Wall clock time and date at job start Fri Apr 10 2020 17:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48507 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47128 * 299.99629 * 3 2 1 6 6 H 1.48495 * 109.47188 * 60.00163 * 3 2 1 7 7 C 1.38815 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.47432 * 126.06108 * 359.97438 * 9 7 2 11 11 C 1.56550 * 107.35605 * 178.29171 * 10 9 7 12 12 C 1.56031 * 101.68299 * 337.37041 * 11 10 9 13 13 H 1.09000 * 112.85391 * 157.36126 * 12 11 10 14 14 C 1.53086 * 106.39454 * 281.19762 * 12 11 10 15 15 C 1.52830 * 110.57782 * 164.56677 * 14 12 11 16 16 N 1.47156 * 107.98538 * 302.65650 * 15 14 12 17 17 C 1.34770 * 121.21915 * 237.29363 * 16 15 14 18 18 O 1.21283 * 120.00109 * 179.97438 * 17 16 15 19 19 C 1.50702 * 120.00181 * 359.97438 * 17 16 15 20 20 C 1.50697 * 109.47247 * 180.02562 * 19 17 16 21 21 C 1.39873 * 125.89958 * 125.00066 * 20 19 17 22 22 C 1.35316 * 107.91987 * 180.02562 * 21 20 19 23 23 N 1.34943 * 107.74531 * 0.02562 * 22 21 20 24 24 H 0.97009 * 126.03442 * 180.26020 * 23 22 21 25 25 N 1.30832 * 125.89875 * 305.02206 * 20 19 17 26 26 C 1.46759 * 117.56380 * 57.55433 * 16 15 14 27 27 C 1.46469 * 126.05622 * 179.97438 * 9 7 2 28 28 H 1.09005 * 107.85768 * 90.37197 * 27 9 7 29 29 H 0.96995 * 119.99896 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.90245 * 297.75668 * 10 9 7 31 31 H 1.09004 * 109.90434 * 58.82127 * 10 9 7 32 32 H 1.08995 * 111.58181 * 219.24025 * 11 10 9 33 33 H 1.08997 * 110.85022 * 95.17722 * 11 10 9 34 34 H 1.09007 * 109.25418 * 44.28434 * 14 12 11 35 35 H 1.08999 * 109.22839 * 284.83385 * 14 12 11 36 36 H 1.09004 * 109.76214 * 183.03791 * 15 14 12 37 37 H 1.09003 * 109.76088 * 62.28052 * 15 14 12 38 38 H 1.09001 * 109.47347 * 60.00108 * 19 17 16 39 39 H 1.09009 * 109.47032 * 300.00367 * 19 17 16 40 40 H 1.07997 * 126.03616 * 359.97438 * 21 20 19 41 41 H 1.07996 * 126.12469 * 179.97438 * 22 21 20 42 42 H 1.09009 * 109.22455 * 67.51950 * 26 16 15 43 43 H 1.08995 * 109.23074 * 186.88476 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1406 -2.5437 0.0005 11 6 -0.4473 -4.0782 -0.0440 12 6 0.8719 -4.6466 -0.6532 13 1 1.0293 -5.6986 -0.4152 14 6 0.7964 -4.3920 -2.1609 15 6 2.1736 -4.5558 -2.8029 16 7 3.0991 -3.6258 -2.1365 17 6 3.7800 -2.6967 -2.8361 18 8 4.5368 -1.9410 -2.2642 19 6 3.6011 -2.5968 -4.3291 20 6 4.4683 -1.4873 -4.8659 21 6 5.4209 -1.6098 -5.8827 22 6 5.9847 -0.3946 -6.0735 23 7 5.4097 0.4661 -5.2079 24 1 5.6142 1.4105 -5.1214 25 7 4.4603 -0.2433 -4.4610 26 6 3.2579 -3.7508 -0.6829 27 6 1.9199 -3.7267 0.0005 28 1 2.0494 -4.0350 1.0380 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5599 -2.1082 0.9075 31 1 -0.5656 -2.0552 -0.8763 32 1 -1.2976 -4.2985 -0.6893 33 1 -0.6103 -4.4705 0.9598 34 1 0.4360 -3.3784 -2.3367 35 1 0.1033 -5.1029 -2.6107 36 1 2.1154 -4.3194 -3.8654 37 1 2.5222 -5.5801 -2.6712 38 1 2.5565 -2.3843 -4.5565 39 1 3.8894 -3.5399 -4.7936 40 1 5.6641 -2.5146 -6.4198 41 1 6.7572 -0.1565 -6.7897 42 1 3.7527 -4.6952 -0.4558 43 1 3.8713 -2.9278 -0.3166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041993393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:52 Heat of formation + Delta-G solvation = 50.195152 kcal Electronic energy + Delta-G solvation = -26381.425077 eV Core-core repulsion = 22849.086441 eV Total energy + Delta-G solvation = -3532.338636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08489 -41.19269 -39.42039 -36.41456 -34.61804 -33.97433 -32.79381 -31.04721 -30.79218 -29.97699 -29.12907 -26.50011 -25.29052 -23.80038 -22.59495 -21.78558 -21.60358 -20.33990 -19.47554 -18.96756 -18.42221 -17.95457 -16.98579 -16.55495 -16.34089 -16.00059 -15.58516 -15.42846 -15.08013 -14.71854 -14.53323 -14.34844 -14.08840 -13.97191 -13.76380 -13.50247 -13.22817 -13.04679 -12.96189 -12.86222 -12.63735 -12.49784 -12.24796 -12.05623 -11.66156 -11.44915 -11.35281 -11.21201 -11.07620 -10.68623 -10.65978 -10.30380 -9.57806 -9.37544 -8.78796 -7.85368 -5.13386 1.09147 1.28474 1.32719 1.44564 1.79462 1.88935 2.10449 2.40779 2.46112 3.34104 3.55885 3.69605 3.87617 3.92004 4.00767 4.08088 4.14439 4.35468 4.39226 4.52290 4.54071 4.59668 4.68016 4.70706 4.78270 4.79612 4.90003 4.93683 4.97638 5.08972 5.15563 5.18438 5.21321 5.38699 5.54490 5.70134 5.73404 5.76077 5.82291 5.84534 6.24010 6.55183 6.69702 6.85359 7.16106 7.46918 7.84368 8.46294 9.25554 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.006666 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.488398 B = 4199.425156 C = 5819.755413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.953 3.047 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.287 1.287 7 C -0.190 4.190 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.129 4.129 12 C -0.083 4.083 13 H 0.123 0.877 14 C -0.122 4.122 15 C 0.106 3.894 16 N -0.599 5.599 17 C 0.510 3.490 18 O -0.581 6.581 19 C -0.051 4.051 20 C 0.067 3.933 21 C -0.279 4.279 22 C 0.065 3.935 23 N -0.484 5.484 24 H 0.445 0.555 25 N -0.332 5.332 26 C 0.120 3.880 27 C 0.140 3.860 28 H 0.023 0.977 29 H 0.241 0.759 30 H -0.005 1.005 31 H 0.007 0.993 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.224 0.776 42 H 0.090 0.910 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -14.122 -14.661 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.214 1.214 7 C -0.320 4.320 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.060 3.940 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.141 0.859 14 C -0.160 4.160 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.298 3.702 18 O -0.460 6.460 19 C -0.092 4.092 20 C -0.100 4.100 21 C -0.308 4.308 22 C -0.082 4.082 23 N -0.193 5.193 24 H 0.289 0.711 25 N -0.156 5.156 26 C -0.004 4.004 27 C 0.034 3.966 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.013 0.987 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.174 0.826 40 H 0.197 0.803 41 H 0.241 0.759 42 H 0.108 0.892 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.878 -12.675 -13.559 19.794 hybrid contribution 0.638 2.014 0.173 2.120 sum 7.516 -10.661 -13.386 18.690 Atomic orbital electron populations 1.70131 1.05342 1.24213 1.60385 1.25206 0.96287 0.99620 1.04518 0.85343 0.77668 0.82018 0.76476 1.21492 1.22706 1.21400 1.19046 0.89946 0.83724 1.39271 0.91929 1.44494 1.02233 1.00422 1.85940 1.21336 0.83510 0.92364 0.96800 1.23362 0.98020 0.94459 1.00890 1.22393 0.93500 0.98955 0.95346 0.85878 1.21832 0.97816 1.01562 0.94797 1.22052 0.87940 0.93879 0.97607 1.47963 1.43566 1.34411 1.07237 1.20882 0.79805 0.79084 0.90399 1.90687 1.40173 1.42671 1.72483 1.20164 1.00418 0.98033 0.90610 1.22100 0.98715 0.92572 0.96598 1.21789 1.03331 1.00670 1.05047 1.23357 0.99420 0.89946 0.95451 1.46517 1.31086 1.12269 1.29429 0.71076 1.77536 1.12387 1.07794 1.17924 1.20974 0.97335 1.01272 0.80810 1.20911 0.93154 0.86098 0.96471 0.95942 0.94950 0.98661 0.97511 0.89668 0.91487 0.95106 0.87720 0.87725 0.87507 0.87376 0.82602 0.80300 0.75940 0.89163 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.45 10.38 21.65 0.22 -61.22 16 2 C -0.06 -4.06 5.49 84.86 0.47 -3.60 16 3 Si 0.95 53.92 29.55 68.60 2.03 55.95 16 4 H -0.29 -16.69 7.11 99.48 0.71 -15.99 16 5 H -0.30 -17.05 7.11 99.48 0.71 -16.34 16 6 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 7 C -0.19 -11.61 9.65 84.03 0.81 -10.80 16 8 H 0.06 4.05 6.42 -2.91 -0.02 4.03 16 9 N -0.61 -31.73 3.19 -671.73 -2.15 -33.87 16 10 C 0.18 9.27 4.67 87.44 0.41 9.68 16 11 C -0.13 -4.39 6.48 32.88 0.21 -4.18 16 12 C -0.08 -2.40 3.64 -9.38 -0.03 -2.43 16 13 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.12 -3.21 5.04 30.57 0.15 -3.05 16 15 C 0.11 2.34 6.35 86.20 0.55 2.89 16 16 N -0.60 -20.22 2.96 -824.94 -2.45 -22.66 16 17 C 0.51 19.89 7.71 87.66 0.68 20.57 16 18 O -0.58 -29.49 15.02 -3.04 -0.05 -29.54 16 19 C -0.05 -1.47 4.64 29.10 0.14 -1.33 16 20 C 0.07 2.22 6.02 43.10 0.26 2.48 16 21 C -0.28 -6.52 10.72 21.99 0.24 -6.28 16 22 C 0.07 1.33 11.99 83.54 1.00 2.33 16 23 N -0.48 -13.71 7.36 -57.60 -0.42 -14.14 16 24 H 0.44 10.01 8.96 -213.32 -1.91 8.10 16 25 N -0.33 -13.35 12.04 -47.39 -0.57 -13.92 16 26 C 0.12 4.52 5.60 85.45 0.48 5.00 16 27 C 0.14 5.55 2.97 44.45 0.13 5.68 16 28 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.00 -0.28 7.57 -2.39 -0.02 -0.30 16 31 H 0.01 0.38 7.03 -2.38 -0.02 0.36 16 32 H 0.08 2.50 7.97 -2.39 -0.02 2.48 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.03 1.13 6.85 -2.38 -0.02 1.12 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.75 6.02 -2.39 -0.01 1.74 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.11 3.04 7.79 -2.39 -0.02 3.02 16 39 H 0.16 2.70 7.89 -2.38 -0.02 2.68 16 40 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.05 2.19 5.41 -2.39 -0.01 2.18 16 Total: -1.00 -94.78 337.99 1.22 -93.56 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.88 Total: 8.90 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.48 Total: 16.95 kcal Atomic # 7 Polarization: -140.45 SS G_CDS: -5.36 Total: -145.81 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 53.92 SS G_CDS: 2.03 Total: 55.95 kcal Total: -94.78 1.22 -93.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041993393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.753 kcal (2) G-P(sol) polarization free energy of solvation -94.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds