Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30451 * 125.98780 * 2 1 4 4 N 1.39931 * 108.89793 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.75188 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.48738 * 359.75218 * 4 3 2 7 7 C 1.38039 * 107.42267 * 0.39278 * 6 4 3 8 8 C 1.47427 * 126.41457 * 179.87412 * 7 6 4 9 9 O 1.21608 * 119.99745 * 128.32615 * 8 7 6 10 10 N 1.34773 * 120.00183 * 308.31977 * 8 7 6 11 11 C 1.45227 * 119.34073 * 185.60027 * 10 8 7 12 12 C 1.50609 * 112.83619 * 135.99603 * 11 10 8 13 13 C 1.48863 * 117.90614 * 27.68728 * 12 11 10 14 14 H 1.08997 * 106.75641 * 217.68943 * 13 12 11 15 15 C 1.55056 * 111.54310 * 101.51156 * 13 12 11 16 16 C 1.55061 * 101.27012 * 194.53423 * 15 13 12 17 17 N 1.47554 * 104.85112 * 35.96713 * 16 15 13 18 18 C 1.36932 * 125.85284 * 156.09346 * 17 16 15 19 19 H 1.08006 * 120.00854 * 326.55093 * 18 17 16 20 20 C 1.38815 * 119.99922 * 146.55589 * 18 17 16 21 21 N 1.31620 * 120.00455 * 160.38892 * 20 18 17 22 22 Si 1.86803 * 119.99719 * 340.38681 * 20 18 17 23 23 H 1.48504 * 109.47146 * 87.35323 * 22 20 18 24 24 H 1.48499 * 109.47288 * 207.35223 * 22 20 18 25 25 H 1.48493 * 109.47123 * 327.35316 * 22 20 18 26 26 C 1.47617 * 108.28338 * 336.11574 * 17 16 15 27 27 H 1.09004 * 108.10242 * 244.72441 * 26 17 16 28 28 C 1.44681 * 119.91388 * 5.98806 * 10 8 7 29 29 H 1.08997 * 109.47627 * 270.04281 * 1 2 3 30 30 H 1.09004 * 109.47638 * 30.04150 * 1 2 3 31 31 H 1.09006 * 109.46899 * 150.04217 * 1 2 3 32 32 H 1.08012 * 126.28535 * 180.24373 * 6 4 3 33 33 H 1.09004 * 108.81053 * 15.13499 * 11 10 8 34 34 H 1.09004 * 108.81073 * 256.86230 * 11 10 8 35 35 H 1.09002 * 107.75499 * 265.54832 * 12 11 10 36 36 H 1.09003 * 107.75373 * 149.82231 * 12 11 10 37 37 H 1.08999 * 111.07074 * 76.52472 * 15 13 12 38 38 H 1.08999 * 111.07648 * 312.54159 * 15 13 12 39 39 H 1.09000 * 110.36185 * 154.81648 * 16 15 13 40 40 H 1.09010 * 110.36203 * 277.01674 * 16 15 13 41 41 H 0.96997 * 120.00457 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.26377 * 108.00584 * 28 10 8 43 43 H 1.09003 * 108.17588 * 349.66482 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 0.0006 5 1 4.3841 1.2302 0.0004 6 6 3.6438 -0.6978 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8916 -2.5485 0.0013 9 8 1.0810 -2.9289 0.8241 10 7 2.3825 -3.4116 -0.9100 11 6 1.8450 -4.7591 -0.9758 12 6 1.5916 -5.2191 -2.3873 13 6 2.4273 -4.6340 -3.4714 14 1 1.7744 -4.4995 -4.3337 15 6 3.5515 -5.6069 -3.9118 16 6 4.4716 -4.6591 -4.7239 17 7 4.4082 -3.3684 -4.0116 18 6 5.3586 -2.3835 -4.0502 19 1 6.4029 -2.6438 -4.1404 20 6 4.9799 -1.0502 -3.9735 21 7 5.8596 -0.1351 -3.6252 22 14 3.2218 -0.5546 -4.3645 23 1 2.3927 -0.6614 -3.1371 24 1 3.2000 0.8464 -4.8561 25 1 2.6749 -1.4550 -5.4111 26 6 3.1446 -3.3216 -3.2497 27 1 2.5295 -2.5221 -3.6628 28 6 3.4404 -2.9928 -1.8038 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.5298 -1.3156 0.0121 33 1 0.9066 -4.7906 -0.4221 34 1 2.5515 -5.4427 -0.5048 35 1 0.5480 -5.0104 -2.6227 36 1 1.7235 -6.3008 -2.4131 37 1 3.1557 -6.4035 -4.5418 38 1 4.0755 -6.0169 -3.0485 39 1 5.4936 -5.0380 -4.7323 40 1 4.0997 -4.5505 -5.7428 41 1 5.5949 0.7965 -3.5712 42 1 4.3708 -3.4808 -1.5134 43 1 3.5627 -1.9143 -1.7041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042173632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 54.879991 kcal Electronic energy + Delta-G solvation = -26965.783223 eV Core-core repulsion = 23433.647737 eV Total energy + Delta-G solvation = -3532.135486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63311 -41.26353 -39.65831 -36.71415 -35.19980 -34.07181 -33.65086 -31.70176 -31.02542 -30.35167 -29.01996 -26.65333 -25.82512 -24.41884 -23.38752 -22.07206 -21.82119 -20.74381 -19.72016 -18.99446 -18.42058 -18.01385 -17.43038 -16.95822 -16.55450 -16.27677 -15.79344 -15.45059 -15.29121 -15.11345 -14.97818 -14.70136 -14.22813 -14.06700 -13.79466 -13.74235 -13.59746 -13.54536 -13.18938 -12.96425 -12.81854 -12.57093 -12.38149 -12.25527 -12.03862 -11.82433 -11.43439 -11.40904 -11.08520 -10.99816 -10.71947 -10.55867 -9.81942 -9.57814 -8.85015 -8.24901 -5.57607 0.57349 1.09137 1.22092 1.32461 1.36103 1.65870 1.85985 2.22604 2.32618 2.98436 3.26873 3.46688 3.60948 3.68047 3.75843 3.94371 3.99725 4.14116 4.17620 4.21685 4.34192 4.44263 4.48642 4.62131 4.65975 4.66389 4.77209 4.82483 4.88831 4.91473 4.93971 5.02099 5.08478 5.14220 5.33637 5.38255 5.44399 5.48604 5.63177 5.82379 6.12724 6.14726 6.31651 6.47390 6.78100 7.11892 7.50945 8.16989 8.94073 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.008714 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.281653 B = 3212.365334 C = 4659.667481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.108 3.892 3 N -0.319 5.319 4 N -0.449 5.449 5 H 0.456 0.544 6 C 0.123 3.877 7 C -0.316 4.316 8 C 0.598 3.402 9 O -0.566 6.566 10 N -0.591 5.591 11 C 0.111 3.889 12 C -0.109 4.109 13 C -0.090 4.090 14 H 0.061 0.939 15 C -0.109 4.109 16 C 0.116 3.884 17 N -0.618 5.618 18 C -0.229 4.229 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.929 5.929 22 Si 0.917 3.083 23 H -0.277 1.277 24 H -0.320 1.320 25 H -0.284 1.284 26 C 0.147 3.853 27 H -0.003 1.003 28 C 0.109 3.891 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.201 0.799 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -8.599 5.310 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 N -0.143 5.143 4 N -0.155 5.155 5 H 0.303 0.697 6 C -0.031 4.031 7 C -0.331 4.331 8 C 0.386 3.614 9 O -0.446 6.446 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.147 4.147 13 C -0.109 4.109 14 H 0.080 0.920 15 C -0.147 4.147 16 C -0.008 4.008 17 N -0.344 5.344 18 C -0.358 4.358 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.574 5.574 22 Si 0.750 3.250 23 H -0.204 1.204 24 H -0.250 1.250 25 H -0.210 1.210 26 C 0.040 3.960 27 H 0.014 0.986 28 C -0.016 4.016 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.727 -7.330 5.700 12.080 hybrid contribution 0.096 0.615 -0.717 0.949 sum -7.631 -6.716 4.983 11.321 Atomic orbital electron populations 1.20272 0.84527 1.03549 1.04453 1.22778 0.98336 0.88695 0.96148 1.76973 0.87172 1.22844 1.27315 1.46058 1.07576 1.05653 1.56183 0.69670 1.23377 0.98949 0.85911 0.94816 1.20274 0.93349 0.94637 1.24838 1.17411 0.79849 0.83909 0.80181 1.90681 1.36078 1.78889 1.38937 1.47034 1.37740 1.13371 1.34051 1.20876 1.00669 0.81550 0.98011 1.20409 0.99640 1.02795 0.91862 1.20478 0.97165 0.93954 0.99319 0.92025 1.22924 0.95059 0.96448 1.00247 1.21975 0.98963 0.85575 0.94330 1.45085 1.20264 1.17429 1.51633 1.18470 0.87783 0.84655 1.44907 0.91887 1.25510 0.97864 0.95762 0.99654 1.69874 1.35331 1.01540 1.50642 0.86361 0.84985 0.74705 0.78953 1.20351 1.24982 1.21011 1.20346 0.88265 0.96420 0.90936 0.98559 1.21228 0.89151 1.01138 0.90090 0.88364 0.89520 0.90952 0.78243 0.89215 0.90607 0.91475 0.86953 0.87814 0.90174 0.93029 0.95865 0.92956 0.91316 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.28 71.23 0.73 -1.27 16 2 C 0.11 3.86 7.26 43.51 0.32 4.17 16 3 N -0.32 -11.48 12.63 -46.68 -0.59 -12.06 16 4 N -0.45 -14.61 7.29 -56.31 -0.41 -15.02 16 5 H 0.46 12.09 8.96 -213.42 -1.91 10.18 16 6 C 0.12 4.15 9.67 84.27 0.81 4.97 16 7 C -0.32 -11.60 5.05 -20.15 -0.10 -11.70 16 8 C 0.60 21.85 7.20 86.66 0.62 22.47 16 9 O -0.57 -22.02 16.43 -4.05 -0.07 -22.09 16 10 N -0.59 -19.89 3.03 -841.42 -2.55 -22.44 16 11 C 0.11 2.90 6.30 85.84 0.54 3.44 16 12 C -0.11 -2.45 5.55 28.51 0.16 -2.29 16 13 C -0.09 -2.62 2.63 -11.99 -0.03 -2.65 16 14 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 15 C -0.11 -2.74 6.24 32.00 0.20 -2.54 16 16 C 0.12 4.02 7.26 86.88 0.63 4.65 16 17 N -0.62 -27.02 2.73 -675.18 -1.85 -28.86 16 18 C -0.23 -11.95 10.03 84.04 0.84 -11.11 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 20 C 0.01 0.53 5.04 84.86 0.43 0.96 16 21 N -0.93 -52.58 13.97 21.65 0.30 -52.27 16 22 Si 0.92 46.67 23.79 68.60 1.63 48.30 16 23 H -0.28 -13.94 6.51 99.48 0.65 -13.30 16 24 H -0.32 -17.01 7.11 99.48 0.71 -16.30 16 25 H -0.28 -14.54 7.07 99.48 0.70 -13.83 16 26 C 0.15 5.77 2.27 43.60 0.10 5.87 16 27 H 0.00 -0.13 3.69 -2.38 -0.01 -0.14 16 28 C 0.11 4.13 4.67 86.13 0.40 4.53 16 29 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.11 8.01 -2.38 -0.02 2.09 16 32 H 0.20 5.98 7.68 -2.90 -0.02 5.96 16 33 H 0.09 2.37 6.97 -2.39 -0.02 2.35 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 36 H 0.11 1.75 7.65 -2.39 -0.02 1.74 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.02 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 43 H 0.07 3.04 2.86 -2.39 -0.01 3.04 16 Total: -1.00 -68.80 333.49 1.19 -67.60 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.93 Total: 17.34 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 5.65 Total: 19.51 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.09 Total: -130.66 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.07 Total: -22.09 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.63 Total: 48.30 kcal Total: -68.80 1.19 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042173632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.483 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds