Wall clock time and date at job start Fri Apr 10 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47016 * 274.80281 * 3 2 1 5 5 H 1.48503 * 109.46817 * 34.80067 * 3 2 1 6 6 H 1.48501 * 109.47216 * 154.79851 * 3 2 1 7 7 C 1.38816 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00154 * 188.11739 * 7 2 1 9 9 N 1.36934 * 119.99966 * 8.10941 * 7 2 1 10 10 C 1.48158 * 126.40046 * 7.59127 * 9 7 2 11 11 C 1.55296 * 107.04254 * 174.99476 * 10 9 7 12 12 C 1.53698 * 101.81881 * 337.55717 * 11 10 9 13 13 H 1.09009 * 111.10748 * 280.63093 * 12 11 10 14 14 C 1.51977 * 115.00290 * 153.45354 * 12 11 10 15 15 C 1.53879 * 107.29572 * 184.57123 * 14 12 11 16 16 N 1.46599 * 110.71454 * 51.80680 * 15 14 12 17 17 C 1.34778 * 119.75056 * 132.28011 * 16 15 14 18 18 O 1.21281 * 119.99665 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00453 * 0.02562 * 17 16 15 20 20 N 1.46500 * 109.47450 * 180.02562 * 19 17 16 21 21 C 1.36880 * 126.39368 * 269.71688 * 20 19 17 22 22 C 1.34673 * 106.81834 * 179.83984 * 21 20 19 23 23 N 1.34133 * 108.01695 * 0.42055 * 22 21 20 24 24 C 1.30500 * 109.25697 * 359.73053 * 23 22 21 25 25 C 1.47789 * 120.49176 * 312.26112 * 16 15 14 26 26 C 1.45507 * 126.39769 * 187.59017 * 9 7 2 27 27 H 1.09000 * 108.98610 * 93.64490 * 26 9 7 28 28 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.91857 * 55.64621 * 10 9 7 30 30 H 1.08998 * 109.91482 * 294.33871 * 10 9 7 31 31 H 1.08997 * 110.95885 * 219.41836 * 11 10 9 32 32 H 1.09005 * 110.96137 * 95.68445 * 11 10 9 33 33 H 1.09001 * 109.89175 * 304.01922 * 14 12 11 34 34 H 1.09000 * 109.88913 * 65.12226 * 14 12 11 35 35 H 1.09000 * 109.23369 * 172.13404 * 15 14 12 36 36 H 1.09009 * 109.22981 * 291.49612 * 15 14 12 37 37 H 1.09003 * 109.47263 * 300.00036 * 19 17 16 38 38 H 1.09001 * 109.47530 * 60.00027 * 19 17 16 39 39 H 1.07997 * 126.59356 * 359.97438 * 21 20 19 40 40 H 1.07996 * 125.99372 * 180.11697 * 22 21 20 41 41 H 1.07994 * 125.65175 * 179.97438 * 24 23 22 42 42 H 1.09002 * 110.06848 * 170.47652 * 25 16 15 43 43 H 1.09007 * 110.06173 * 291.92696 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3962 2.1050 -1.3951 5 1 1.5020 2.6212 0.7991 6 1 3.5948 1.4130 0.5962 7 6 2.0103 -1.2022 0.0005 8 1 3.0822 -1.2068 0.1326 9 7 1.3359 -2.3822 -0.1662 10 6 -0.0965 -2.5349 -0.5129 11 6 -0.3568 -4.0526 -0.7139 12 6 1.0542 -4.5753 -1.0267 13 1 1.3247 -4.3787 -2.0643 14 6 1.2936 -6.0326 -0.6678 15 6 2.7773 -6.3338 -0.9431 16 7 3.6378 -5.3467 -0.2842 17 6 4.6972 -5.7599 0.4393 18 8 5.4118 -4.9471 0.9868 19 6 4.9939 -7.2318 0.5681 20 7 6.1863 -7.4188 1.3984 21 6 7.4810 -7.4789 0.9583 22 6 8.2546 -7.6552 2.0465 23 7 7.4532 -7.7109 3.1207 24 6 6.2129 -7.5700 2.7400 25 6 3.3525 -3.9019 -0.4076 26 6 1.8921 -3.7204 -0.0361 27 1 1.7275 -4.0755 0.9812 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3150 -1.9953 -1.4343 30 1 -0.7174 -2.1559 0.2989 31 1 -1.0313 -4.2247 -1.5527 32 1 -0.7471 -4.5054 0.1976 33 1 1.0715 -6.1961 0.3867 34 1 0.6642 -6.6745 -1.2842 35 1 3.0177 -7.3280 -0.5666 36 1 2.9560 -6.3050 -2.0181 37 1 4.1455 -7.7341 1.0329 38 1 5.1693 -7.6550 -0.4209 39 1 7.8178 -7.3979 -0.0646 40 1 9.3311 -7.7420 2.0527 41 1 5.3507 -7.5741 3.3902 42 1 3.9854 -3.3359 0.2759 43 1 3.5228 -3.5734 -1.4330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042373105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:48 Heat of formation + Delta-G solvation = 48.126525 kcal Electronic energy + Delta-G solvation = -25390.465662 eV Core-core repulsion = 21858.037324 eV Total energy + Delta-G solvation = -3532.428338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.99187 -41.42574 -39.72016 -36.91424 -34.99842 -34.68506 -32.89998 -31.39114 -30.39646 -30.21712 -28.48468 -26.56058 -25.18827 -23.55279 -22.33602 -22.26020 -21.83628 -21.28048 -20.28718 -18.78736 -18.52658 -18.08269 -17.00289 -16.68034 -16.57460 -15.94677 -15.73806 -15.57696 -15.28555 -14.98231 -14.81876 -14.66157 -14.33463 -14.07588 -14.01294 -13.86287 -13.55483 -13.30507 -13.17420 -12.99104 -12.79147 -12.54130 -12.12300 -12.02316 -11.76407 -11.56740 -11.47044 -11.29174 -11.04070 -10.96805 -10.75379 -10.44714 -9.74918 -9.40922 -8.92299 -7.91388 -5.26713 1.01469 1.40511 1.40951 1.44431 1.50451 1.71099 2.08328 2.26438 2.45693 3.26526 3.33475 3.50082 3.79608 3.81919 3.88864 3.95982 3.97462 4.03234 4.12238 4.27105 4.29405 4.31028 4.57770 4.59089 4.60690 4.73930 4.78368 4.83007 4.89246 4.92530 5.13029 5.18265 5.22736 5.29882 5.33714 5.50357 5.56588 5.68574 5.73373 5.83789 6.15697 6.18155 6.37591 7.02785 7.03748 7.14937 7.73077 8.39986 9.19411 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.003863 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.885907 B = 7247.360443 C = 8471.411581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.176 3.824 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.078 0.922 14 C -0.113 4.113 15 C 0.098 3.902 16 N -0.598 5.598 17 C 0.486 3.514 18 O -0.586 6.586 19 C 0.095 3.905 20 N -0.447 5.447 21 C -0.044 4.044 22 C -0.061 4.061 23 N -0.539 5.539 24 C 0.181 3.819 25 C 0.130 3.870 26 C 0.147 3.853 27 H 0.006 0.994 28 H 0.248 0.752 29 H 0.004 0.996 30 H 0.013 0.987 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.200 0.800 40 H 0.180 0.820 41 H 0.223 0.777 42 H 0.048 0.952 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -22.923 -5.712 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.052 3.948 11 C -0.159 4.159 12 C -0.116 4.116 13 H 0.097 0.903 14 C -0.151 4.151 15 C -0.023 4.023 16 N -0.331 5.331 17 C 0.274 3.726 18 O -0.466 6.466 19 C -0.030 4.030 20 N -0.130 5.130 21 C -0.176 4.176 22 C -0.207 4.207 23 N -0.257 5.257 24 C -0.102 4.102 25 C 0.006 3.994 26 C 0.040 3.960 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.109 0.891 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.198 0.802 41 H 0.239 0.761 42 H 0.067 0.933 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.138 -22.377 -4.696 23.435 hybrid contribution -0.001 2.306 -0.425 2.345 sum 5.137 -20.071 -5.121 21.341 Atomic orbital electron populations 1.70145 1.06109 1.25330 1.57793 1.25545 0.96463 1.00724 1.02594 0.85207 0.77710 0.79846 0.77512 1.20990 1.21846 1.20069 1.19276 0.91058 0.84224 1.42315 0.91009 1.44453 1.07383 1.00465 1.81622 1.21371 0.83943 0.93040 0.96457 1.22585 0.97095 0.94385 1.01860 1.22217 0.94780 0.95969 0.98585 0.90339 1.21842 0.96177 0.94047 1.03048 1.22250 0.89340 0.91678 0.98996 1.48342 1.27614 1.06745 1.50373 1.21645 0.80425 0.92580 0.77952 1.90791 1.50285 1.57147 1.48376 1.22116 0.88747 0.91648 1.00451 1.45217 1.07166 1.52600 1.08008 1.23143 0.83109 1.09380 1.02010 1.22649 1.00625 1.09013 0.88405 1.70223 1.01754 1.21692 1.32077 1.25412 0.97804 1.04099 0.82844 1.21241 0.96452 0.81104 1.00645 1.21147 0.92769 0.86108 0.96018 0.97696 0.94304 0.97770 0.96906 0.89454 0.91147 0.91301 0.86490 0.85246 0.89104 0.81770 0.81676 0.78321 0.80241 0.76095 0.93317 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.44 10.66 21.65 0.23 -57.21 16 2 C -0.06 -3.46 5.45 84.86 0.46 -3.00 16 3 Si 0.97 47.25 29.56 68.60 2.03 49.28 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.71 9.88 84.03 0.83 -12.88 16 8 H 0.07 4.09 7.37 -2.91 -0.02 4.07 16 9 N -0.61 -31.25 3.35 -669.31 -2.24 -33.49 16 10 C 0.18 8.45 5.46 86.85 0.47 8.92 16 11 C -0.12 -3.88 6.54 31.62 0.21 -3.68 16 12 C -0.10 -2.66 2.61 -10.08 -0.03 -2.68 16 13 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 14 C -0.11 -1.73 5.72 30.55 0.17 -1.56 16 15 C 0.10 1.14 6.22 86.66 0.54 1.68 16 16 N -0.60 -13.98 3.01 -818.82 -2.46 -16.45 16 17 C 0.49 11.86 7.74 87.66 0.68 12.54 16 18 O -0.59 -22.15 15.80 -3.03 -0.05 -22.19 16 19 C 0.10 1.11 4.96 85.63 0.42 1.53 16 20 N -0.45 -8.67 2.24 -533.15 -1.19 -9.87 16 21 C -0.04 -0.87 11.58 83.09 0.96 0.09 16 22 C -0.06 -1.47 11.87 83.52 0.99 -0.48 16 23 N -0.54 -15.39 11.25 -200.31 -2.25 -17.65 16 24 C 0.18 4.20 12.56 180.26 2.26 6.47 16 25 C 0.13 4.62 5.65 85.73 0.48 5.10 16 26 C 0.15 5.72 2.75 45.60 0.13 5.85 16 27 H 0.01 0.24 7.94 -2.39 -0.02 0.22 16 28 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.00 0.21 7.86 -2.39 -0.02 0.19 16 30 H 0.01 0.70 7.25 -2.39 -0.02 0.69 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 33 H 0.07 1.14 7.99 -2.39 -0.02 1.12 16 34 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.13 0.24 5.85 -2.39 -0.01 0.22 16 36 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.16 0.62 7.55 -2.39 -0.02 0.61 16 38 H 0.17 0.52 8.00 -2.39 -0.02 0.50 16 39 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.18 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.22 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.05 2.15 6.77 -2.39 -0.02 2.13 16 43 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -87.83 344.08 3.65 -84.18 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.00 Total: 5.49 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 8.59 Total: 17.90 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -7.92 Total: -134.66 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -87.83 3.65 -84.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042373105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.304 kcal (2) G-P(sol) polarization free energy of solvation -87.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds