Wall clock time and date at job start Fri Apr 10 2020 17:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30862 * 125.41697 * 2 1 4 4 C 1.33326 * 109.68320 * 179.78590 * 3 2 1 5 5 C 1.36666 * 107.78393 * 0.37989 * 4 3 2 6 6 C 1.46762 * 126.84054 * 179.89467 * 5 4 3 7 7 O 1.21680 * 120.00041 * 337.96546 * 6 5 4 8 8 N 1.34782 * 119.99738 * 157.97094 * 6 5 4 9 9 C 1.46635 * 119.77954 * 352.89237 * 8 6 5 10 10 C 1.53890 * 110.79357 * 227.67997 * 9 8 6 11 11 C 1.51980 * 107.29387 * 308.25850 * 10 9 8 12 12 H 1.09003 * 111.57235 * 303.14115 * 11 10 9 13 13 C 1.53698 * 114.99845 * 175.42944 * 11 10 9 14 14 C 1.55293 * 101.81644 * 206.54756 * 13 11 10 15 15 N 1.48156 * 107.04536 * 22.44470 * 14 13 11 16 16 C 1.36936 * 126.40405 * 184.96757 * 15 14 13 17 17 H 1.07997 * 120.00104 * 173.08670 * 16 15 14 18 18 C 1.38816 * 119.99495 * 353.08431 * 16 15 14 19 19 N 1.31617 * 120.00213 * 5.79078 * 18 16 15 20 20 Si 1.86800 * 119.99607 * 185.78636 * 18 16 15 21 21 H 1.48507 * 109.46927 * 94.99238 * 20 18 16 22 22 H 1.48499 * 109.46927 * 214.98778 * 20 18 16 23 23 H 1.48500 * 109.47484 * 334.99045 * 20 18 16 24 24 C 1.45511 * 107.20037 * 5.00393 * 15 14 13 25 25 H 1.09000 * 109.56805 * 85.84784 * 24 15 14 26 26 C 1.47799 * 119.75115 * 173.03286 * 8 6 5 27 27 N 1.34499 * 125.42050 * 180.02562 * 2 1 3 28 28 H 0.96993 * 126.46797 * 359.95768 * 27 2 1 29 29 H 1.08996 * 109.46995 * 269.97897 * 1 2 3 30 30 H 1.09007 * 109.46998 * 29.97205 * 1 2 3 31 31 H 1.08995 * 109.46880 * 149.97023 * 1 2 3 32 32 H 1.07994 * 126.10405 * 180.26901 * 4 3 2 33 33 H 1.08998 * 109.13089 * 107.37903 * 9 8 6 34 34 H 1.08996 * 109.20868 * 348.03616 * 9 8 6 35 35 H 1.08998 * 109.88800 * 188.81018 * 10 9 8 36 36 H 1.08998 * 109.88854 * 67.70877 * 10 9 8 37 37 H 1.09003 * 110.95818 * 88.41767 * 13 11 10 38 38 H 1.09003 * 110.96000 * 324.67994 * 13 11 10 39 39 H 1.09001 * 109.92180 * 263.09941 * 14 13 11 40 40 H 1.09002 * 109.92090 * 141.79569 * 14 13 11 41 41 H 0.96995 * 119.99724 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.06612 * 9.52548 * 26 8 6 43 43 H 1.09001 * 110.06294 * 248.06473 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 0.0047 5 6 3.5976 -0.6608 -0.0008 6 6 4.8029 -1.4982 -0.0007 7 8 5.8610 -1.0415 -0.3910 8 7 4.7376 -2.7731 0.4317 9 6 3.5027 -3.2717 1.0453 10 6 3.8068 -4.0184 2.3561 11 6 4.8785 -5.0515 2.0494 12 1 4.5663 -5.7290 1.2546 13 6 5.3977 -5.8303 3.2685 14 6 6.8296 -6.2196 2.8108 15 7 7.2232 -5.2603 1.7525 16 6 8.3717 -5.2979 1.0078 17 1 8.5049 -4.6106 0.1855 18 6 9.3648 -6.2196 1.3099 19 7 9.1571 -7.1310 2.2364 20 14 10.9961 -6.1662 0.4014 21 1 11.9777 -5.3809 1.1922 22 1 11.5041 -7.5490 0.2145 23 1 10.8036 -5.5261 -0.9247 24 6 6.1617 -4.2701 1.6530 25 1 6.3316 -3.4782 2.3824 26 6 5.9126 -3.6578 0.2866 27 7 2.2865 -1.0961 -0.0005 28 1 1.9850 -2.0179 -0.0003 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 4.3978 1.3722 0.0099 33 1 3.0082 -3.9515 0.3514 34 1 2.8421 -2.4308 1.2561 35 1 2.9061 -4.5145 2.7178 36 1 4.1716 -3.3170 3.1063 37 1 4.7919 -6.7179 3.4510 38 1 5.4305 -5.1938 4.1527 39 1 6.8290 -7.2337 2.4111 40 1 7.5202 -6.1493 3.6513 41 1 9.8512 -7.7748 2.4477 42 1 6.7807 -3.0782 -0.0273 43 1 5.7032 -4.4413 -0.4417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041978839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:38 Heat of formation + Delta-G solvation = 67.645752 kcal Electronic energy + Delta-G solvation = -25579.486789 eV Core-core repulsion = 22047.904868 eV Total energy + Delta-G solvation = -3531.581921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53969 -40.00344 -38.18769 -35.64305 -33.18766 -32.82032 -32.17938 -31.31196 -29.60112 -28.60162 -27.52210 -24.87081 -24.23050 -22.57319 -22.16334 -21.28847 -20.20983 -19.99390 -19.50579 -17.68427 -16.72238 -16.44901 -15.84519 -15.78508 -14.93377 -14.83803 -14.46599 -14.22314 -13.99777 -13.81161 -13.58340 -13.34177 -13.10527 -13.07039 -12.80173 -12.69858 -12.38382 -11.95362 -11.62959 -11.41602 -11.07861 -10.88725 -10.78806 -10.53504 -10.32236 -10.18361 -10.02808 -9.95854 -9.90812 -9.69889 -9.54964 -8.78217 -8.64282 -8.48924 -6.88457 -5.76448 -3.09687 1.18922 2.52964 2.65965 2.94037 3.31211 3.40679 3.46928 3.48071 4.07503 4.41570 4.46735 4.59169 4.69212 4.81687 4.94836 5.05992 5.10540 5.18666 5.28535 5.32899 5.49983 5.50604 5.57329 5.62348 5.67136 5.80707 5.90729 5.95820 6.00973 6.07804 6.29005 6.34445 6.40361 6.47153 6.60569 6.65738 6.93558 6.97774 7.35899 7.51298 7.55920 7.71384 7.77412 8.13025 8.19545 9.15337 9.78368 10.45000 11.36588 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.003799 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.897763 B = 7368.817568 C = 8341.274470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.227 3.773 3 N -0.495 5.495 4 C 0.065 3.935 5 C -0.078 4.078 6 C 0.590 3.410 7 O -0.522 6.522 8 N -0.604 5.604 9 C 0.093 3.907 10 C -0.116 4.116 11 C -0.115 4.115 12 H 0.077 0.923 13 C -0.138 4.138 14 C 0.178 3.822 15 N -0.591 5.591 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.157 3.843 25 H 0.025 0.975 26 C 0.117 3.883 27 N -0.554 5.554 28 H 0.424 0.576 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.030 7.954 -1.399 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 N -0.215 5.215 4 C -0.088 4.088 5 C -0.194 4.194 6 C 0.376 3.624 7 O -0.397 6.397 8 N -0.338 5.338 9 C -0.031 4.031 10 C -0.155 4.155 11 C -0.134 4.134 12 H 0.096 0.904 13 C -0.176 4.176 14 C 0.054 3.946 15 N -0.316 5.316 16 C -0.360 4.360 17 H 0.098 0.902 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.048 3.952 25 H 0.043 0.957 26 C -0.004 4.004 27 N -0.164 5.164 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.200 0.800 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.475 8.835 -1.638 21.448 hybrid contribution 1.051 -1.414 -0.348 1.796 sum -18.424 7.422 -1.986 19.961 Atomic orbital electron populations 1.20291 0.84322 1.04477 1.04034 1.23490 0.95901 0.81841 1.02396 1.70181 1.02128 1.28303 1.20913 1.22640 0.94729 0.91184 1.00272 1.21223 0.83749 0.96003 1.18398 1.16972 0.86436 0.80801 0.78150 1.90863 1.28921 1.71830 1.48093 1.48201 1.15041 1.11073 1.59493 1.22091 0.86437 0.98700 0.95886 1.21767 0.99741 0.98112 0.95881 1.22290 0.95346 0.96572 0.99233 0.90430 1.22729 0.99543 0.98892 0.96435 1.21538 0.88673 0.93273 0.91154 1.44163 1.18162 1.27195 1.42126 1.19049 0.91839 1.15807 1.09258 0.90216 1.24810 0.98372 0.98033 0.98847 1.69950 1.33134 1.19116 1.34438 0.86135 0.83992 0.76838 0.79069 1.21521 1.21782 1.20473 1.20973 0.88554 0.92088 0.93627 0.95731 1.21786 0.86963 0.92568 0.99112 1.43937 1.06133 1.10370 1.55979 0.73237 0.89581 0.88715 0.90497 0.79958 0.91592 0.90398 0.90689 0.91127 0.92191 0.92473 0.93199 0.93899 0.93715 0.88556 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.23 2.17 8.12 -155.61 -1.26 0.91 16 3 N -0.49 -6.26 11.20 -10.58 -0.12 -6.38 16 4 C 0.06 0.87 11.73 -17.47 -0.20 0.67 16 5 C -0.08 -1.03 6.35 -82.14 -0.52 -1.55 16 6 C 0.59 9.51 7.61 -12.81 -0.10 9.41 16 7 O -0.52 -10.38 16.35 5.21 0.09 -10.30 16 8 N -0.60 -9.07 3.02 -174.22 -0.53 -9.59 16 9 C 0.09 1.00 5.03 -3.51 -0.02 0.99 16 10 C -0.12 -1.39 5.72 -26.79 -0.15 -1.54 16 11 C -0.11 -1.84 2.61 -89.51 -0.23 -2.07 16 12 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 13 C -0.14 -2.41 6.54 -25.15 -0.16 -2.57 16 14 C 0.18 4.17 5.43 -1.92 -0.01 4.16 16 15 N -0.59 -14.66 3.35 -162.90 -0.55 -15.21 16 16 C -0.23 -6.35 9.89 -15.06 -0.15 -6.50 16 17 H 0.08 2.14 7.37 -52.49 -0.39 1.76 16 18 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 19 N -0.92 -26.69 10.49 55.49 0.58 -26.11 16 20 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.16 3.15 2.77 -67.82 -0.19 2.96 16 25 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 26 C 0.12 2.17 5.66 -3.95 -0.02 2.15 16 27 N -0.55 -5.27 4.81 -7.02 -0.03 -5.30 16 28 H 0.42 2.86 6.40 -40.82 -0.26 2.60 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 34 H 0.08 0.70 4.41 -51.93 -0.23 0.47 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.05 1.29 7.45 -51.93 -0.39 0.90 16 40 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.10 2.03 6.75 -51.93 -0.35 1.68 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -33.69 339.00 -9.41 -43.10 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.19 Total: 0.68 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -2.74 Total: 6.80 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.64 Total: -62.59 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.69 -9.41 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041978839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.748 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds