Wall clock time and date at job start Fri Apr 10 2020 17:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35558 * 125.82302 * 2 1 4 4 N 1.35405 * 107.15927 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.44303 * 179.97438 * 4 3 2 6 6 C 1.36673 * 107.12184 * 0.02562 * 4 3 2 7 7 C 1.47410 * 125.86575 * 179.97438 * 6 4 3 8 8 O 1.21611 * 119.99862 * 6.97834 * 7 6 4 9 9 N 1.34774 * 120.00075 * 186.97672 * 7 6 4 10 10 C 1.46594 * 119.75249 * 176.81034 * 9 7 6 11 11 C 1.53890 * 110.71437 * 227.74463 * 10 9 7 12 12 C 1.51972 * 107.29325 * 308.19642 * 11 10 9 13 13 H 1.09005 * 111.57096 * 303.13985 * 12 11 10 14 14 C 1.53702 * 115.00065 * 175.43079 * 12 11 10 15 15 C 1.55303 * 101.81587 * 206.54061 * 14 12 11 16 16 N 1.48150 * 107.04204 * 22.44368 * 15 14 12 17 17 C 1.36943 * 126.39886 * 184.98113 * 16 15 14 18 18 H 1.07994 * 119.99855 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99684 * 0.02562 * 17 16 15 20 20 N 1.31625 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 89.99853 * 21 19 17 23 23 H 1.48502 * 109.47112 * 209.99848 * 21 19 17 24 24 H 1.48501 * 109.47313 * 329.99761 * 21 19 17 25 25 C 1.45512 * 107.20682 * 5.00098 * 16 15 14 26 26 H 1.09000 * 109.56742 * 86.62182 * 25 16 15 27 27 C 1.47800 * 119.75308 * 356.81782 * 9 7 6 28 28 N 1.31616 * 108.26857 * 0.26418 * 6 4 3 29 29 H 1.09008 * 109.47452 * 89.99618 * 1 2 3 30 30 H 1.09002 * 109.47540 * 209.99620 * 1 2 3 31 31 H 1.08997 * 109.47442 * 329.99464 * 1 2 3 32 32 H 1.07999 * 126.42595 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.22228 * 107.43089 * 10 9 7 34 34 H 1.08997 * 109.23064 * 348.06767 * 10 9 7 35 35 H 1.08994 * 109.89088 * 188.74625 * 11 10 9 36 36 H 1.09002 * 109.88763 * 67.64129 * 11 10 9 37 37 H 1.08999 * 110.96211 * 88.41039 * 14 12 11 38 38 H 1.08998 * 110.98876 * 324.69011 * 14 12 11 39 39 H 1.08995 * 109.91990 * 263.09653 * 15 14 12 40 40 H 1.08999 * 110.08262 * 141.88367 * 15 14 12 41 41 H 0.97002 * 119.99648 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.06360 * 9.52136 * 27 9 7 43 43 H 1.09003 * 110.06090 * 247.95609 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6658 -0.0006 5 1 4.3788 1.2207 -0.0011 6 6 3.5464 -0.7004 -0.0015 7 6 4.7174 -1.5959 -0.0029 8 8 5.8355 -1.1350 0.1246 9 7 4.5488 -2.9254 -0.1455 10 6 5.7203 -3.8038 -0.2165 11 6 5.5928 -4.7871 -1.3934 12 6 4.2397 -5.4677 -1.2689 13 1 4.1285 -5.9650 -0.3053 14 6 3.8799 -6.4144 -2.4252 15 6 2.3277 -6.3754 -2.3968 16 7 1.9372 -5.1161 -1.7210 17 6 0.6642 -4.7278 -1.3985 18 1 0.4970 -3.7824 -0.9041 19 6 -0.4111 -5.5495 -1.7071 20 7 -0.2073 -6.7016 -2.3101 21 14 -2.1476 -5.0196 -1.2678 22 1 -2.7309 -4.2505 -2.3963 23 1 -2.9802 -6.2208 -1.0048 24 1 -2.1124 -4.1661 -0.0530 25 6 3.1590 -4.3686 -1.4644 26 1 3.4074 -3.7644 -2.3369 27 6 3.1842 -3.4869 -0.2292 28 7 2.2860 -1.0792 -0.0073 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9711 2.1277 0.0004 33 1 5.8042 -4.3661 0.7136 34 1 6.6160 -3.1974 -0.3507 35 1 6.3881 -5.5307 -1.3432 36 1 5.6498 -4.2450 -2.3374 37 1 4.2482 -7.4221 -2.2331 38 1 4.2623 -6.0358 -3.3731 39 1 1.9449 -7.2301 -1.8392 40 1 1.9343 -6.3888 -3.4132 41 1 -0.9588 -7.2756 -2.5261 42 1 2.4546 -2.6832 -0.3285 43 1 2.9692 -4.0812 0.6589 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042263527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:30 Heat of formation + Delta-G solvation = 69.819264 kcal Electronic energy + Delta-G solvation = -26172.434336 eV Core-core repulsion = 22640.946666 eV Total energy + Delta-G solvation = -3531.487670 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34161 -39.84759 -38.13286 -35.24653 -33.42485 -32.92563 -31.70747 -30.73867 -29.20878 -28.36527 -27.06394 -24.86761 -24.03069 -22.90062 -21.74414 -20.50843 -20.11577 -19.74875 -19.31414 -17.76480 -16.67778 -16.31057 -15.74660 -15.52771 -14.74525 -14.63229 -14.26386 -14.11830 -13.90679 -13.60524 -13.35366 -13.18586 -12.83540 -12.69243 -12.52017 -12.13157 -12.01761 -11.80559 -11.50773 -11.20558 -10.81468 -10.78399 -10.66782 -10.39610 -10.21814 -10.13589 -9.99557 -9.81654 -9.69395 -9.50216 -8.72684 -8.59632 -8.52797 -8.26810 -6.75471 -5.62455 -2.95076 1.36940 2.53961 2.59447 3.44292 3.46029 3.47322 3.51155 3.52987 4.20542 4.58544 4.77015 5.02249 5.09892 5.18308 5.21059 5.26361 5.52190 5.68409 5.70937 5.76029 5.80436 5.85838 5.88638 5.91986 6.04243 6.06361 6.15315 6.22413 6.27828 6.28919 6.46540 6.55778 6.65209 6.73562 6.76888 7.01994 7.16982 7.32030 7.50280 7.65384 7.70048 7.85329 7.91468 8.22605 8.33011 9.29300 9.92261 10.59638 11.50419 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.006922 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.813835 B = 4044.289458 C = 6348.925300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.004 3.996 3 C -0.031 4.031 4 N -0.526 5.526 5 H 0.428 0.572 6 C 0.156 3.844 7 C 0.601 3.399 8 O -0.560 6.560 9 N -0.574 5.574 10 C 0.113 3.887 11 C -0.117 4.117 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.590 5.590 17 C -0.218 4.218 18 H 0.084 0.916 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.279 1.279 25 C 0.160 3.840 26 H 0.019 0.981 27 C 0.056 3.944 28 N -0.422 5.422 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.185 0.815 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.250 0.750 42 H 0.165 0.835 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 11.968 4.126 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C -0.169 4.169 4 N -0.127 5.127 5 H 0.267 0.733 6 C -0.105 4.105 7 C 0.387 3.613 8 O -0.440 6.440 9 N -0.305 5.305 10 C -0.009 4.009 11 C -0.156 4.156 12 C -0.136 4.136 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.315 5.315 17 C -0.346 4.346 18 H 0.102 0.898 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.051 3.949 26 H 0.037 0.963 27 C -0.065 4.065 28 N -0.145 5.145 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.202 0.798 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.180 0.820 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.202 11.248 4.172 14.533 hybrid contribution -0.354 1.164 0.118 1.223 sum 7.848 12.413 4.290 15.300 Atomic orbital electron populations 1.20121 0.86946 1.03039 1.02966 1.21119 0.97262 0.88066 1.06413 1.22659 0.82932 1.00868 1.10421 1.42825 1.09073 1.07375 1.53467 0.73287 1.22686 0.93822 0.82150 1.11808 1.16579 0.85289 0.82002 0.77469 1.90778 1.24213 1.76011 1.52973 1.48005 1.09263 1.04672 1.68550 1.21653 0.87967 0.92378 0.98927 1.21786 0.98174 0.97632 0.97974 1.22311 0.94258 0.97559 0.99488 0.90495 1.22725 0.99946 0.98021 0.96937 1.21541 0.86855 0.89266 0.97094 1.44155 1.00441 1.18443 1.68439 1.19120 0.81210 1.02337 1.31930 0.89833 1.24774 0.97790 0.96856 1.01226 1.69951 1.29308 1.11369 1.46703 0.86173 0.84736 0.77225 0.78054 1.21784 1.21939 1.20480 1.20927 0.87820 0.91805 0.94304 0.96344 1.23396 0.81815 1.02417 0.98916 1.69808 0.99265 1.28878 1.16514 0.90810 0.90402 0.91319 0.79815 0.91566 0.89481 0.90817 0.91527 0.92361 0.92690 0.92695 0.94495 0.93951 0.81968 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.42 36.00 0.38 -0.49 16 2 C 0.00 0.06 7.07 -83.00 -0.59 -0.53 16 3 C -0.03 -0.33 11.91 -16.93 -0.20 -0.53 16 4 N -0.53 -6.24 6.15 -10.78 -0.07 -6.31 16 5 H 0.43 3.91 8.96 -40.82 -0.37 3.55 16 6 C 0.16 2.48 7.72 -154.51 -1.19 1.29 16 7 C 0.60 10.28 7.67 -12.53 -0.10 10.18 16 8 O -0.56 -10.02 16.45 5.27 0.09 -9.93 16 9 N -0.57 -9.82 3.01 -174.01 -0.52 -10.35 16 10 C 0.11 1.66 6.32 -3.53 -0.02 1.64 16 11 C -0.12 -1.71 5.72 -26.79 -0.15 -1.86 16 12 C -0.12 -2.09 2.61 -89.52 -0.23 -2.32 16 13 H 0.08 1.43 8.13 -51.93 -0.42 1.00 16 14 C -0.14 -2.61 6.54 -25.15 -0.16 -2.77 16 15 C 0.18 4.31 5.45 -1.91 -0.01 4.30 16 16 N -0.59 -14.95 3.35 -162.91 -0.55 -15.50 16 17 C -0.22 -5.97 9.88 -15.06 -0.15 -6.12 16 18 H 0.08 2.23 7.41 -52.49 -0.39 1.84 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.93 -27.19 10.43 55.49 0.58 -26.61 16 21 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.16 3.39 2.75 -67.82 -0.19 3.20 16 26 H 0.02 0.43 7.93 -51.93 -0.41 0.02 16 27 C 0.06 1.09 5.51 -3.95 -0.02 1.07 16 28 N -0.42 -7.17 7.44 -7.50 -0.06 -7.22 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.09 1.24 6.98 -51.93 -0.36 0.88 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.05 1.47 7.21 -51.93 -0.37 1.10 16 40 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.16 3.33 3.45 -83.71 -0.29 3.04 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -32.75 340.08 -9.54 -42.29 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.37 Total: 4.83 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -2.74 Total: 6.67 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.61 Total: -65.99 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.75 -9.54 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042263527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.107 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds