Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33319 * 126.10970 * 2 1 4 4 C 1.30862 * 109.68615 * 180.27636 * 3 2 1 5 5 N 1.34502 * 109.16213 * 359.76140 * 4 3 2 6 6 H 0.96995 * 126.47459 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10400 * 179.87754 * 2 1 3 8 8 C 1.46763 * 126.84330 * 359.97438 * 7 2 1 9 9 O 1.21675 * 120.00212 * 327.54592 * 8 7 2 10 10 N 1.34785 * 119.99637 * 147.54901 * 8 7 2 11 11 C 1.47156 * 121.22157 * 187.65849 * 10 8 7 12 12 C 1.52834 * 107.97968 * 122.71649 * 11 10 8 13 13 C 1.53093 * 110.57940 * 57.34709 * 12 11 10 14 14 H 1.08996 * 112.49138 * 70.57468 * 13 12 11 15 15 C 1.56490 * 106.41748 * 195.41546 * 13 12 11 16 16 C 1.54499 * 102.40412 * 78.36210 * 15 13 12 17 17 N 1.47435 * 107.29868 * 22.91056 * 16 15 13 18 18 C 1.36935 * 126.06423 * 181.51843 * 17 16 15 19 19 H 1.08002 * 120.00416 * 190.97719 * 18 17 16 20 20 C 1.38811 * 119.99711 * 10.96763 * 18 17 16 21 21 N 1.31625 * 120.00096 * 352.25781 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 172.25639 * 20 18 17 23 23 H 1.48493 * 109.47135 * 94.31592 * 22 20 18 24 24 H 1.48508 * 109.46953 * 214.31839 * 22 20 18 25 25 H 1.48501 * 109.47110 * 334.31362 * 22 20 18 26 26 C 1.46479 * 107.88115 * 1.51481 * 17 16 15 27 27 H 1.09005 * 108.42118 * 89.26293 * 26 17 16 28 28 C 1.46755 * 121.22342 * 7.68346 * 10 8 7 29 29 H 1.08995 * 109.47066 * 270.12155 * 1 2 3 30 30 H 1.09000 * 109.46565 * 30.12130 * 1 2 3 31 31 H 1.08999 * 109.46997 * 150.11909 * 1 2 3 32 32 H 1.07994 * 125.41761 * 179.78313 * 4 3 2 33 33 H 1.08996 * 109.76260 * 242.34534 * 11 10 8 34 34 H 1.09013 * 109.75548 * 3.05012 * 11 10 8 35 35 H 1.08994 * 109.25310 * 177.62961 * 12 11 10 36 36 H 1.08999 * 109.25526 * 297.10377 * 12 11 10 37 37 H 1.09012 * 110.90800 * 320.14061 * 15 13 12 38 38 H 1.08992 * 110.84776 * 196.56541 * 15 13 12 39 39 H 1.08993 * 109.90644 * 263.44074 * 16 15 13 40 40 H 1.09004 * 109.90162 * 142.37446 * 16 15 13 41 41 H 0.96997 * 120.00245 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.23343 * 112.20051 * 28 10 8 43 43 H 1.09003 * 109.19131 * 352.81339 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0059 5 7 3.6122 -0.6364 -0.0047 6 1 4.4188 -1.1751 -0.0078 7 6 2.3123 -1.1042 0.0024 8 6 1.8819 -2.5073 0.0059 9 8 0.8536 -2.8268 0.5725 10 7 2.6258 -3.4419 -0.6185 11 6 2.1410 -4.8223 -0.7764 12 6 2.1345 -5.1522 -2.2687 13 6 3.5316 -4.9674 -2.8668 14 1 4.2335 -5.7303 -2.5302 15 6 3.3466 -4.9327 -4.4204 16 6 2.8359 -3.4947 -4.6618 17 7 3.2701 -2.6769 -3.5145 18 6 2.9980 -1.3486 -3.3224 19 1 3.5072 -0.8001 -2.5438 20 6 2.0677 -0.7072 -4.1286 21 7 1.5602 -1.3296 -5.1715 22 14 1.5360 1.0394 -3.7335 23 1 2.3639 1.9966 -4.5104 24 1 0.1062 1.2152 -4.0943 25 1 1.7151 1.2949 -2.2816 26 6 4.0442 -3.5370 -2.6164 27 1 5.0905 -3.4989 -2.9199 28 6 3.9492 -3.1203 -1.1653 29 1 -0.3633 0.0022 1.0276 30 1 -0.3632 0.8889 -0.5157 31 1 -0.3633 -0.8910 -0.5120 32 1 4.3970 1.3743 -0.0107 33 1 2.8046 -5.5084 -0.2502 34 1 1.1309 -4.9062 -0.3753 35 1 1.8183 -6.1861 -2.4069 36 1 1.4349 -4.4909 -2.7800 37 1 2.6054 -5.6652 -4.7403 38 1 4.2973 -5.0959 -4.9279 39 1 1.7479 -3.4935 -4.7277 40 1 3.2638 -3.0987 -5.5828 41 1 0.9099 -0.8815 -5.7346 42 1 4.7123 -3.6449 -0.5905 43 1 4.1172 -2.0461 -1.0886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042380909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 55.060480 kcal Electronic energy + Delta-G solvation = -27579.562196 eV Core-core repulsion = 24047.434537 eV Total energy + Delta-G solvation = -3532.127659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.24057 -41.10245 -39.49629 -36.50830 -35.01643 -34.08341 -33.00710 -31.94801 -30.68814 -30.13874 -28.24461 -26.45942 -25.62445 -24.32051 -23.27971 -22.24615 -21.70097 -20.68424 -20.08364 -19.00870 -18.16474 -17.66335 -16.97894 -16.81653 -16.46219 -16.02347 -15.70660 -15.55742 -15.30090 -15.08735 -14.52377 -14.25587 -14.03202 -13.86829 -13.73296 -13.71320 -13.20909 -13.11413 -13.06369 -12.92121 -12.67552 -12.47700 -12.36499 -12.03518 -11.74658 -11.54257 -11.34074 -11.20280 -11.07000 -10.85879 -10.66539 -10.50248 -9.70468 -9.24683 -8.75003 -7.80423 -5.10527 0.48907 1.41134 1.50893 1.67879 1.77613 1.97463 2.15640 2.46947 2.55476 3.41105 3.48818 3.57887 3.73749 3.87791 3.97876 4.04120 4.16137 4.22487 4.31999 4.40662 4.48197 4.55686 4.62145 4.68772 4.73410 4.81766 4.85129 4.86929 4.92877 4.96428 5.00862 5.14807 5.17824 5.26033 5.51943 5.59010 5.62849 5.67066 5.71652 5.86028 6.26168 6.36836 6.46147 7.03908 7.11981 7.15640 7.87283 8.52989 9.30356 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.009381 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.205940 B = 2983.889828 C = 4161.927838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.064 3.936 3 N -0.523 5.523 4 C 0.221 3.779 5 N -0.541 5.541 6 H 0.437 0.563 7 C -0.073 4.073 8 C 0.598 3.402 9 O -0.574 6.574 10 N -0.590 5.590 11 C 0.117 3.883 12 C -0.117 4.117 13 C -0.085 4.085 14 H 0.126 0.874 15 C -0.129 4.129 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.192 4.192 19 H 0.090 0.910 20 C -0.058 4.058 21 N -0.951 5.951 22 Si 0.912 3.088 23 H -0.307 1.307 24 H -0.322 1.322 25 H -0.211 1.211 26 C 0.141 3.859 27 H 0.043 0.957 28 C 0.089 3.911 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.009 0.991 40 H -0.010 1.010 41 H 0.235 0.765 42 H 0.114 0.886 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 -7.111 10.991 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 N -0.244 5.244 4 C -0.063 4.063 5 N -0.152 5.152 6 H 0.284 0.716 7 C -0.189 4.189 8 C 0.387 3.613 9 O -0.454 6.454 10 N -0.320 5.320 11 C -0.004 4.004 12 C -0.155 4.155 13 C -0.104 4.104 14 H 0.144 0.856 15 C -0.168 4.168 16 C 0.055 3.945 17 N -0.329 5.329 18 C -0.321 4.321 19 H 0.107 0.893 20 C -0.251 4.251 21 N -0.602 5.602 22 Si 0.743 3.257 23 H -0.236 1.236 24 H -0.251 1.251 25 H -0.133 1.133 26 C 0.034 3.966 27 H 0.061 0.939 28 C -0.034 4.034 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.272 0.728 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.008 0.992 41 H 0.044 0.956 42 H 0.132 0.868 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.112 -6.348 11.243 15.803 hybrid contribution -0.382 0.477 -1.097 1.256 sum 8.730 -5.872 10.145 14.615 Atomic orbital electron populations 1.20032 0.88117 1.01528 1.02647 1.20843 0.96637 0.87768 1.01626 1.70009 1.01909 1.30643 1.21806 1.25863 0.97476 0.82732 1.00197 1.43847 1.07270 1.08785 1.55325 0.71594 1.20495 0.85562 0.94153 1.18733 1.17026 0.82940 0.83288 0.78061 1.90734 1.26344 1.81176 1.47138 1.47853 1.18948 1.10464 1.54756 1.21688 1.00985 0.81177 0.96552 1.21769 0.97353 1.01601 0.94823 1.22531 0.96720 0.96665 0.94511 0.85624 1.23071 1.01010 0.96099 0.96582 1.20987 0.96159 0.88541 0.88799 1.44475 1.62016 1.05809 1.20635 1.19082 1.15250 0.84737 1.13080 0.89269 1.25331 1.00338 1.00745 0.98640 1.70167 1.34321 1.37606 1.18064 0.86055 0.75668 0.81946 0.82063 1.23602 1.25095 1.13260 1.21035 0.95165 0.90827 0.89547 0.93936 1.22144 0.83752 1.02474 0.95061 0.89681 0.91710 0.93053 0.72805 0.87591 0.91168 0.88953 0.95505 0.91025 0.90928 0.97254 0.99196 0.95604 0.86844 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.52 9.79 71.24 0.70 -1.82 16 2 C 0.06 2.51 6.41 41.96 0.27 2.78 16 3 N -0.52 -18.73 9.87 -187.59 -1.85 -20.58 16 4 C 0.22 5.88 13.01 180.33 2.35 8.23 16 5 N -0.54 -14.38 4.22 -188.04 -0.79 -15.17 16 6 H 0.44 8.40 6.47 -92.71 -0.60 7.80 16 7 C -0.07 -2.63 6.20 40.01 0.25 -2.38 16 8 C 0.60 22.64 7.44 86.47 0.64 23.28 16 9 O -0.57 -24.75 15.44 -4.27 -0.07 -24.81 16 10 N -0.59 -18.57 2.97 -827.71 -2.46 -21.03 16 11 C 0.12 3.22 6.43 86.20 0.55 3.78 16 12 C -0.12 -3.41 5.05 30.57 0.15 -3.26 16 13 C -0.09 -2.27 3.68 -9.21 -0.03 -2.30 16 14 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.13 -4.18 6.36 32.32 0.21 -3.98 16 16 C 0.18 8.44 4.67 86.71 0.40 8.85 16 17 N -0.60 -27.14 3.20 -674.08 -2.15 -29.30 16 18 C -0.19 -9.67 9.56 84.03 0.80 -8.87 16 19 H 0.09 4.13 5.77 -2.91 -0.02 4.11 16 20 C -0.06 -3.28 5.49 84.86 0.47 -2.82 16 21 N -0.95 -58.53 10.47 21.65 0.23 -58.31 16 22 Si 0.91 46.56 29.56 68.60 2.03 48.58 16 23 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 24 H -0.32 -17.77 7.11 99.48 0.71 -17.07 16 25 H -0.21 -9.87 4.86 99.48 0.48 -9.38 16 26 C 0.14 4.48 2.97 44.77 0.13 4.62 16 27 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 28 C 0.09 2.36 5.18 85.76 0.44 2.81 16 29 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 2.17 7.45 -2.39 -0.02 2.15 16 32 H 0.26 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.20 7.10 -2.38 -0.02 2.18 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 1.08 6.85 -2.39 -0.02 1.06 16 37 H 0.07 2.16 7.98 -2.38 -0.02 2.14 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.01 0.51 6.66 -2.39 -0.02 0.50 16 40 H -0.01 -0.55 7.92 -2.39 -0.02 -0.57 16 41 H 0.23 14.61 8.31 -92.71 -0.77 13.83 16 42 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 2.28 2.16 -2.39 -0.01 2.27 16 Total: -1.00 -79.57 326.91 2.49 -77.09 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.22 Total: 14.62 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 7.33 Total: 28.90 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -7.03 Total: -144.39 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -79.57 2.49 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042380909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.146 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds