Wall clock time and date at job start Fri Apr 10 2020 17:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35557 * 125.82415 * 2 1 4 4 N 1.35401 * 107.16194 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.44498 * 180.02562 * 4 3 2 6 6 C 1.36669 * 107.12283 * 0.02562 * 4 3 2 7 7 C 1.47406 * 125.86769 * 180.26068 * 6 4 3 8 8 O 1.21612 * 119.99750 * 6.99524 * 7 6 4 9 9 N 1.34775 * 120.00212 * 186.99827 * 7 6 4 10 10 C 1.47157 * 121.22116 * 6.88454 * 9 7 6 11 11 C 1.52833 * 107.97683 * 122.70380 * 10 9 7 12 12 C 1.53090 * 110.58614 * 57.34368 * 11 10 9 13 13 H 1.09000 * 112.48836 * 71.38223 * 12 11 10 14 14 C 1.56026 * 106.39155 * 195.44525 * 12 11 10 15 15 C 1.54504 * 102.61147 * 78.38513 * 14 12 11 16 16 N 1.47425 * 107.14822 * 22.85111 * 15 14 12 17 17 C 1.36943 * 126.05881 * 181.57450 * 16 15 14 18 18 H 1.08004 * 119.99623 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99959 * 0.02836 * 17 16 15 20 20 N 1.31619 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47111 * 60.00135 * 21 19 17 23 23 H 1.48509 * 109.46944 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47577 * 299.99890 * 21 19 17 25 25 C 1.46472 * 107.88413 * 1.61005 * 16 15 14 26 26 H 1.09002 * 108.41961 * 89.91125 * 25 16 15 27 27 C 1.46758 * 121.22178 * 186.60604 * 9 7 6 28 28 N 1.31618 * 108.26790 * 359.97438 * 6 4 3 29 29 H 1.08998 * 109.47062 * 269.99330 * 1 2 3 30 30 H 1.08999 * 109.47267 * 29.99686 * 1 2 3 31 31 H 1.09009 * 109.47184 * 150.00129 * 1 2 3 32 32 H 1.07997 * 126.42226 * 359.94798 * 3 2 1 33 33 H 1.08994 * 109.75905 * 242.32533 * 10 9 7 34 34 H 1.08998 * 109.75631 * 3.03359 * 10 9 7 35 35 H 1.09006 * 109.24952 * 177.62998 * 11 10 9 36 36 H 1.08997 * 109.25417 * 297.09337 * 11 10 9 37 37 H 1.09000 * 110.78148 * 196.66503 * 14 12 11 38 38 H 1.09002 * 110.77989 * 319.91473 * 14 12 11 39 39 H 1.08998 * 109.90039 * 142.23311 * 15 14 12 40 40 H 1.09007 * 109.90123 * 263.29164 * 15 14 12 41 41 H 0.97000 * 120.00008 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.22643 * 352.86173 * 27 9 7 43 43 H 1.09000 * 109.22697 * 112.22148 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6658 0.0006 5 1 4.3789 1.2208 0.0011 6 6 3.5465 -0.7003 0.0003 7 6 4.7174 -1.5958 0.0062 8 8 5.8347 -1.1348 0.1402 9 7 4.5497 -2.9254 -0.1369 10 6 3.2310 -3.4986 -0.4499 11 6 3.3616 -4.3047 -1.7418 12 6 4.4330 -5.3882 -1.5941 13 1 4.1181 -6.1991 -0.9373 14 6 4.7701 -5.8738 -3.0380 15 6 5.6954 -4.7535 -3.5633 16 7 6.2777 -4.0833 -2.3864 17 6 7.1315 -3.0128 -2.4088 18 1 7.5010 -2.5974 -1.4829 19 6 7.5221 -2.4618 -3.6215 20 7 7.0722 -2.9685 -4.7499 21 14 8.6861 -1.0012 -3.6520 22 1 9.9664 -1.3748 -2.9988 23 1 8.9462 -0.6048 -5.0594 24 1 8.0718 0.1369 -2.9222 25 6 5.7820 -4.7658 -1.1890 26 1 6.4727 -5.5718 -0.9411 27 6 5.6767 -3.8542 0.0078 28 7 2.2860 -1.0792 0.0002 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8901 -0.5139 32 1 1.9711 2.1277 -0.0008 33 1 2.9113 -4.1522 0.3616 34 1 2.5041 -2.6978 -0.5862 35 1 2.4048 -4.7740 -1.9708 36 1 3.6379 -3.6355 -2.5566 37 1 5.2950 -6.8287 -3.0122 38 1 3.8658 -5.9476 -3.6422 39 1 6.4880 -5.1836 -4.1755 40 1 5.1177 -4.0406 -4.1517 41 1 7.3454 -2.5837 -5.5974 42 1 6.6009 -3.2847 0.1059 43 1 5.5313 -4.4583 0.9034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042263525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:25 Heat of formation + Delta-G solvation = 67.061056 kcal Electronic energy + Delta-G solvation = -26545.091400 eV Core-core repulsion = 23013.484124 eV Total energy + Delta-G solvation = -3531.607275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25328 -39.66879 -37.86627 -35.02851 -33.21826 -32.74636 -31.59424 -30.86037 -29.10783 -28.26794 -27.01809 -24.71492 -24.26377 -22.48362 -22.35219 -20.41817 -20.05935 -19.87500 -18.56215 -17.55989 -16.50368 -16.25800 -15.61920 -15.37471 -14.80372 -14.36851 -14.12820 -14.05927 -13.82577 -13.61152 -13.28799 -13.00159 -12.77848 -12.65508 -12.51271 -12.28624 -11.89878 -11.57675 -11.34159 -11.22724 -10.78945 -10.74078 -10.67187 -10.14948 -10.11460 -9.98756 -9.85796 -9.75447 -9.59712 -9.45969 -9.04650 -8.47765 -8.44748 -8.01885 -6.70479 -5.58757 -2.90190 1.54007 2.61826 2.75566 3.49650 3.52113 3.56679 3.63268 3.75237 4.32860 4.61673 4.87620 5.01460 5.15997 5.23342 5.38881 5.48599 5.60257 5.63864 5.66901 5.72088 5.82295 5.85971 5.91168 5.96039 6.04321 6.10641 6.20936 6.33012 6.37768 6.40601 6.51744 6.62493 6.69899 6.78302 6.83023 7.09129 7.14552 7.27297 7.69594 7.71121 7.75437 7.95208 7.96816 8.36309 8.56326 9.34945 9.95782 10.60938 11.53703 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.006374 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.610316 B = 4391.732111 C = 5547.611260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.008 4.008 3 C -0.033 4.033 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.174 3.826 7 C 0.604 3.396 8 O -0.536 6.536 9 N -0.565 5.565 10 C 0.077 3.923 11 C -0.120 4.120 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.144 4.144 15 C 0.179 3.821 16 N -0.588 5.588 17 C -0.210 4.210 18 H 0.082 0.918 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.155 3.845 26 H 0.028 0.972 27 C 0.113 3.887 28 N -0.442 5.442 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.182 0.818 33 H 0.058 0.942 34 H 0.139 0.861 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.249 0.751 42 H 0.095 0.905 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 2.651 9.862 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.141 4.141 3 C -0.172 4.172 4 N -0.124 5.124 5 H 0.270 0.730 6 C -0.089 4.089 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.296 5.296 10 C -0.046 4.046 11 C -0.159 4.159 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.314 5.314 17 C -0.338 4.338 18 H 0.100 0.900 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.214 1.214 25 C 0.046 3.954 26 H 0.045 0.955 27 C -0.010 4.010 28 N -0.165 5.165 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.200 0.800 33 H 0.076 0.924 34 H 0.155 0.845 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.049 2.205 9.756 16.442 hybrid contribution 1.286 1.874 -0.284 2.291 sum -11.763 4.079 9.472 15.643 Atomic orbital electron populations 1.20032 0.87239 1.02877 1.02195 1.20979 0.96946 0.88344 1.07782 1.22624 0.83108 1.00843 1.10630 1.42895 1.09182 1.07694 1.52671 0.72985 1.22890 0.93785 0.82245 1.09950 1.16375 0.85123 0.81747 0.77931 1.90833 1.23830 1.75201 1.51296 1.47402 1.10691 1.04251 1.67243 1.22687 0.85219 1.00337 0.96334 1.21820 0.97707 0.97783 0.98549 1.22395 0.95715 0.96859 0.97249 0.90680 1.23166 0.99799 0.99546 0.95733 1.21194 0.93688 0.90718 0.88955 1.44292 1.52857 1.34940 0.99291 1.19017 1.17710 1.04258 0.92852 0.90044 1.24698 1.00869 0.99538 0.95423 1.69956 1.48323 1.42818 0.96423 0.86267 0.80944 0.83012 0.76046 1.21286 1.21944 1.21355 1.20601 0.93001 0.93151 0.88640 0.95488 1.21426 0.90309 0.91773 0.97460 1.69854 0.99414 1.29413 1.17857 0.91398 0.91315 0.90931 0.80045 0.92391 0.84463 0.92157 0.90552 0.92856 0.92336 0.94190 0.93794 0.94077 0.88643 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.20 16 2 C -0.01 -0.10 7.07 -83.00 -0.59 -0.68 16 3 C -0.03 -0.37 11.91 -16.94 -0.20 -0.57 16 4 N -0.52 -7.24 6.15 -10.78 -0.07 -7.30 16 5 H 0.43 5.27 8.96 -40.82 -0.37 4.91 16 6 C 0.17 2.97 7.69 -154.52 -1.19 1.79 16 7 C 0.60 12.19 7.70 -12.53 -0.10 12.09 16 8 O -0.54 -12.30 16.56 5.27 0.09 -12.21 16 9 N -0.57 -10.75 2.97 -175.64 -0.52 -11.27 16 10 C 0.08 1.26 6.18 -3.77 -0.02 1.23 16 11 C -0.12 -2.07 5.04 -26.77 -0.14 -2.20 16 12 C -0.10 -1.79 3.68 -88.43 -0.33 -2.11 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.14 -2.71 6.32 -24.32 -0.15 -2.87 16 15 C 0.18 4.39 4.61 -2.75 -0.01 4.38 16 16 N -0.59 -14.93 3.19 -164.68 -0.53 -15.46 16 17 C -0.21 -5.97 9.69 -15.06 -0.15 -6.12 16 18 H 0.08 2.35 6.49 -52.48 -0.34 2.01 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.93 -28.03 10.38 55.49 0.58 -27.46 16 21 Si 0.91 23.64 29.55 -169.99 -5.02 18.62 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 25 C 0.15 3.18 2.96 -68.53 -0.20 2.97 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 C 0.11 2.19 5.66 -5.00 -0.03 2.16 16 28 N -0.44 -6.89 7.68 -7.50 -0.06 -6.95 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.14 2.28 4.11 -61.93 -0.25 2.02 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.62 6.85 -51.93 -0.36 1.26 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 39 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 40 H 0.04 1.21 7.05 -51.92 -0.37 0.84 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 2.10 5.49 -51.93 -0.29 1.82 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -34.25 336.39 -9.42 -43.67 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.14 Total: 3.82 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -2.82 Total: 9.48 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.60 Total: -68.45 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.02 Total: 18.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.25 -9.42 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042263525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.731 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds