Wall clock time and date at job start Fri Apr 10 2020 17:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35557 * 125.82415 * 2 1 4 4 N 1.35401 * 107.16194 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.44498 * 180.02562 * 4 3 2 6 6 C 1.36669 * 107.12283 * 0.02562 * 4 3 2 7 7 C 1.47406 * 125.86769 * 180.26068 * 6 4 3 8 8 O 1.21612 * 119.99750 * 6.99524 * 7 6 4 9 9 N 1.34775 * 120.00212 * 186.99827 * 7 6 4 10 10 C 1.47157 * 121.22116 * 6.88454 * 9 7 6 11 11 C 1.52833 * 107.97683 * 122.70380 * 10 9 7 12 12 C 1.53090 * 110.58614 * 57.34368 * 11 10 9 13 13 H 1.09000 * 112.48836 * 71.38223 * 12 11 10 14 14 C 1.56026 * 106.39155 * 195.44525 * 12 11 10 15 15 C 1.54504 * 102.61147 * 78.38513 * 14 12 11 16 16 N 1.47425 * 107.14822 * 22.85111 * 15 14 12 17 17 C 1.36943 * 126.05881 * 181.57450 * 16 15 14 18 18 H 1.08004 * 119.99623 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99959 * 0.02836 * 17 16 15 20 20 N 1.31619 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47111 * 60.00135 * 21 19 17 23 23 H 1.48509 * 109.46944 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47577 * 299.99890 * 21 19 17 25 25 C 1.46472 * 107.88413 * 1.61005 * 16 15 14 26 26 H 1.09002 * 108.41961 * 89.91125 * 25 16 15 27 27 C 1.46758 * 121.22178 * 186.60604 * 9 7 6 28 28 N 1.31618 * 108.26790 * 359.97438 * 6 4 3 29 29 H 1.08998 * 109.47062 * 269.99330 * 1 2 3 30 30 H 1.08999 * 109.47267 * 29.99686 * 1 2 3 31 31 H 1.09009 * 109.47184 * 150.00129 * 1 2 3 32 32 H 1.07997 * 126.42226 * 359.94798 * 3 2 1 33 33 H 1.08994 * 109.75905 * 242.32533 * 10 9 7 34 34 H 1.08998 * 109.75631 * 3.03359 * 10 9 7 35 35 H 1.09006 * 109.24952 * 177.62998 * 11 10 9 36 36 H 1.08997 * 109.25417 * 297.09337 * 11 10 9 37 37 H 1.09000 * 110.78148 * 196.66503 * 14 12 11 38 38 H 1.09002 * 110.77989 * 319.91473 * 14 12 11 39 39 H 1.08998 * 109.90039 * 142.23311 * 15 14 12 40 40 H 1.09007 * 109.90123 * 263.29164 * 15 14 12 41 41 H 0.97000 * 120.00008 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.22643 * 352.86173 * 27 9 7 43 43 H 1.09000 * 109.22697 * 112.22148 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6658 0.0006 5 1 4.3789 1.2208 0.0011 6 6 3.5465 -0.7003 0.0003 7 6 4.7174 -1.5958 0.0062 8 8 5.8347 -1.1348 0.1402 9 7 4.5497 -2.9254 -0.1369 10 6 3.2310 -3.4986 -0.4499 11 6 3.3616 -4.3047 -1.7418 12 6 4.4330 -5.3882 -1.5941 13 1 4.1181 -6.1991 -0.9373 14 6 4.7701 -5.8738 -3.0380 15 6 5.6954 -4.7535 -3.5633 16 7 6.2777 -4.0833 -2.3864 17 6 7.1315 -3.0128 -2.4088 18 1 7.5010 -2.5974 -1.4829 19 6 7.5221 -2.4618 -3.6215 20 7 7.0722 -2.9685 -4.7499 21 14 8.6861 -1.0012 -3.6520 22 1 9.9664 -1.3748 -2.9988 23 1 8.9462 -0.6048 -5.0594 24 1 8.0718 0.1369 -2.9222 25 6 5.7820 -4.7658 -1.1890 26 1 6.4727 -5.5718 -0.9411 27 6 5.6767 -3.8542 0.0078 28 7 2.2860 -1.0792 0.0002 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8901 -0.5139 32 1 1.9711 2.1277 -0.0008 33 1 2.9113 -4.1522 0.3616 34 1 2.5041 -2.6978 -0.5862 35 1 2.4048 -4.7740 -1.9708 36 1 3.6379 -3.6355 -2.5566 37 1 5.2950 -6.8287 -3.0122 38 1 3.8658 -5.9476 -3.6422 39 1 6.4880 -5.1836 -4.1755 40 1 5.1177 -4.0406 -4.1517 41 1 7.3454 -2.5837 -5.5974 42 1 6.6009 -3.2847 0.1059 43 1 5.5313 -4.4583 0.9034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042263525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:25 Heat of formation + Delta-G solvation = 43.785422 kcal Electronic energy + Delta-G solvation = -26546.100707 eV Core-core repulsion = 23013.484124 eV Total energy + Delta-G solvation = -3532.616583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32882 -41.18743 -39.46348 -36.64396 -34.72139 -34.17996 -33.00292 -32.30902 -30.64910 -30.04153 -28.01153 -26.51217 -25.87658 -23.91029 -23.75053 -21.75253 -21.58630 -21.17810 -20.05653 -18.89381 -18.45760 -17.60064 -16.99957 -16.83018 -16.56708 -16.04840 -15.75792 -15.41081 -15.21912 -15.00859 -14.64105 -14.30275 -14.20044 -13.85950 -13.74760 -13.50901 -13.23778 -13.14942 -12.99508 -12.91476 -12.65680 -12.59217 -12.33840 -12.09282 -11.68416 -11.53816 -11.34495 -11.32999 -11.20672 -11.18956 -10.67662 -10.33346 -9.66223 -9.28459 -8.80493 -7.83108 -5.13367 0.35213 1.34182 1.37280 1.44377 1.52503 1.63423 2.34579 2.47147 2.50024 3.16217 3.35004 3.55831 3.85657 3.90179 4.02865 4.12524 4.14839 4.35201 4.38039 4.47568 4.54420 4.64268 4.70649 4.74180 4.85402 4.90601 5.00285 5.02274 5.03891 5.08627 5.15052 5.17525 5.28430 5.32009 5.53801 5.61574 5.65970 5.72605 5.81591 5.91187 6.16271 6.23386 6.41312 6.77041 7.12871 7.15279 7.83351 8.47196 9.27746 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.006374 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.610316 B = 4391.732111 C = 5547.611260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.027 4.027 3 C -0.006 4.006 4 N -0.522 5.522 5 H 0.435 0.565 6 C 0.123 3.877 7 C 0.592 3.408 8 O -0.583 6.583 9 N -0.570 5.570 10 C 0.078 3.922 11 C -0.114 4.114 12 C -0.086 4.086 13 H 0.124 0.876 14 C -0.130 4.130 15 C 0.187 3.813 16 N -0.605 5.605 17 C -0.201 4.201 18 H 0.070 0.930 19 C -0.069 4.069 20 N -0.952 5.952 21 Si 0.959 3.041 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.142 3.858 26 H 0.034 0.966 27 C 0.115 3.885 28 N -0.444 5.444 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.000 1.000 40 H 0.003 0.997 41 H 0.242 0.758 42 H 0.059 0.941 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 2.427 11.603 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.161 4.161 3 C -0.145 4.145 4 N -0.123 5.123 5 H 0.275 0.725 6 C -0.137 4.137 7 C 0.379 3.621 8 O -0.463 6.463 9 N -0.300 5.300 10 C -0.043 4.043 11 C -0.152 4.152 12 C -0.105 4.105 13 H 0.142 0.858 14 C -0.168 4.168 15 C 0.062 3.938 16 N -0.330 5.330 17 C -0.331 4.331 18 H 0.088 0.912 19 C -0.261 4.261 20 N -0.603 5.603 21 Si 0.789 3.211 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.035 3.965 26 H 0.051 0.949 27 C -0.008 4.008 28 N -0.168 5.168 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.114 0.886 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.018 0.982 40 H 0.021 0.979 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.072 1.931 11.528 19.873 hybrid contribution 2.119 2.004 -0.761 3.015 sum -13.952 3.936 10.767 18.058 Atomic orbital electron populations 1.20152 0.84388 1.03934 1.03446 1.21755 0.98754 0.87887 1.07692 1.23517 0.81514 1.02779 1.06697 1.43028 1.10525 1.06837 1.51933 0.72534 1.22320 0.93371 0.83185 1.14774 1.16879 0.85631 0.82469 0.77162 1.90781 1.25809 1.76072 1.53637 1.47578 1.11464 1.04124 1.66790 1.22850 0.83911 1.00677 0.96870 1.21768 0.99197 0.97046 0.97232 1.22454 0.93666 0.97736 0.96657 0.85819 1.23032 0.99279 0.97676 0.96782 1.20943 0.92974 0.91439 0.88453 1.44493 1.52557 1.34396 1.01603 1.19117 1.17251 1.04585 0.92173 0.91201 1.25363 1.03091 1.02172 0.95467 1.70158 1.49774 1.43977 0.96397 0.85429 0.79544 0.80296 0.75841 1.20549 1.21670 1.21947 1.20925 0.95008 0.93149 0.87372 0.94858 1.21349 0.89417 0.91608 0.98432 1.69734 0.99013 1.30931 1.17168 0.89967 0.88752 0.91430 0.75247 0.89166 0.84511 0.88567 0.95547 0.91086 0.90229 0.98200 0.97867 0.94910 0.92292 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.03 -0.61 7.07 41.75 0.30 -0.32 16 3 C -0.01 -0.11 11.91 83.52 0.99 0.88 16 4 N -0.52 -14.02 6.15 -188.03 -1.16 -15.17 16 5 H 0.43 10.63 8.96 -92.71 -0.83 9.80 16 6 C 0.12 4.21 7.69 136.28 1.05 5.26 16 7 C 0.59 24.64 7.70 86.66 0.67 25.31 16 8 O -0.58 -28.29 16.56 -4.07 -0.07 -28.36 16 9 N -0.57 -21.60 2.97 -827.85 -2.46 -24.06 16 10 C 0.08 2.40 6.18 86.20 0.53 2.93 16 11 C -0.11 -3.67 5.04 30.57 0.15 -3.51 16 12 C -0.09 -2.73 3.68 -9.38 -0.03 -2.77 16 13 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 14 C -0.13 -4.65 6.32 32.15 0.20 -4.44 16 15 C 0.19 9.50 4.61 86.71 0.40 9.90 16 16 N -0.61 -31.72 3.19 -674.92 -2.16 -33.88 16 17 C -0.20 -12.00 9.69 84.03 0.81 -11.19 16 18 H 0.07 4.27 6.49 -2.91 -0.02 4.25 16 19 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 20 N -0.95 -60.65 10.38 21.65 0.22 -60.42 16 21 Si 0.96 50.75 29.55 68.60 2.03 52.78 16 22 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 24 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 25 C 0.14 5.74 2.96 44.62 0.13 5.88 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 C 0.12 4.41 5.66 85.62 0.48 4.90 16 28 N -0.44 -13.26 7.68 -177.64 -1.36 -14.62 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.14 4.33 4.11 -22.13 -0.09 4.24 16 35 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.03 1.11 6.85 -2.39 -0.02 1.09 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.54 7.98 -2.39 -0.02 2.52 16 39 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 40 H 0.00 0.18 7.05 -2.38 -0.02 0.16 16 41 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.06 2.70 5.49 -2.39 -0.01 2.69 16 43 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -81.96 336.39 2.07 -79.88 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.13 Total: 14.90 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 6.90 Total: 28.96 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -6.91 Total: -148.16 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.07 Total: -28.36 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.78 kcal Total: -81.96 2.07 -79.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042263525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.668 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds