Wall clock time and date at job start Fri Apr 10 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30451 * 125.98780 * 2 1 4 4 N 1.39931 * 108.89793 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.75188 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.48738 * 359.75218 * 4 3 2 7 7 C 1.38039 * 107.42267 * 0.39278 * 6 4 3 8 8 C 1.47427 * 126.41457 * 179.87412 * 7 6 4 9 9 O 1.21608 * 119.99745 * 128.32615 * 8 7 6 10 10 N 1.34773 * 120.00183 * 308.31977 * 8 7 6 11 11 C 1.45227 * 119.34073 * 185.60027 * 10 8 7 12 12 C 1.50609 * 112.83619 * 135.99603 * 11 10 8 13 13 C 1.48863 * 117.90614 * 27.68728 * 12 11 10 14 14 H 1.08997 * 106.75641 * 217.68943 * 13 12 11 15 15 C 1.55056 * 111.54310 * 101.51156 * 13 12 11 16 16 C 1.55061 * 101.27012 * 194.53423 * 15 13 12 17 17 N 1.47554 * 104.85112 * 35.96713 * 16 15 13 18 18 C 1.36932 * 125.85284 * 156.09346 * 17 16 15 19 19 H 1.08006 * 120.00854 * 326.55093 * 18 17 16 20 20 C 1.38815 * 119.99922 * 146.55589 * 18 17 16 21 21 N 1.31620 * 120.00455 * 160.38892 * 20 18 17 22 22 Si 1.86803 * 119.99719 * 340.38681 * 20 18 17 23 23 H 1.48504 * 109.47146 * 87.35323 * 22 20 18 24 24 H 1.48499 * 109.47288 * 207.35223 * 22 20 18 25 25 H 1.48493 * 109.47123 * 327.35316 * 22 20 18 26 26 C 1.47617 * 108.28338 * 336.11574 * 17 16 15 27 27 H 1.09004 * 108.10242 * 244.72441 * 26 17 16 28 28 C 1.44681 * 119.91388 * 5.98806 * 10 8 7 29 29 H 1.08997 * 109.47627 * 270.04281 * 1 2 3 30 30 H 1.09004 * 109.47638 * 30.04150 * 1 2 3 31 31 H 1.09006 * 109.46899 * 150.04217 * 1 2 3 32 32 H 1.08012 * 126.28535 * 180.24373 * 6 4 3 33 33 H 1.09004 * 108.81053 * 15.13499 * 11 10 8 34 34 H 1.09004 * 108.81073 * 256.86230 * 11 10 8 35 35 H 1.09002 * 107.75499 * 265.54832 * 12 11 10 36 36 H 1.09003 * 107.75373 * 149.82231 * 12 11 10 37 37 H 1.08999 * 111.07074 * 76.52472 * 15 13 12 38 38 H 1.08999 * 111.07648 * 312.54159 * 15 13 12 39 39 H 1.09000 * 110.36185 * 154.81648 * 16 15 13 40 40 H 1.09010 * 110.36203 * 277.01674 * 16 15 13 41 41 H 0.96997 * 120.00457 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.26377 * 108.00584 * 28 10 8 43 43 H 1.09003 * 108.17588 * 349.66482 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 0.0006 5 1 4.3841 1.2302 0.0004 6 6 3.6438 -0.6978 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8916 -2.5485 0.0013 9 8 1.0810 -2.9289 0.8241 10 7 2.3825 -3.4116 -0.9100 11 6 1.8450 -4.7591 -0.9758 12 6 1.5916 -5.2191 -2.3873 13 6 2.4273 -4.6340 -3.4714 14 1 1.7744 -4.4995 -4.3337 15 6 3.5515 -5.6069 -3.9118 16 6 4.4716 -4.6591 -4.7239 17 7 4.4082 -3.3684 -4.0116 18 6 5.3586 -2.3835 -4.0502 19 1 6.4029 -2.6438 -4.1404 20 6 4.9799 -1.0502 -3.9735 21 7 5.8596 -0.1351 -3.6252 22 14 3.2218 -0.5546 -4.3645 23 1 2.3927 -0.6614 -3.1371 24 1 3.2000 0.8464 -4.8561 25 1 2.6749 -1.4550 -5.4111 26 6 3.1446 -3.3216 -3.2497 27 1 2.5295 -2.5221 -3.6628 28 6 3.4404 -2.9928 -1.8038 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.5298 -1.3156 0.0121 33 1 0.9066 -4.7906 -0.4221 34 1 2.5515 -5.4427 -0.5048 35 1 0.5480 -5.0104 -2.6227 36 1 1.7235 -6.3008 -2.4131 37 1 3.1557 -6.4035 -4.5418 38 1 4.0755 -6.0169 -3.0485 39 1 5.4936 -5.0380 -4.7323 40 1 4.0997 -4.5505 -5.7428 41 1 5.5949 0.7965 -3.5712 42 1 4.3708 -3.4808 -1.5134 43 1 3.5627 -1.9143 -1.7041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042173632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:12 Heat of formation + Delta-G solvation = 76.606200 kcal Electronic energy + Delta-G solvation = -26964.841104 eV Core-core repulsion = 23433.647737 eV Total energy + Delta-G solvation = -3531.193367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28012 -39.87353 -38.18972 -35.23801 -33.62848 -32.77973 -31.91360 -30.24981 -29.55633 -28.87563 -27.77534 -25.12972 -24.19994 -23.03928 -22.02405 -20.62206 -20.31522 -19.40117 -18.36261 -17.26264 -16.85471 -16.63845 -15.76517 -15.58431 -15.14920 -14.80934 -14.38956 -14.15582 -13.74460 -13.61639 -13.35835 -13.06144 -12.87624 -12.70757 -12.43623 -12.34716 -12.14591 -12.04867 -11.94341 -11.41803 -11.29449 -10.97557 -10.75513 -10.66211 -10.54733 -10.17851 -10.02591 -9.94513 -9.62267 -9.47133 -9.23130 -8.70177 -8.40710 -8.19216 -7.00734 -6.14789 -3.54033 1.92302 2.47385 2.94958 3.20757 3.27804 3.41750 3.43297 3.61340 4.40108 4.65467 4.79136 4.85991 4.96760 4.98688 5.13646 5.29527 5.32532 5.40035 5.46557 5.62858 5.70258 5.75922 5.76513 5.80276 5.86015 5.90979 5.98597 6.01568 6.01960 6.17802 6.25600 6.34785 6.37522 6.51179 6.66907 6.67842 6.77599 6.82757 6.98395 7.37642 7.70314 7.75734 7.83226 8.17888 8.53004 8.70802 9.52055 10.09998 11.00340 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.008714 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.281653 B = 3212.365334 C = 4659.667481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.122 3.878 3 N -0.302 5.302 4 N -0.454 5.454 5 H 0.445 0.555 6 C 0.120 3.880 7 C -0.290 4.290 8 C 0.597 3.403 9 O -0.550 6.550 10 N -0.593 5.593 11 C 0.118 3.882 12 C -0.113 4.113 13 C -0.090 4.090 14 H 0.061 0.939 15 C -0.128 4.128 16 C 0.127 3.873 17 N -0.602 5.602 18 C -0.246 4.246 19 H 0.088 0.912 20 C 0.040 3.960 21 N -0.900 5.900 22 Si 0.869 3.131 23 H -0.275 1.275 24 H -0.303 1.303 25 H -0.276 1.276 26 C 0.150 3.850 27 H 0.028 0.972 28 C 0.096 3.904 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.187 0.813 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -6.182 5.154 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.046 4.046 3 N -0.125 5.125 4 N -0.158 5.158 5 H 0.290 0.710 6 C -0.033 4.033 7 C -0.305 4.305 8 C 0.386 3.614 9 O -0.428 6.428 10 N -0.325 5.325 11 C -0.005 4.005 12 C -0.151 4.151 13 C -0.110 4.110 14 H 0.080 0.920 15 C -0.166 4.166 16 C 0.002 3.998 17 N -0.328 5.328 18 C -0.373 4.373 19 H 0.105 0.895 20 C -0.160 4.160 21 N -0.542 5.542 22 Si 0.700 3.300 23 H -0.202 1.202 24 H -0.231 1.231 25 H -0.202 1.202 26 C 0.044 3.956 27 H 0.046 0.954 28 C -0.028 4.028 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.204 0.796 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.600 -4.878 5.554 9.910 hybrid contribution -0.325 -0.092 -0.634 0.718 sum -6.924 -4.971 4.920 9.842 Atomic orbital electron populations 1.20174 0.86346 1.03122 1.03281 1.22243 0.96902 0.88874 0.96569 1.77023 0.86536 1.22398 1.26565 1.45995 1.07496 1.05540 1.56818 0.70953 1.23142 0.98778 0.85593 0.95747 1.20050 0.92601 0.94306 1.23518 1.17386 0.80076 0.83746 0.80230 1.90701 1.35284 1.78558 1.38281 1.47008 1.38270 1.12262 1.34913 1.20592 1.00229 0.82978 0.96721 1.20409 0.99903 1.00882 0.93934 1.20449 0.96757 0.95763 0.98023 0.92014 1.22959 0.96756 0.96930 0.99970 1.21743 0.97569 0.86511 0.94007 1.44928 1.20445 1.16951 1.50500 1.18575 0.87818 0.83849 1.47058 0.89464 1.25267 0.96621 0.95522 0.98601 1.69816 1.34425 1.01438 1.48506 0.87103 0.86785 0.76432 0.79667 1.20225 1.23108 1.20208 1.20275 0.89430 0.94762 0.91149 0.95432 1.21543 0.88766 1.02363 0.90176 0.89955 0.90858 0.90567 0.79568 0.89377 0.92431 0.92336 0.90745 0.91548 0.91364 0.93296 0.95681 0.92739 0.90990 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.28 36.00 0.37 -0.67 16 2 C 0.12 2.20 7.26 -82.02 -0.60 1.60 16 3 N -0.30 -5.44 12.63 33.89 0.43 -5.01 16 4 N -0.45 -7.37 7.29 30.85 0.22 -7.14 16 5 H 0.45 5.87 8.96 -182.72 -1.64 4.23 16 6 C 0.12 2.03 9.67 -16.56 -0.16 1.87 16 7 C -0.29 -5.36 5.05 -105.07 -0.53 -5.89 16 8 C 0.60 11.20 7.20 -12.52 -0.09 11.11 16 9 O -0.55 -11.01 16.43 5.27 0.09 -10.93 16 10 N -0.59 -10.50 3.03 -179.93 -0.54 -11.04 16 11 C 0.12 1.74 6.30 -5.92 -0.04 1.70 16 12 C -0.11 -1.52 5.55 -29.95 -0.17 -1.68 16 13 C -0.09 -1.48 2.63 -92.47 -0.24 -1.72 16 14 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 15 C -0.13 -1.90 6.24 -24.55 -0.15 -2.05 16 16 C 0.13 2.35 7.26 -2.38 -0.02 2.33 16 17 N -0.60 -13.47 2.73 -164.76 -0.45 -13.92 16 18 C -0.25 -6.37 10.03 -15.06 -0.15 -6.52 16 19 H 0.09 2.43 8.06 -52.48 -0.42 2.01 16 20 C 0.04 1.08 5.04 -17.43 -0.09 0.99 16 21 N -0.90 -25.02 13.97 55.49 0.78 -24.25 16 22 Si 0.87 22.05 23.79 -169.99 -4.04 18.00 16 23 H -0.28 -6.92 6.51 56.52 0.37 -6.55 16 24 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 25 H -0.28 -7.11 7.07 56.52 0.40 -6.71 16 26 C 0.15 3.07 2.27 -69.13 -0.16 2.92 16 27 H 0.03 0.66 3.69 -51.93 -0.19 0.46 16 28 C 0.10 1.87 4.67 -5.92 -0.03 1.84 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 32 H 0.19 2.79 7.68 -52.48 -0.40 2.39 16 33 H 0.09 1.30 6.97 -51.93 -0.36 0.93 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 36 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 43 H 0.09 1.96 2.86 -51.93 -0.15 1.81 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -31.74 333.49 -7.92 -39.65 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.37 Total: 3.78 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.05 Total: 5.83 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.43 Total: -61.36 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.04 Total: 18.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.74 -7.92 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042173632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.261 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds