Wall clock time and date at job start Fri Apr 10 2020 17:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35558 * 125.82302 * 2 1 4 4 N 1.35405 * 107.15927 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.44303 * 179.97438 * 4 3 2 6 6 C 1.36673 * 107.12184 * 0.02562 * 4 3 2 7 7 C 1.47410 * 125.86575 * 179.97438 * 6 4 3 8 8 O 1.21611 * 119.99862 * 6.97834 * 7 6 4 9 9 N 1.34774 * 120.00075 * 186.97672 * 7 6 4 10 10 C 1.46594 * 119.75249 * 176.81034 * 9 7 6 11 11 C 1.53890 * 110.71437 * 227.74463 * 10 9 7 12 12 C 1.51972 * 107.29325 * 308.19642 * 11 10 9 13 13 H 1.09005 * 111.57096 * 303.13985 * 12 11 10 14 14 C 1.53702 * 115.00065 * 175.43079 * 12 11 10 15 15 C 1.55303 * 101.81587 * 206.54061 * 14 12 11 16 16 N 1.48150 * 107.04204 * 22.44368 * 15 14 12 17 17 C 1.36943 * 126.39886 * 184.98113 * 16 15 14 18 18 H 1.07994 * 119.99855 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99684 * 0.02562 * 17 16 15 20 20 N 1.31625 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 89.99853 * 21 19 17 23 23 H 1.48502 * 109.47112 * 209.99848 * 21 19 17 24 24 H 1.48501 * 109.47313 * 329.99761 * 21 19 17 25 25 C 1.45512 * 107.20682 * 5.00098 * 16 15 14 26 26 H 1.09000 * 109.56742 * 86.62182 * 25 16 15 27 27 C 1.47800 * 119.75308 * 356.81782 * 9 7 6 28 28 N 1.31616 * 108.26857 * 0.26418 * 6 4 3 29 29 H 1.09008 * 109.47452 * 89.99618 * 1 2 3 30 30 H 1.09002 * 109.47540 * 209.99620 * 1 2 3 31 31 H 1.08997 * 109.47442 * 329.99464 * 1 2 3 32 32 H 1.07999 * 126.42595 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.22228 * 107.43089 * 10 9 7 34 34 H 1.08997 * 109.23064 * 348.06767 * 10 9 7 35 35 H 1.08994 * 109.89088 * 188.74625 * 11 10 9 36 36 H 1.09002 * 109.88763 * 67.64129 * 11 10 9 37 37 H 1.08999 * 110.96211 * 88.41039 * 14 12 11 38 38 H 1.08998 * 110.98876 * 324.69011 * 14 12 11 39 39 H 1.08995 * 109.91990 * 263.09653 * 15 14 12 40 40 H 1.08999 * 110.08262 * 141.88367 * 15 14 12 41 41 H 0.97002 * 119.99648 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.06360 * 9.52136 * 27 9 7 43 43 H 1.09003 * 110.06090 * 247.95609 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5832 0.6658 -0.0006 5 1 4.3788 1.2207 -0.0011 6 6 3.5464 -0.7004 -0.0015 7 6 4.7174 -1.5959 -0.0029 8 8 5.8355 -1.1350 0.1246 9 7 4.5488 -2.9254 -0.1455 10 6 5.7203 -3.8038 -0.2165 11 6 5.5928 -4.7871 -1.3934 12 6 4.2397 -5.4677 -1.2689 13 1 4.1285 -5.9650 -0.3053 14 6 3.8799 -6.4144 -2.4252 15 6 2.3277 -6.3754 -2.3968 16 7 1.9372 -5.1161 -1.7210 17 6 0.6642 -4.7278 -1.3985 18 1 0.4970 -3.7824 -0.9041 19 6 -0.4111 -5.5495 -1.7071 20 7 -0.2073 -6.7016 -2.3101 21 14 -2.1476 -5.0196 -1.2678 22 1 -2.7309 -4.2505 -2.3963 23 1 -2.9802 -6.2208 -1.0048 24 1 -2.1124 -4.1661 -0.0530 25 6 3.1590 -4.3686 -1.4644 26 1 3.4074 -3.7644 -2.3369 27 6 3.1842 -3.4869 -0.2292 28 7 2.2860 -1.0792 -0.0073 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9711 2.1277 0.0004 33 1 5.8042 -4.3661 0.7136 34 1 6.6160 -3.1974 -0.3507 35 1 6.3881 -5.5307 -1.3432 36 1 5.6498 -4.2450 -2.3374 37 1 4.2482 -7.4221 -2.2331 38 1 4.2623 -6.0358 -3.3731 39 1 1.9449 -7.2301 -1.8392 40 1 1.9343 -6.3888 -3.4132 41 1 -0.9588 -7.2756 -2.5261 42 1 2.4546 -2.6832 -0.3285 43 1 2.9692 -4.0812 0.6589 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042263527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:29 Heat of formation + Delta-G solvation = 48.598362 kcal Electronic energy + Delta-G solvation = -26173.354544 eV Core-core repulsion = 22640.946666 eV Total energy + Delta-G solvation = -3532.407878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39024 -41.23419 -39.64091 -36.79207 -34.87602 -34.18621 -33.25921 -32.06239 -30.80277 -30.06534 -28.13275 -26.51547 -25.64338 -24.30283 -23.02562 -21.89177 -21.45703 -21.27036 -20.66453 -18.96810 -18.53333 -17.62835 -16.97549 -16.82955 -16.65076 -16.02556 -15.70901 -15.58256 -15.07001 -15.06072 -14.79064 -14.71461 -14.04955 -13.85622 -13.70255 -13.57412 -13.47839 -13.11023 -13.05130 -13.00088 -12.68178 -12.47772 -12.14001 -11.99711 -11.84334 -11.54924 -11.48511 -11.39824 -11.27476 -11.22238 -10.66286 -10.07601 -9.85551 -9.35765 -8.83551 -7.77457 -5.11875 0.26755 1.45492 1.49169 1.50855 1.53433 1.59968 2.25756 2.35222 2.57407 3.05092 3.41215 3.57794 3.71303 3.92786 3.97051 4.03544 4.09938 4.32094 4.35426 4.37884 4.43231 4.54237 4.65700 4.75942 4.80040 4.86305 4.91563 4.94266 4.96837 5.04273 5.10399 5.13944 5.18761 5.30721 5.45499 5.55036 5.60741 5.69699 5.82104 5.93389 6.13923 6.23631 6.28546 6.70378 7.01385 7.16017 7.84851 8.52468 9.34382 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.006922 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.813835 B = 4044.289458 C = 6348.925300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.034 4.034 3 C 0.014 3.986 4 N -0.510 5.510 5 H 0.442 0.558 6 C 0.117 3.883 7 C 0.600 3.400 8 O -0.572 6.572 9 N -0.579 5.579 10 C 0.109 3.891 11 C -0.105 4.105 12 C -0.103 4.103 13 H 0.073 0.927 14 C -0.122 4.122 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.955 5.955 21 Si 0.970 3.030 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.264 1.264 25 C 0.154 3.846 26 H 0.003 0.997 27 C 0.069 3.931 28 N -0.457 5.457 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.239 0.761 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.000 1.000 41 H 0.244 0.756 42 H 0.158 0.842 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 14.317 4.883 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.167 4.167 3 C -0.126 4.126 4 N -0.113 5.113 5 H 0.284 0.716 6 C -0.143 4.143 7 C 0.387 3.613 8 O -0.453 6.453 9 N -0.309 5.309 10 C -0.013 4.013 11 C -0.143 4.143 12 C -0.122 4.122 13 H 0.092 0.908 14 C -0.160 4.160 15 C 0.056 3.944 16 N -0.334 5.334 17 C -0.351 4.351 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.605 5.605 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.046 3.954 26 H 0.020 0.980 27 C -0.054 4.054 28 N -0.181 5.181 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.255 0.745 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.019 0.981 41 H 0.053 0.947 42 H 0.174 0.826 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.425 13.623 4.942 17.287 hybrid contribution -0.741 0.559 -0.125 0.937 sum 8.684 14.182 4.816 17.313 Atomic orbital electron populations 1.20161 0.86017 1.03673 1.02901 1.21602 0.98268 0.88468 1.08326 1.23433 0.81533 1.02207 1.05448 1.42862 1.10277 1.06188 1.51988 0.71644 1.22398 0.93151 0.83612 1.15105 1.16745 0.85667 0.82022 0.76873 1.90754 1.24696 1.76105 1.53698 1.47994 1.08776 1.05226 1.68913 1.21845 0.87365 0.92382 0.99671 1.21742 0.96802 0.97997 0.97781 1.22232 0.95212 0.95999 0.98796 0.90844 1.22599 0.95358 0.99970 0.98115 1.21348 0.90770 0.88011 0.94284 1.44416 1.01247 1.19220 1.68472 1.19409 0.82535 1.02197 1.30934 0.89792 1.25579 1.01552 0.97150 1.01873 1.70173 1.29772 1.12423 1.48173 0.85183 0.80001 0.76705 0.78247 1.21478 1.22441 1.18886 1.21032 0.87211 0.92815 0.94343 0.98000 1.23072 0.83458 1.01734 0.97108 1.69586 1.00305 1.31061 1.17113 0.91202 0.92916 0.87544 0.74500 0.90187 0.88535 0.87138 0.91825 0.89807 0.91394 0.95947 0.98149 0.94698 0.82627 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.42 71.24 0.74 -0.81 16 2 C -0.03 -0.89 7.07 41.75 0.30 -0.59 16 3 C 0.01 0.24 11.91 83.52 0.99 1.23 16 4 N -0.51 -10.85 6.15 -188.01 -1.16 -12.01 16 5 H 0.44 6.81 8.96 -92.71 -0.83 5.98 16 6 C 0.12 3.62 7.72 136.28 1.05 4.67 16 7 C 0.60 20.17 7.67 86.66 0.66 20.83 16 8 O -0.57 -19.76 16.45 -4.07 -0.07 -19.82 16 9 N -0.58 -19.53 3.01 -822.70 -2.48 -22.01 16 10 C 0.11 2.99 6.32 86.66 0.55 3.54 16 11 C -0.10 -2.79 5.72 30.56 0.17 -2.62 16 12 C -0.10 -3.59 2.61 -10.08 -0.03 -3.62 16 13 H 0.07 2.65 8.13 -2.38 -0.02 2.63 16 14 C -0.12 -4.54 6.54 31.62 0.21 -4.33 16 15 C 0.18 9.17 5.45 86.85 0.47 9.64 16 16 N -0.61 -32.01 3.35 -669.33 -2.24 -34.25 16 17 C -0.22 -12.60 9.88 84.03 0.83 -11.77 16 18 H 0.08 4.65 7.41 -2.91 -0.02 4.62 16 19 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 20 N -0.96 -58.62 10.43 21.65 0.23 -58.40 16 21 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.15 6.62 2.75 45.59 0.13 6.75 16 26 H 0.00 0.12 7.93 -2.39 -0.02 0.10 16 27 C 0.07 2.74 5.51 85.73 0.47 3.21 16 28 N -0.46 -15.51 7.44 -177.63 -1.32 -16.83 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.24 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.10 2.53 6.98 -2.39 -0.02 2.51 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.77 7.98 -2.39 -0.02 1.75 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 39 H 0.02 1.26 7.21 -2.39 -0.02 1.24 16 40 H 0.00 0.02 7.76 -2.39 -0.02 0.00 16 41 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.16 6.59 3.45 -65.13 -0.22 6.36 16 43 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.68 340.08 2.00 -73.68 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.02 Total: 18.54 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 7.02 Total: 22.58 kcal Atomic # 7 Polarization: -136.52 SS G_CDS: -6.97 Total: -143.49 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.82 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.68 2.00 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042263527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.280 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds