Wall clock time and date at job start Fri Apr 10 2020 17:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46648 * 239.99836 * 3 2 1 5 5 H 1.48506 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47309 * 119.99398 * 3 2 1 7 7 C 1.38816 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.48151 * 126.39391 * 0.02562 * 9 7 2 11 11 C 1.55302 * 107.04275 * 184.96713 * 10 9 7 12 12 C 1.53706 * 101.81303 * 22.44987 * 11 10 9 13 13 H 1.08997 * 111.10652 * 79.36178 * 12 11 10 14 14 C 1.51975 * 115.00444 * 206.54203 * 12 11 10 15 15 C 1.53886 * 107.28934 * 175.44291 * 14 12 11 16 16 N 1.46597 * 110.71108 * 308.19303 * 15 14 12 17 17 C 1.34774 * 119.74722 * 227.73944 * 16 15 14 18 18 O 1.21281 * 119.99835 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00506 * 0.02562 * 17 16 15 20 20 C 1.50698 * 109.47412 * 180.02562 * 19 17 16 21 21 C 1.34668 * 126.58959 * 274.68264 * 20 19 17 22 22 N 1.34133 * 108.02113 * 179.87528 * 21 20 19 23 23 C 1.30499 * 109.25167 * 0.40437 * 22 21 20 24 24 N 1.35041 * 108.70422 * 359.74974 * 23 22 21 25 25 H 0.96997 * 126.40035 * 179.97438 * 24 23 22 26 26 C 1.47792 * 120.49842 * 47.75812 * 16 15 14 27 27 C 1.45264 * 126.31146 * 179.97438 * 9 7 2 28 28 H 1.09001 * 108.98169 * 266.38427 * 27 9 7 29 29 H 0.96996 * 120.00720 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.91967 * 65.62677 * 10 9 7 31 31 H 1.08999 * 110.09583 * 304.41301 * 10 9 7 32 32 H 1.09000 * 110.96386 * 264.32097 * 11 10 9 33 33 H 1.08995 * 110.99142 * 140.58899 * 11 10 9 34 34 H 1.09002 * 109.89628 * 55.99494 * 14 12 11 35 35 H 1.09008 * 109.88913 * 294.88528 * 14 12 11 36 36 H 1.08997 * 109.23220 * 187.87100 * 15 14 12 37 37 H 1.09002 * 109.19412 * 68.48674 * 15 14 12 38 38 H 1.09002 * 109.47069 * 300.00500 * 19 17 16 39 39 H 1.09000 * 109.47032 * 59.99787 * 19 17 16 40 40 H 1.07999 * 125.98929 * 0.03481 * 21 20 19 41 41 H 1.08003 * 125.65029 * 179.77904 * 23 22 21 42 42 H 1.09002 * 110.06559 * 67.94534 * 26 16 15 43 43 H 1.09003 * 110.06613 * 189.40375 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5532 -0.0005 11 6 -0.4343 -4.0739 0.1285 12 6 0.8678 -4.5876 0.7634 13 1 0.8845 -4.3942 1.8360 14 6 1.1974 -6.0412 0.4664 15 6 2.5769 -6.3325 1.0831 16 7 3.5600 -5.3356 0.6489 17 6 4.7634 -5.7371 0.1941 18 8 5.5804 -4.9162 -0.1659 19 6 5.0941 -7.2061 0.1329 20 6 6.4896 -7.3848 -0.4073 21 6 6.8474 -7.4393 -1.7044 22 7 8.1775 -7.6035 -1.7614 23 6 8.6562 -7.6614 -0.5487 24 7 7.6362 -7.5290 0.3263 25 1 7.7035 -7.5354 1.2939 26 6 3.2415 -3.8935 0.7064 27 6 1.9093 -3.7183 0.0005 28 1 1.9923 -4.0691 -1.0282 29 1 -0.4851 0.8399 -0.0004 30 1 -0.5621 -2.1747 -0.9345 31 1 -0.5839 -2.0196 0.8434 32 1 -0.5949 -4.5248 -0.8508 33 1 -1.2859 -4.2559 0.7839 34 1 1.2317 -6.2010 -0.6113 35 1 0.4459 -6.6910 0.9150 36 1 2.9079 -7.3229 0.7707 37 1 2.4961 -6.3074 2.1699 38 1 5.0346 -7.6339 1.1336 39 1 4.3835 -7.7115 -0.5211 40 1 6.1807 -7.3617 -2.5505 41 1 9.6961 -7.7928 -0.2881 42 1 3.1603 -3.5696 1.7440 43 1 4.0140 -3.3192 0.1951 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042246462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:16 Heat of formation + Delta-G solvation = 57.510312 kcal Electronic energy + Delta-G solvation = -25318.808474 eV Core-core repulsion = 21786.787047 eV Total energy + Delta-G solvation = -3532.021427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14320 -40.13878 -38.23873 -35.41634 -33.01257 -32.88473 -32.05908 -31.22202 -29.50420 -28.55668 -26.97180 -24.71382 -23.68739 -22.28555 -21.70995 -21.12759 -20.16621 -19.80079 -19.05871 -17.86469 -17.18027 -16.51444 -15.62070 -15.51630 -14.85019 -14.79682 -14.48882 -14.34803 -13.99235 -13.64374 -13.59654 -13.34131 -13.20708 -12.93847 -12.77034 -12.27645 -12.26020 -11.88420 -11.51405 -11.34028 -10.95717 -10.82710 -10.74405 -10.17609 -10.12479 -10.08785 -9.99218 -9.89112 -9.74287 -9.64070 -9.48882 -8.62874 -8.46087 -8.45568 -6.86105 -5.72174 -3.06070 1.88197 2.69371 2.92946 3.06550 3.25229 3.42750 3.46895 3.48710 4.41775 4.50799 4.58143 4.69641 4.78004 4.82596 4.94814 5.11148 5.15651 5.32437 5.37656 5.45001 5.53844 5.59847 5.65660 5.74465 5.88197 5.98501 6.04562 6.07473 6.10584 6.14289 6.36231 6.45378 6.54305 6.63511 6.68967 6.72986 7.03695 7.23775 7.51857 7.55039 7.60170 7.80554 7.96867 8.22717 8.29323 9.18910 9.81999 10.48120 11.40079 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.003827 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.083317 B = 7314.976804 C = 8571.321579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.508 3.492 18 O -0.529 6.529 19 C -0.064 4.064 20 C -0.004 4.004 21 C -0.007 4.007 22 N -0.494 5.494 23 C 0.183 3.817 24 N -0.564 5.564 25 H 0.417 0.583 26 C 0.117 3.883 27 C 0.158 3.842 28 H 0.024 0.976 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.207 0.793 42 H 0.069 0.931 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -19.710 4.895 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.294 3.706 18 O -0.405 6.405 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.156 4.156 22 N -0.213 5.213 23 C -0.100 4.100 24 N -0.167 5.167 25 H 0.254 0.746 26 C -0.005 4.005 27 C 0.049 3.951 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.185 0.815 41 H 0.223 0.777 42 H 0.087 0.913 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.336 -19.045 3.919 20.782 hybrid contribution -0.096 1.019 1.275 1.635 sum 7.240 -18.027 5.194 20.109 Atomic orbital electron populations 1.69924 1.04895 1.25214 1.56883 1.24774 0.95666 0.97640 1.02056 0.86228 0.78505 0.83200 0.78051 1.21066 1.21590 1.21124 1.18999 0.90402 0.82315 1.44099 0.90358 1.44110 1.01663 0.99250 1.86701 1.21535 0.83650 0.88478 1.01007 1.22731 0.95976 0.99679 0.99270 1.22311 0.97463 0.93407 1.00110 0.90536 1.21814 0.95233 0.97538 1.01324 1.21752 0.89542 0.91074 0.99216 1.48293 1.13938 1.07949 1.63876 1.20449 0.81964 0.90536 0.77660 1.90750 1.47707 1.54756 1.47322 1.20103 0.91980 0.95150 1.03314 1.20495 0.88094 1.10863 0.92552 1.22030 0.92122 1.06503 0.94903 1.70268 1.09625 1.19304 1.22133 1.24901 0.94837 1.05630 0.84668 1.43175 1.07346 1.55973 1.10183 0.74557 1.21715 0.99142 0.78351 1.01320 1.20975 0.90946 0.87631 0.95586 0.95853 0.93693 0.94450 0.92649 0.92537 0.92246 0.91288 0.90823 0.90351 0.91681 0.88412 0.86506 0.81545 0.77699 0.91285 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.44 55.49 0.58 -26.37 16 2 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.38 9.87 -15.06 -0.15 -6.53 16 8 H 0.08 2.14 7.41 -52.49 -0.39 1.75 16 9 N -0.59 -14.83 3.34 -162.92 -0.54 -15.37 16 10 C 0.18 4.20 5.45 -1.91 -0.01 4.19 16 11 C -0.14 -2.44 6.54 -25.14 -0.16 -2.60 16 12 C -0.11 -1.83 2.61 -89.37 -0.23 -2.06 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.12 -1.39 5.73 -26.79 -0.15 -1.55 16 15 C 0.11 1.09 6.22 -3.53 -0.02 1.07 16 16 N -0.61 -8.61 3.01 -172.75 -0.52 -9.13 16 17 C 0.51 7.32 7.67 -10.99 -0.08 7.23 16 18 O -0.53 -10.23 15.40 5.56 0.09 -10.14 16 19 C -0.06 -0.60 4.59 -29.04 -0.13 -0.74 16 20 C 0.00 -0.05 5.73 -81.60 -0.47 -0.52 16 21 C -0.01 -0.10 11.79 -17.81 -0.21 -0.31 16 22 N -0.49 -6.87 11.25 -14.66 -0.16 -7.04 16 23 C 0.18 1.88 13.04 -90.38 -1.18 0.70 16 24 N -0.56 -5.25 6.15 -10.30 -0.06 -5.32 16 25 H 0.42 2.50 8.96 -40.82 -0.37 2.13 16 26 C 0.12 2.17 5.69 -3.95 -0.02 2.15 16 27 C 0.16 3.17 2.75 -67.81 -0.19 2.99 16 28 H 0.02 0.52 7.95 -51.93 -0.41 0.11 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 31 H 0.06 1.45 7.21 -51.93 -0.37 1.07 16 32 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.08 0.54 5.84 -51.93 -0.30 0.23 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.63 7.99 -51.93 -0.42 0.21 16 39 H 0.12 0.85 7.55 -51.93 -0.39 0.46 16 40 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.21 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.96 6.76 -51.93 -0.35 1.61 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -35.92 342.35 -9.94 -45.86 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.34 Total: 1.18 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -3.11 Total: 3.78 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.71 Total: -63.22 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.92 -9.94 -45.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.370 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds