 18.721 Atomic orbital electron populations 1.20222 0.86602 1.03203 1.03102 1.21292 0.97459 0.87258 0.99461 1.70153 1.01992 1.30539 1.22772 1.26148 0.97652 0.82426 0.98135 1.43837 1.07575 1.09235 1.54975 0.71672 1.20546 0.85956 0.93590 1.21979 1.16716 0.84452 0.82838 0.76469 1.90805 1.17435 1.83288 1.52582 1.48522 1.09573 1.06124 1.70521 1.22807 0.79672 0.99162 1.01377 1.22598 1.00599 0.91692 0.99587 1.21344 0.94607 0.94347 0.96727 1.22753 0.98988 0.98311 0.95262 1.21240 0.91636 0.91457 0.89980 1.44850 1.41270 1.08073 1.40841 1.19347 1.04860 0.87201 1.25976 0.90782 1.25580 0.95645 1.02450 1.01608 1.70115 1.08683 1.35250 1.45169 0.85157 0.77650 0.80192 0.76878 1.21287 1.21907 1.19726 1.21195 0.92896 0.88252 0.95461 1.21653 0.96623 0.78784 1.01766 0.90549 0.90051 0.90967 0.71959 0.88559 0.88448 0.90215 0.88695 0.88841 0.91986 0.95519 0.97305 0.94245 0.95729 0.95546 0.91285 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 9.82 71.24 0.70 -0.95 16 2 C 0.08 1.91 7.14 41.97 0.30 2.21 16 3 N -0.53 -11.20 11.20 -187.59 -2.10 -13.30 16 4 C 0.24 2.93 13.01 180.33 2.35 5.28 16 5 N -0.55 -7.28 5.43 -188.05 -1.02 -8.30 16 6 H 0.44 3.24 5.53 -92.71 -0.51 2.72 16 7 C -0.10 -2.35 6.83 40.01 0.27 -2.08 16 8 C 0.60 16.46 7.81 86.47 0.68 17.14 16 9 O -0.56 -19.10 15.25 -4.29 -0.07 -19.17 16 10 N -0.61 -14.61 3.34 -817.46 -2.73 -17.35 16 11 C 0.09 1.50 5.17 86.93 0.45 1.95 16 12 C -0.11 -2.42 5.89 31.59 0.19 -2.24 16 13 C -0.07 -2.04 0.62 -51.84 -0.03 -2.07 16 14 C -0.11 -3.70 5.89 31.56 0.19 -3.52 16 15 C 0.18 8.25 5.29 86.92 0.46 8.71 16 16 N -0.62 -30.78 3.41 -693.05 -2.36 -33.14 16 17 C -0.24 -13.49 10.24 84.03 0.86 -12.63 16 18 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 19 C -0.06 -3.28 5.40 84.86 0.46 -2.82 16 20 N -0.94 -54.86 10.72 21.65 0.23 -54.63 16 21 Si 0.97 44.99 29.56 68.60 2.03 47.02 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.15 5.73 6.42 86.14 0.55 6.28 16 26 C 0.13 3.72 6.05 86.15 0.52 4.24 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.82 6.64 -2.39 -0.02 1.80 16 30 H 0.26 0.23 8.06 -2.91 -0.02 0.21 16 31 H 0.10 1.09 6.22 -2.39 -0.01 1.08 16 32 H 0.10 1.17 7.83 -2.39 -0.02 1.15 16 33 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 34 H 0.09 2.19 7.89 -2.39 -0.02 2.17 16 35 H 0.09 2.41 7.88 -2.39 -0.02 2.39 16 36 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16 37 H 0.03 1.40 7.03 -2.38 -0.02 1.38 16 38 H 0.01 0.44 7.99 -2.38 -0.02 0.42 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.02 0.97 7.78 -2.39 -0.02 0.95 16 41 H 0.03 1.04 7.61 -2.39 -0.02 1.02 16 42 H 0.07 1.98 7.61 -2.39 -0.02 1.97 16 43 H 0.06 1.92 7.78 -2.39 -0.02 1.90 16 Total: -1.00 -74.95 339.69 2.43 -72.52 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.52 Total: 6.84 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 7.93 Total: 19.50 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -7.99 Total: -126.72 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.07 Total: -19.17 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.95 2.43 -72.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041861116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.663 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds