Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33319 * 126.10970 * 2 1 4 4 C 1.30862 * 109.68615 * 180.27636 * 3 2 1 5 5 N 1.34502 * 109.16213 * 359.76140 * 4 3 2 6 6 H 0.96995 * 126.47459 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10400 * 179.87754 * 2 1 3 8 8 C 1.46763 * 126.84330 * 359.97438 * 7 2 1 9 9 O 1.21675 * 120.00212 * 327.54592 * 8 7 2 10 10 N 1.34785 * 119.99637 * 147.54901 * 8 7 2 11 11 C 1.47156 * 121.22157 * 187.65849 * 10 8 7 12 12 C 1.52834 * 107.97968 * 122.71649 * 11 10 8 13 13 C 1.53093 * 110.57940 * 57.34709 * 12 11 10 14 14 H 1.08996 * 112.49138 * 70.57468 * 13 12 11 15 15 C 1.56490 * 106.41748 * 195.41546 * 13 12 11 16 16 C 1.54499 * 102.40412 * 78.36210 * 15 13 12 17 17 N 1.47435 * 107.29868 * 22.91056 * 16 15 13 18 18 C 1.36935 * 126.06423 * 181.51843 * 17 16 15 19 19 H 1.08002 * 120.00416 * 190.97719 * 18 17 16 20 20 C 1.38811 * 119.99711 * 10.96763 * 18 17 16 21 21 N 1.31625 * 120.00096 * 352.25781 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 172.25639 * 20 18 17 23 23 H 1.48493 * 109.47135 * 94.31592 * 22 20 18 24 24 H 1.48508 * 109.46953 * 214.31839 * 22 20 18 25 25 H 1.48501 * 109.47110 * 334.31362 * 22 20 18 26 26 C 1.46479 * 107.88115 * 1.51481 * 17 16 15 27 27 H 1.09005 * 108.42118 * 89.26293 * 26 17 16 28 28 C 1.46755 * 121.22342 * 7.68346 * 10 8 7 29 29 H 1.08995 * 109.47066 * 270.12155 * 1 2 3 30 30 H 1.09000 * 109.46565 * 30.12130 * 1 2 3 31 31 H 1.08999 * 109.46997 * 150.11909 * 1 2 3 32 32 H 1.07994 * 125.41761 * 179.78313 * 4 3 2 33 33 H 1.08996 * 109.76260 * 242.34534 * 11 10 8 34 34 H 1.09013 * 109.75548 * 3.05012 * 11 10 8 35 35 H 1.08994 * 109.25310 * 177.62961 * 12 11 10 36 36 H 1.08999 * 109.25526 * 297.10377 * 12 11 10 37 37 H 1.09012 * 110.90800 * 320.14061 * 15 13 12 38 38 H 1.08992 * 110.84776 * 196.56541 * 15 13 12 39 39 H 1.08993 * 109.90644 * 263.44074 * 16 15 13 40 40 H 1.09004 * 109.90162 * 142.37446 * 16 15 13 41 41 H 0.96997 * 120.00245 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.23343 * 112.20051 * 28 10 8 43 43 H 1.09003 * 109.19131 * 352.81339 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0059 5 7 3.6122 -0.6364 -0.0047 6 1 4.4188 -1.1751 -0.0078 7 6 2.3123 -1.1042 0.0024 8 6 1.8819 -2.5073 0.0059 9 8 0.8536 -2.8268 0.5725 10 7 2.6258 -3.4419 -0.6185 11 6 2.1410 -4.8223 -0.7764 12 6 2.1345 -5.1522 -2.2687 13 6 3.5316 -4.9674 -2.8668 14 1 4.2335 -5.7303 -2.5302 15 6 3.3466 -4.9327 -4.4204 16 6 2.8359 -3.4947 -4.6618 17 7 3.2701 -2.6769 -3.5145 18 6 2.9980 -1.3486 -3.3224 19 1 3.5072 -0.8001 -2.5438 20 6 2.0677 -0.7072 -4.1286 21 7 1.5602 -1.3296 -5.1715 22 14 1.5360 1.0394 -3.7335 23 1 2.3639 1.9966 -4.5104 24 1 0.1062 1.2152 -4.0943 25 1 1.7151 1.2949 -2.2816 26 6 4.0442 -3.5370 -2.6164 27 1 5.0905 -3.4989 -2.9199 28 6 3.9492 -3.1203 -1.1653 29 1 -0.3633 0.0022 1.0276 30 1 -0.3632 0.8889 -0.5157 31 1 -0.3633 -0.8910 -0.5120 32 1 4.3970 1.3743 -0.0107 33 1 2.8046 -5.5084 -0.2502 34 1 1.1309 -4.9062 -0.3753 35 1 1.8183 -6.1861 -2.4069 36 1 1.4349 -4.4909 -2.7800 37 1 2.6054 -5.6652 -4.7403 38 1 4.2973 -5.0959 -4.9279 39 1 1.7479 -3.4935 -4.7277 40 1 3.2638 -3.0987 -5.5828 41 1 0.9099 -0.8815 -5.7346 42 1 4.7123 -3.6449 -0.5905 43 1 4.1172 -2.0461 -1.0886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042380909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 76.419400 kcal Electronic energy + Delta-G solvation = -27578.636004 eV Core-core repulsion = 24047.434537 eV Total energy + Delta-G solvation = -3531.201467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92846 -39.70884 -37.98913 -34.99467 -33.45782 -32.57430 -31.43950 -30.51558 -29.18715 -28.50988 -26.81787 -24.72125 -24.12863 -22.93673 -21.96673 -20.89399 -19.98300 -19.31308 -18.73604 -17.49813 -16.49274 -16.29369 -15.55721 -15.35261 -14.82947 -14.48174 -14.23377 -14.02164 -13.86073 -13.58518 -13.05916 -12.79881 -12.66226 -12.46170 -12.30953 -12.02643 -11.73333 -11.66140 -11.52646 -11.22208 -10.93460 -10.81324 -10.65187 -10.29810 -10.10123 -9.88315 -9.85133 -9.68634 -9.56817 -9.44148 -9.22358 -8.50799 -8.33557 -7.89931 -6.82390 -5.71916 -3.06138 1.84411 3.13667 3.21516 3.42646 3.47743 3.58160 3.73816 3.81648 4.55255 4.80513 4.89664 4.98551 5.20829 5.27503 5.39524 5.45465 5.52145 5.56561 5.61519 5.71026 5.72519 5.84072 5.90819 6.05216 6.13920 6.15966 6.20860 6.24350 6.27024 6.35335 6.45607 6.51053 6.57432 6.59350 6.88079 6.96085 7.03485 7.46187 7.56609 7.63051 7.74942 7.79865 8.24028 8.35768 8.52479 9.18211 9.82617 10.48352 11.38781 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.009381 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.205940 B = 2983.889828 C = 4161.927838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.092 3.908 3 N -0.488 5.488 4 C 0.204 3.796 5 N -0.554 5.554 6 H 0.420 0.580 7 C -0.058 4.058 8 C 0.608 3.392 9 O -0.541 6.541 10 N -0.590 5.590 11 C 0.119 3.881 12 C -0.123 4.123 13 C -0.101 4.101 14 H 0.074 0.926 15 C -0.142 4.142 16 C 0.174 3.826 17 N -0.587 5.587 18 C -0.226 4.226 19 H 0.074 0.926 20 C 0.007 3.993 21 N -0.916 5.916 22 Si 0.870 3.130 23 H -0.298 1.298 24 H -0.295 1.295 25 H -0.233 1.233 26 C 0.154 3.846 27 H 0.024 0.976 28 C 0.092 3.908 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -5.326 8.756 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.041 4.041 3 N -0.208 5.208 4 C -0.080 4.080 5 N -0.165 5.165 6 H 0.264 0.736 7 C -0.173 4.173 8 C 0.397 3.603 9 O -0.419 6.419 10 N -0.322 5.322 11 C -0.003 4.003 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.180 4.180 16 C 0.050 3.950 17 N -0.312 5.312 18 C -0.354 4.354 19 H 0.091 0.909 20 C -0.191 4.191 21 N -0.562 5.562 22 Si 0.698 3.302 23 H -0.226 1.226 24 H -0.221 1.221 25 H -0.156 1.156 26 C 0.045 3.955 27 H 0.041 0.959 28 C -0.033 4.033 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.347 -4.522 8.970 11.380 hybrid contribution 0.676 -0.039 -0.423 0.798 sum 6.022 -4.561 8.547 11.407 Atomic orbital electron populations 1.20103 0.87513 1.02941 1.02050 1.20665 0.96281 0.86690 1.00449 1.70035 1.00365 1.30466 1.19938 1.24876 0.97276 0.82297 1.03533 1.43925 1.07883 1.08578 1.56107 0.73568 1.20585 0.84147 0.94659 1.17892 1.16794 0.83091 0.82605 0.77835 1.90763 1.25016 1.80611 1.45487 1.47703 1.18595 1.10133 1.55739 1.21524 1.00637 0.81359 0.96816 1.21838 0.98173 1.01144 0.94950 1.22459 0.96230 0.96922 0.96505 0.90732 1.23210 1.00134 1.00235 0.94455 1.21270 0.98950 0.84874 0.89939 1.44235 1.61976 1.05890 1.19145 1.18729 1.17963 0.83396 1.15313 0.90868 1.24777 0.98383 0.98392 0.97509 1.69963 1.32835 1.36917 1.16463 0.86724 0.77845 0.84227 0.81376 1.22569 1.22131 1.15576 1.20672 0.95344 0.90394 0.89042 0.95867 1.21966 0.83380 1.01897 0.96096 0.91196 0.91442 0.90684 0.77659 0.92065 0.89405 0.91955 0.89968 0.92179 0.92831 0.92607 0.95033 0.93939 0.92279 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 9.79 36.01 0.35 -0.92 16 2 C 0.09 1.82 6.41 -82.52 -0.53 1.29 16 3 N -0.49 -9.16 9.87 -10.64 -0.11 -9.27 16 4 C 0.20 3.06 13.01 -90.56 -1.18 1.89 16 5 N -0.55 -8.30 4.22 -10.79 -0.05 -8.35 16 6 H 0.42 5.02 6.47 -40.82 -0.26 4.75 16 7 C -0.06 -1.07 6.20 -82.14 -0.51 -1.58 16 8 C 0.61 11.84 7.44 -12.81 -0.10 11.74 16 9 O -0.54 -11.58 15.44 5.21 0.08 -11.50 16 10 N -0.59 -10.16 2.97 -175.60 -0.52 -10.68 16 11 C 0.12 1.83 6.43 -3.77 -0.02 1.81 16 12 C -0.12 -1.97 5.05 -26.77 -0.14 -2.10 16 13 C -0.10 -1.60 3.68 -88.17 -0.32 -1.92 16 14 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.14 -2.48 6.36 -24.07 -0.15 -2.63 16 16 C 0.17 4.00 4.67 -2.74 -0.01 3.98 16 17 N -0.59 -13.44 3.20 -164.41 -0.53 -13.96 16 18 C -0.23 -5.72 9.56 -15.06 -0.14 -5.87 16 19 H 0.07 1.77 5.77 -52.49 -0.30 1.46 16 20 C 0.01 0.18 5.49 -17.43 -0.10 0.09 16 21 N -0.92 -26.55 10.47 55.49 0.58 -25.97 16 22 Si 0.87 21.76 29.56 -169.99 -5.02 16.73 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.23 -5.51 4.86 56.52 0.27 -5.24 16 26 C 0.15 2.77 2.97 -68.29 -0.20 2.57 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 C 0.09 1.43 5.18 -4.78 -0.02 1.41 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.50 7.45 -51.93 -0.39 1.11 16 32 H 0.21 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.44 7.10 -51.92 -0.37 1.07 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.67 6.85 -51.93 -0.36 1.32 16 37 H 0.06 0.97 7.98 -51.92 -0.41 0.56 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.46 6.66 -51.93 -0.35 1.12 16 40 H 0.03 0.81 7.92 -51.93 -0.41 0.40 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.41 2.16 -51.93 -0.11 1.30 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -33.11 326.91 -9.74 -42.85 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.03 Total: 5.47 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -3.08 Total: 9.75 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -0.62 Total: -68.23 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.11 -9.74 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042380909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.265 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds