Wall clock time and date at job start Fri Apr 10 2020 17:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30862 * 125.41697 * 2 1 4 4 C 1.33326 * 109.68320 * 179.78590 * 3 2 1 5 5 C 1.36666 * 107.78393 * 0.37989 * 4 3 2 6 6 C 1.46762 * 126.84054 * 179.89467 * 5 4 3 7 7 O 1.21680 * 120.00041 * 337.96546 * 6 5 4 8 8 N 1.34782 * 119.99738 * 157.97094 * 6 5 4 9 9 C 1.46635 * 119.77954 * 352.89237 * 8 6 5 10 10 C 1.53890 * 110.79357 * 227.67997 * 9 8 6 11 11 C 1.51980 * 107.29387 * 308.25850 * 10 9 8 12 12 H 1.09003 * 111.57235 * 303.14115 * 11 10 9 13 13 C 1.53698 * 114.99845 * 175.42944 * 11 10 9 14 14 C 1.55293 * 101.81644 * 206.54756 * 13 11 10 15 15 N 1.48156 * 107.04536 * 22.44470 * 14 13 11 16 16 C 1.36936 * 126.40405 * 184.96757 * 15 14 13 17 17 H 1.07997 * 120.00104 * 173.08670 * 16 15 14 18 18 C 1.38816 * 119.99495 * 353.08431 * 16 15 14 19 19 N 1.31617 * 120.00213 * 5.79078 * 18 16 15 20 20 Si 1.86800 * 119.99607 * 185.78636 * 18 16 15 21 21 H 1.48507 * 109.46927 * 94.99238 * 20 18 16 22 22 H 1.48499 * 109.46927 * 214.98778 * 20 18 16 23 23 H 1.48500 * 109.47484 * 334.99045 * 20 18 16 24 24 C 1.45511 * 107.20037 * 5.00393 * 15 14 13 25 25 H 1.09000 * 109.56805 * 85.84784 * 24 15 14 26 26 C 1.47799 * 119.75115 * 173.03286 * 8 6 5 27 27 N 1.34499 * 125.42050 * 180.02562 * 2 1 3 28 28 H 0.96993 * 126.46797 * 359.95768 * 27 2 1 29 29 H 1.08996 * 109.46995 * 269.97897 * 1 2 3 30 30 H 1.09007 * 109.46998 * 29.97205 * 1 2 3 31 31 H 1.08995 * 109.46880 * 149.97023 * 1 2 3 32 32 H 1.07994 * 126.10405 * 180.26901 * 4 3 2 33 33 H 1.08998 * 109.13089 * 107.37903 * 9 8 6 34 34 H 1.08996 * 109.20868 * 348.03616 * 9 8 6 35 35 H 1.08998 * 109.88800 * 188.81018 * 10 9 8 36 36 H 1.08998 * 109.88854 * 67.70877 * 10 9 8 37 37 H 1.09003 * 110.95818 * 88.41767 * 13 11 10 38 38 H 1.09003 * 110.96000 * 324.67994 * 13 11 10 39 39 H 1.09001 * 109.92180 * 263.09941 * 14 13 11 40 40 H 1.09002 * 109.92090 * 141.79569 * 14 13 11 41 41 H 0.96995 * 119.99724 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.06612 * 9.52548 * 26 8 6 43 43 H 1.09001 * 110.06294 * 248.06473 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 0.0047 5 6 3.5976 -0.6608 -0.0008 6 6 4.8029 -1.4982 -0.0007 7 8 5.8610 -1.0415 -0.3910 8 7 4.7376 -2.7731 0.4317 9 6 3.5027 -3.2717 1.0453 10 6 3.8068 -4.0184 2.3561 11 6 4.8785 -5.0515 2.0494 12 1 4.5663 -5.7290 1.2546 13 6 5.3977 -5.8303 3.2685 14 6 6.8296 -6.2196 2.8108 15 7 7.2232 -5.2603 1.7525 16 6 8.3717 -5.2979 1.0078 17 1 8.5049 -4.6106 0.1855 18 6 9.3648 -6.2196 1.3099 19 7 9.1571 -7.1310 2.2364 20 14 10.9961 -6.1662 0.4014 21 1 11.9777 -5.3809 1.1922 22 1 11.5041 -7.5490 0.2145 23 1 10.8036 -5.5261 -0.9247 24 6 6.1617 -4.2701 1.6530 25 1 6.3316 -3.4782 2.3824 26 6 5.9126 -3.6578 0.2866 27 7 2.2865 -1.0961 -0.0005 28 1 1.9850 -2.0179 -0.0003 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 4.3978 1.3722 0.0099 33 1 3.0082 -3.9515 0.3514 34 1 2.8421 -2.4308 1.2561 35 1 2.9061 -4.5145 2.7178 36 1 4.1716 -3.3170 3.1063 37 1 4.7919 -6.7179 3.4510 38 1 5.4305 -5.1938 4.1527 39 1 6.8290 -7.2337 2.4111 40 1 7.5202 -6.1493 3.6513 41 1 9.8512 -7.7748 2.4477 42 1 6.7807 -3.0782 -0.0273 43 1 5.7032 -4.4413 -0.4417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041978839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:37 Heat of formation + Delta-G solvation = 44.669147 kcal Electronic energy + Delta-G solvation = -25580.483130 eV Core-core repulsion = 22047.904868 eV Total energy + Delta-G solvation = -3532.578261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.43640 -41.30520 -39.63191 -37.07286 -34.79653 -33.90504 -33.01111 -32.80858 -31.00343 -30.22017 -28.37847 -26.60655 -25.67120 -23.82437 -23.28620 -22.25922 -21.78117 -21.28629 -20.72026 -18.90080 -18.47744 -17.52446 -17.11384 -16.93304 -16.61391 -16.16858 -15.74774 -15.63812 -15.22388 -15.00887 -14.93214 -14.50711 -14.24588 -14.06859 -13.84735 -13.67300 -13.40978 -13.19750 -13.17902 -13.11067 -12.78927 -12.58294 -12.22692 -12.02881 -11.76912 -11.64015 -11.59515 -11.45599 -11.12845 -11.07615 -11.03138 -10.74849 -9.95089 -9.51266 -8.92649 -7.90919 -5.24860 0.20701 1.41824 1.43926 1.52232 1.59349 1.63810 1.94894 2.22568 2.46636 3.28339 3.28838 3.42892 3.54302 3.67977 3.86142 3.88350 4.03887 4.15634 4.19357 4.24963 4.29732 4.39117 4.55025 4.59210 4.61602 4.75212 4.80498 4.81677 4.83608 4.86859 5.04112 5.10662 5.16408 5.18377 5.27552 5.43951 5.47261 5.52492 5.65106 5.74033 6.15777 6.17574 6.27521 6.83902 6.91231 7.05185 7.73180 8.40325 9.20825 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.003799 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.897763 B = 7368.817568 C = 8341.274470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.250 3.750 3 N -0.527 5.527 4 C 0.057 3.943 5 C -0.093 4.093 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.601 5.601 9 C 0.087 3.913 10 C -0.108 4.108 11 C -0.096 4.096 12 H 0.083 0.917 13 C -0.122 4.122 14 C 0.181 3.819 15 N -0.613 5.613 16 C -0.240 4.240 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.946 5.946 20 Si 0.970 3.030 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.271 1.271 24 C 0.147 3.853 25 H 0.004 0.996 26 C 0.130 3.870 27 N -0.539 5.539 28 H 0.440 0.560 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.177 0.823 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.002 0.998 41 H 0.248 0.752 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.339 8.062 -1.548 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.014 4.014 3 N -0.248 5.248 4 C -0.097 4.097 5 C -0.209 4.209 6 C 0.376 3.624 7 O -0.454 6.454 8 N -0.333 5.333 9 C -0.035 4.035 10 C -0.146 4.146 11 C -0.116 4.116 12 H 0.102 0.898 13 C -0.160 4.160 14 C 0.056 3.944 15 N -0.338 5.338 16 C -0.369 4.369 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.798 3.202 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.195 1.195 24 C 0.039 3.961 25 H 0.021 0.979 26 C 0.007 3.993 27 N -0.151 5.151 28 H 0.286 0.714 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.194 0.806 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.855 8.931 -1.779 25.534 hybrid contribution 2.319 -1.373 -0.285 2.710 sum -21.536 7.557 -2.064 22.917 Atomic orbital electron populations 1.20587 0.80555 1.06162 1.05828 1.24416 0.97557 0.80859 0.98598 1.70221 1.01835 1.29951 1.22772 1.22728 0.95407 0.91514 1.00065 1.20617 0.84201 0.95315 1.20791 1.17354 0.86761 0.81006 0.77239 1.90830 1.31147 1.72936 1.50444 1.48209 1.15305 1.10366 1.59434 1.22471 0.84789 1.00270 0.95969 1.21773 0.99847 0.96755 0.96221 1.22222 0.94282 0.96722 0.98325 0.89825 1.22600 0.95592 1.00547 0.97251 1.21357 0.91857 0.91831 0.89347 1.44427 1.18802 1.28506 1.42042 1.19321 0.93189 1.15148 1.09215 0.90617 1.25567 1.01392 0.98194 1.00146 1.70144 1.33639 1.19732 1.35920 0.85191 0.80114 0.76633 0.78248 1.21746 1.21608 1.19538 1.21123 0.89578 0.91365 0.94063 0.97905 1.21360 0.87540 0.92390 0.98021 1.43783 1.04449 1.11339 1.55530 0.71360 0.87533 0.88393 0.87474 0.80586 0.88095 0.87907 0.86031 0.92072 0.89190 0.91458 0.96289 0.97976 0.94296 0.92273 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 71.24 0.75 0.39 16 2 C 0.25 3.86 8.12 138.19 1.12 4.98 16 3 N -0.53 -12.34 11.20 -187.39 -2.10 -14.44 16 4 C 0.06 1.49 11.73 84.10 0.99 2.48 16 5 C -0.09 -2.34 6.35 40.01 0.25 -2.09 16 6 C 0.59 18.97 7.61 86.47 0.66 19.63 16 7 O -0.57 -24.04 16.35 -4.29 -0.07 -24.11 16 8 N -0.60 -17.34 3.02 -823.32 -2.48 -19.82 16 9 C 0.09 1.51 5.03 86.65 0.44 1.94 16 10 C -0.11 -2.09 5.72 30.56 0.17 -1.91 16 11 C -0.10 -2.84 2.61 -10.08 -0.03 -2.87 16 12 H 0.08 2.44 8.13 -2.39 -0.02 2.42 16 13 C -0.12 -4.06 6.54 31.62 0.21 -3.85 16 14 C 0.18 8.76 5.43 86.85 0.47 9.23 16 15 N -0.61 -31.53 3.35 -669.30 -2.24 -33.77 16 16 C -0.24 -13.72 9.89 84.03 0.83 -12.88 16 17 H 0.08 4.27 7.37 -2.91 -0.02 4.25 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 19 N -0.95 -57.28 10.49 21.65 0.23 -57.05 16 20 Si 0.97 47.20 29.56 68.60 2.03 49.23 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.15 5.96 2.77 45.60 0.13 6.09 16 25 H 0.00 0.16 7.90 -2.39 -0.02 0.14 16 26 C 0.13 4.90 5.66 85.73 0.49 5.38 16 27 N -0.54 -8.25 4.81 -176.11 -0.85 -9.09 16 28 H 0.44 3.65 6.40 -92.71 -0.59 3.05 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.10 1.34 4.41 -2.39 -0.01 1.33 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.36 7.97 -2.39 -0.02 1.34 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 39 H 0.02 1.01 7.45 -2.39 -0.02 1.00 16 40 H 0.00 0.11 7.59 -2.39 -0.02 0.09 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 2.65 6.75 -2.39 -0.02 2.64 16 43 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -80.86 339.00 1.89 -78.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.44 Total: 6.55 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.94 Total: 23.54 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -7.44 Total: -134.17 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -80.86 1.89 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041978839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.641 kcal (2) G-P(sol) polarization free energy of solvation -80.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds