Wall clock time and date at job start Fri Apr 10 2020 17:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47016 * 274.80281 * 3 2 1 5 5 H 1.48503 * 109.46817 * 34.80067 * 3 2 1 6 6 H 1.48501 * 109.47216 * 154.79851 * 3 2 1 7 7 C 1.38816 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00154 * 188.11739 * 7 2 1 9 9 N 1.36934 * 119.99966 * 8.10941 * 7 2 1 10 10 C 1.48158 * 126.40046 * 7.59127 * 9 7 2 11 11 C 1.55296 * 107.04254 * 174.99476 * 10 9 7 12 12 C 1.53698 * 101.81881 * 337.55717 * 11 10 9 13 13 H 1.09009 * 111.10748 * 280.63093 * 12 11 10 14 14 C 1.51977 * 115.00290 * 153.45354 * 12 11 10 15 15 C 1.53879 * 107.29572 * 184.57123 * 14 12 11 16 16 N 1.46599 * 110.71454 * 51.80680 * 15 14 12 17 17 C 1.34778 * 119.75056 * 132.28011 * 16 15 14 18 18 O 1.21281 * 119.99665 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00453 * 0.02562 * 17 16 15 20 20 N 1.46500 * 109.47450 * 180.02562 * 19 17 16 21 21 C 1.36880 * 126.39368 * 269.71688 * 20 19 17 22 22 C 1.34673 * 106.81834 * 179.83984 * 21 20 19 23 23 N 1.34133 * 108.01695 * 0.42055 * 22 21 20 24 24 C 1.30500 * 109.25697 * 359.73053 * 23 22 21 25 25 C 1.47789 * 120.49176 * 312.26112 * 16 15 14 26 26 C 1.45507 * 126.39769 * 187.59017 * 9 7 2 27 27 H 1.09000 * 108.98610 * 93.64490 * 26 9 7 28 28 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.91857 * 55.64621 * 10 9 7 30 30 H 1.08998 * 109.91482 * 294.33871 * 10 9 7 31 31 H 1.08997 * 110.95885 * 219.41836 * 11 10 9 32 32 H 1.09005 * 110.96137 * 95.68445 * 11 10 9 33 33 H 1.09001 * 109.89175 * 304.01922 * 14 12 11 34 34 H 1.09000 * 109.88913 * 65.12226 * 14 12 11 35 35 H 1.09000 * 109.23369 * 172.13404 * 15 14 12 36 36 H 1.09009 * 109.22981 * 291.49612 * 15 14 12 37 37 H 1.09003 * 109.47263 * 300.00036 * 19 17 16 38 38 H 1.09001 * 109.47530 * 60.00027 * 19 17 16 39 39 H 1.07997 * 126.59356 * 359.97438 * 21 20 19 40 40 H 1.07996 * 125.99372 * 180.11697 * 22 21 20 41 41 H 1.07994 * 125.65175 * 179.97438 * 24 23 22 42 42 H 1.09002 * 110.06848 * 170.47652 * 25 16 15 43 43 H 1.09007 * 110.06173 * 291.92696 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3962 2.1050 -1.3951 5 1 1.5020 2.6212 0.7991 6 1 3.5948 1.4130 0.5962 7 6 2.0103 -1.2022 0.0005 8 1 3.0822 -1.2068 0.1326 9 7 1.3359 -2.3822 -0.1662 10 6 -0.0965 -2.5349 -0.5129 11 6 -0.3568 -4.0526 -0.7139 12 6 1.0542 -4.5753 -1.0267 13 1 1.3247 -4.3787 -2.0643 14 6 1.2936 -6.0326 -0.6678 15 6 2.7773 -6.3338 -0.9431 16 7 3.6378 -5.3467 -0.2842 17 6 4.6972 -5.7599 0.4393 18 8 5.4118 -4.9471 0.9868 19 6 4.9939 -7.2318 0.5681 20 7 6.1863 -7.4188 1.3984 21 6 7.4810 -7.4789 0.9583 22 6 8.2546 -7.6552 2.0465 23 7 7.4532 -7.7109 3.1207 24 6 6.2129 -7.5700 2.7400 25 6 3.3525 -3.9019 -0.4076 26 6 1.8921 -3.7204 -0.0361 27 1 1.7275 -4.0755 0.9812 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3150 -1.9953 -1.4343 30 1 -0.7174 -2.1559 0.2989 31 1 -1.0313 -4.2247 -1.5527 32 1 -0.7471 -4.5054 0.1976 33 1 1.0715 -6.1961 0.3867 34 1 0.6642 -6.6745 -1.2842 35 1 3.0177 -7.3280 -0.5666 36 1 2.9560 -6.3050 -2.0181 37 1 4.1455 -7.7341 1.0329 38 1 5.1693 -7.6550 -0.4209 39 1 7.8178 -7.3979 -0.0646 40 1 9.3311 -7.7420 2.0527 41 1 5.3507 -7.5741 3.3902 42 1 3.9854 -3.3359 0.2759 43 1 3.5228 -3.5734 -1.4330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042373105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:50 Heat of formation + Delta-G solvation = 71.350615 kcal Electronic energy + Delta-G solvation = -25389.458590 eV Core-core repulsion = 21858.037324 eV Total energy + Delta-G solvation = -3531.421266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.14563 -40.28042 -38.38497 -35.57441 -34.11426 -33.01240 -31.38908 -30.08083 -29.48184 -28.71053 -27.49678 -24.79885 -23.82491 -22.41032 -21.42116 -21.38880 -20.26257 -19.91683 -19.21912 -17.69353 -17.40293 -16.54728 -15.75505 -15.61553 -14.91628 -14.74545 -14.51576 -14.38321 -14.03691 -13.91827 -13.69997 -13.42962 -13.26479 -13.08825 -12.95297 -12.48852 -12.40003 -12.00260 -11.61486 -11.45803 -11.03197 -10.88883 -10.82928 -10.36570 -10.19312 -10.08974 -10.06239 -9.99518 -9.74499 -9.57951 -9.46951 -8.70085 -8.62261 -8.55277 -6.90069 -5.77756 -3.12635 1.89035 2.41755 2.50122 3.01220 3.17256 3.38515 3.44992 3.46770 4.17505 4.33974 4.45825 4.58395 4.66510 4.68019 4.76091 4.80824 4.99309 5.23829 5.31541 5.36101 5.50005 5.57080 5.60935 5.65032 5.76162 5.87702 5.94102 5.98488 6.04204 6.13170 6.25158 6.33212 6.43918 6.54842 6.62978 6.66195 6.93798 7.02914 7.31159 7.41128 7.58288 7.74030 8.00921 8.03404 8.17437 9.12354 9.76237 10.42497 11.34481 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.003863 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.885907 B = 7247.360443 C = 8471.411581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.175 3.825 11 C -0.137 4.137 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.120 4.120 15 C 0.106 3.894 16 N -0.602 5.602 17 C 0.491 3.509 18 O -0.520 6.520 19 C 0.087 3.913 20 N -0.445 5.445 21 C -0.047 4.047 22 C -0.031 4.031 23 N -0.496 5.496 24 C 0.194 3.806 25 C 0.117 3.883 26 C 0.157 3.843 27 H 0.024 0.976 28 H 0.253 0.747 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.202 0.798 42 H 0.093 0.907 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -19.184 -3.933 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.050 3.950 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.018 4.018 16 N -0.336 5.336 17 C 0.276 3.724 18 O -0.395 6.395 19 C -0.040 4.040 20 N -0.128 5.128 21 C -0.180 4.180 22 C -0.178 4.178 23 N -0.214 5.214 24 C -0.088 4.088 25 C -0.005 4.005 26 C 0.048 3.952 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.219 0.781 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.240 -18.565 -2.888 19.506 hybrid contribution -0.039 1.126 -1.005 1.510 sum 5.202 -17.439 -3.894 18.610 Atomic orbital electron populations 1.69948 1.04965 1.25212 1.56305 1.24793 0.95615 0.97755 1.01868 0.86144 0.78885 0.83550 0.77525 1.21585 1.21679 1.20451 1.19029 0.91000 0.82550 1.43535 0.90347 1.44160 1.06426 0.99154 1.81868 1.21539 0.85029 0.88650 0.99732 1.22711 0.95161 0.99519 1.00117 1.22267 0.97752 0.93292 0.99989 0.90429 1.21812 0.94210 0.97640 1.02220 1.21799 0.91385 0.90825 0.97742 1.48297 1.26793 1.08322 1.50202 1.20654 0.81596 0.90577 0.79605 1.90806 1.48071 1.54848 1.45817 1.21780 0.88340 0.95839 0.98000 1.45042 1.06340 1.53302 1.08130 1.22656 0.83118 1.11087 1.01101 1.22236 0.99622 1.07868 0.88078 1.70282 1.00366 1.20205 1.30542 1.24952 0.97686 1.04429 0.81769 1.21767 0.98613 0.77743 1.02390 1.20960 0.90791 0.87845 0.95613 0.95851 0.93702 0.94495 0.92707 0.92203 0.92356 0.91246 0.90604 0.90597 0.91209 0.85921 0.86221 0.81158 0.81454 0.78126 0.88905 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.66 55.49 0.59 -25.98 16 2 C 0.00 -0.09 5.45 -17.43 -0.09 -0.19 16 3 Si 0.91 22.15 29.56 -169.99 -5.03 17.12 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.36 9.88 -15.06 -0.15 -6.51 16 8 H 0.08 2.11 7.37 -52.48 -0.39 1.72 16 9 N -0.59 -14.44 3.35 -162.91 -0.55 -14.98 16 10 C 0.17 4.03 5.46 -1.91 -0.01 4.02 16 11 C -0.14 -2.31 6.54 -25.15 -0.16 -2.47 16 12 C -0.11 -1.72 2.61 -89.51 -0.23 -1.96 16 13 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 14 C -0.12 -1.26 5.72 -26.79 -0.15 -1.41 16 15 C 0.11 0.94 6.22 -3.53 -0.02 0.92 16 16 N -0.60 -7.90 3.01 -172.74 -0.52 -8.42 16 17 C 0.49 6.63 7.74 -10.99 -0.09 6.54 16 18 O -0.52 -9.79 15.80 5.56 0.09 -9.70 16 19 C 0.09 0.74 4.96 -5.20 -0.03 0.71 16 20 N -0.45 -5.00 2.24 -119.87 -0.27 -5.27 16 21 C -0.05 -0.53 11.58 -16.56 -0.19 -0.72 16 22 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 23 N -0.50 -7.19 11.25 -14.67 -0.17 -7.36 16 24 C 0.19 2.41 12.56 -90.37 -1.14 1.27 16 25 C 0.12 2.06 5.65 -3.95 -0.02 2.04 16 26 C 0.16 3.03 2.75 -67.82 -0.19 2.85 16 27 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 33 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.40 5.85 -51.93 -0.30 0.10 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.12 0.67 7.55 -51.93 -0.39 0.28 16 38 H 0.12 0.65 8.00 -51.93 -0.42 0.23 16 39 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.09 1.93 6.77 -51.93 -0.35 1.58 16 43 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -35.48 344.08 -9.75 -45.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.40 Total: -0.30 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.69 Total: 4.49 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.91 Total: -62.02 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.48 -9.75 -45.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042373105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.571 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds