Wall clock time and date at job start Fri Apr 10 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32134 * 119.90129 * 2 1 4 4 C 1.32084 * 120.07095 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.06090 * 180.25717 * 4 3 2 6 6 C 1.39432 * 119.87135 * 359.97438 * 4 3 2 7 7 C 1.48156 * 120.09672 * 180.02562 * 6 4 3 8 8 O 1.21518 * 119.99943 * 284.29018 * 7 6 4 9 9 N 1.34779 * 119.99878 * 104.28032 * 7 6 4 10 10 C 1.46498 * 119.99963 * 5.03790 * 9 7 6 11 11 C 1.46501 * 120.00029 * 185.03106 * 9 7 6 12 12 C 1.53940 * 113.74555 * 218.74455 * 11 9 7 13 13 N 1.47808 * 86.03982 * 222.08533 * 12 11 9 14 14 C 1.36942 * 134.46097 * 204.64816 * 13 12 11 15 15 H 1.07995 * 120.00052 * 179.86372 * 14 13 12 16 16 C 1.38808 * 119.99496 * 359.86119 * 14 13 12 17 17 N 1.31625 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46995 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47394 * 120.00122 * 18 16 14 21 21 H 1.48507 * 109.46832 * 239.99982 * 18 16 14 22 22 C 1.47584 * 91.04805 * 24.54539 * 13 12 11 23 23 N 1.33001 * 119.81075 * 359.97438 * 6 4 3 24 24 C 1.31799 * 119.92200 * 0.02562 * 23 6 4 25 25 C 1.50697 * 119.93215 * 179.97438 * 24 23 6 26 26 H 1.09001 * 109.46890 * 270.01634 * 1 2 3 27 27 H 1.08999 * 109.47503 * 30.01837 * 1 2 3 28 28 H 1.09004 * 109.47497 * 150.02257 * 1 2 3 29 29 H 1.08998 * 109.47193 * 264.55578 * 5 4 3 30 30 H 1.09003 * 109.47090 * 24.55602 * 5 4 3 31 31 H 1.08999 * 109.47048 * 144.55256 * 5 4 3 32 32 H 1.09001 * 109.47398 * 84.83408 * 10 9 7 33 33 H 1.09003 * 109.46683 * 204.83041 * 10 9 7 34 34 H 1.08999 * 109.47147 * 324.82983 * 10 9 7 35 35 H 1.09004 * 112.94115 * 350.33943 * 11 9 7 36 36 H 1.08996 * 113.76914 * 336.34877 * 12 11 9 37 37 H 1.09000 * 113.76766 * 107.74447 * 12 11 9 38 38 H 0.96999 * 120.00037 * 180.02562 * 17 16 14 39 39 H 1.08997 * 113.76933 * 221.14884 * 22 13 12 40 40 H 1.09003 * 113.76646 * 89.75823 * 22 13 12 41 41 H 1.09001 * 109.47618 * 89.99842 * 25 24 23 42 42 H 1.09001 * 109.47329 * 209.99986 * 25 24 23 43 43 H 1.08998 * 109.47785 * 329.99796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2375 2.4559 0.0053 6 6 4.1845 -0.0577 -0.0005 7 6 5.6661 -0.0591 -0.0005 8 8 6.2739 0.2001 -1.0203 9 7 6.3397 -0.3477 1.1307 10 6 5.6110 -0.7673 2.3303 11 6 7.8006 -0.2419 1.1605 12 6 8.4863 -1.3565 1.9711 13 7 9.3616 -0.2905 2.5025 14 6 10.6242 -0.2612 3.0319 15 1 11.0526 0.6761 3.3549 16 6 11.3533 -1.4361 3.1533 17 7 10.8312 -2.5783 2.7592 18 14 13.0753 -1.3963 3.8761 19 1 13.4279 0.0000 4.2384 20 1 13.1225 -2.2501 5.0901 21 1 14.0448 -1.9070 2.8737 22 6 8.3299 0.7293 2.2312 23 7 3.5165 -1.2078 0.0005 24 6 2.1986 -1.2026 0.0010 25 6 1.4415 -2.5055 0.0016 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 4.5027 2.7271 -1.0165 30 1 3.6084 3.2347 0.4364 31 1 5.1446 2.3508 0.6005 32 1 5.4272 -1.8408 2.2869 33 1 6.2040 -0.5357 3.2151 34 1 4.6598 -0.2375 2.3815 35 1 8.2355 -0.0861 0.1732 36 1 7.8426 -1.8121 2.7235 37 1 9.0085 -2.0894 1.3560 38 1 11.3406 -3.3994 2.8444 39 1 8.7274 1.6587 1.8235 40 1 7.6401 0.8877 3.0602 41 1 1.2593 -2.8196 1.0294 42 1 0.4892 -2.3727 -0.5119 43 1 2.0281 -3.2670 -0.5123 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043284999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:17 Heat of formation + Delta-G solvation = 73.060923 kcal Electronic energy + Delta-G solvation = -25036.703813 eV Core-core repulsion = 21505.356711 eV Total energy + Delta-G solvation = -3531.347102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66212 -39.64674 -37.65489 -35.21987 -34.76045 -34.22690 -31.97954 -30.55392 -29.25815 -27.80186 -26.84501 -26.25884 -24.86123 -24.05374 -23.17472 -22.10862 -20.22500 -18.65863 -18.35303 -17.35258 -16.86146 -16.33620 -15.66458 -15.41960 -15.09196 -14.70670 -14.34320 -13.86055 -13.83424 -13.61578 -13.41660 -13.33816 -12.97751 -12.84043 -12.54278 -12.47378 -12.44707 -12.12994 -12.03596 -11.86931 -11.73667 -11.58950 -11.34661 -11.03824 -10.90681 -10.74483 -10.34342 -10.15488 -9.99492 -9.59670 -9.20022 -9.01657 -8.84220 -8.25155 -6.94958 -5.81339 -3.14746 0.37891 0.87081 2.50376 2.99313 3.30760 3.37763 3.42908 3.45566 3.68865 3.93132 4.13417 4.31972 4.44347 4.68787 4.70363 4.91965 5.06321 5.13133 5.15945 5.26882 5.28935 5.37834 5.41105 5.43046 5.47097 5.49976 5.54580 5.66135 5.72905 5.85245 5.86732 6.01695 6.08536 6.16688 6.37301 6.51560 6.68420 7.02656 7.16177 7.26309 7.47466 7.52034 7.60342 7.92049 8.20759 8.99240 9.65528 10.51333 11.35752 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.003147 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.393056 B = 8896.620023 C = 9350.148427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.091 3.909 3 N -0.436 5.436 4 C 0.115 3.885 5 C -0.105 4.105 6 C 0.052 3.948 7 C 0.579 3.421 8 O -0.525 6.525 9 N -0.582 5.582 10 C 0.084 3.916 11 C 0.088 3.912 12 C 0.158 3.842 13 N -0.605 5.605 14 C -0.224 4.224 15 H 0.083 0.917 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.109 3.891 23 N -0.404 5.404 24 C 0.073 3.927 25 C -0.102 4.102 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.672 4.173 -3.575 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 N -0.152 5.152 4 C -0.025 4.025 5 C -0.162 4.162 6 C -0.091 4.091 7 C 0.363 3.637 8 O -0.400 6.400 9 N -0.314 5.314 10 C -0.060 4.060 11 C -0.015 4.015 12 C 0.032 3.968 13 N -0.332 5.332 14 C -0.351 4.351 15 H 0.101 0.899 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.018 4.018 23 N -0.120 5.120 24 C -0.070 4.070 25 C -0.159 4.159 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.957 4.178 -3.992 22.705 hybrid contribution 0.843 -0.181 0.597 1.049 sum -21.114 3.998 -3.395 21.756 Atomic orbital electron populations 1.20800 0.87513 1.04123 1.03681 1.22310 0.98441 0.88876 0.95418 1.68205 1.07632 1.28913 1.10424 1.22165 0.90041 0.96088 0.94249 1.20775 0.99341 0.91849 1.04270 1.22017 0.96153 0.90245 1.00706 1.17683 0.84630 0.77376 0.84039 1.90802 1.68240 1.49211 1.31785 1.47968 1.08017 1.64623 1.10779 1.21734 0.95785 1.00235 0.88199 1.24211 0.75449 1.00615 1.01180 1.22669 0.89190 0.91929 0.93014 1.45700 1.11176 1.03027 1.73280 1.19032 0.87799 0.94049 1.34224 0.89927 1.24817 0.98808 0.95221 1.01482 1.69827 1.37046 0.97742 1.51949 0.86013 0.83787 0.77394 0.78346 1.20397 1.21703 1.21596 1.22982 0.90626 0.94004 0.94220 1.68317 1.08176 1.28109 1.07417 1.22150 0.90123 0.96904 0.97822 1.20773 0.99184 0.92286 1.03707 0.89675 0.90062 0.89723 0.89154 0.89682 0.89969 0.91905 0.89713 0.92899 0.86302 0.94894 0.90309 0.93546 0.93248 0.94635 0.89722 0.89882 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.78 36.00 0.35 -0.28 16 2 C 0.09 0.96 6.79 -82.28 -0.56 0.40 16 3 N -0.44 -5.48 10.34 -5.24 -0.05 -5.53 16 4 C 0.11 1.56 6.82 -82.04 -0.56 1.00 16 5 C -0.10 -1.20 9.68 36.00 0.35 -0.85 16 6 C 0.05 0.79 4.69 -82.84 -0.39 0.40 16 7 C 0.58 10.21 5.88 -12.19 -0.07 10.14 16 8 O -0.53 -10.80 16.58 5.35 0.09 -10.71 16 9 N -0.58 -10.01 3.09 -176.75 -0.55 -10.56 16 10 C 0.08 1.21 8.87 59.85 0.53 1.74 16 11 C 0.09 1.77 4.41 -70.15 -0.31 1.46 16 12 C 0.16 3.72 6.93 -2.84 -0.02 3.70 16 13 N -0.61 -15.43 3.70 -177.89 -0.66 -16.09 16 14 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.92 -27.13 11.39 55.49 0.63 -26.49 16 18 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.11 2.22 8.43 -2.97 -0.03 2.19 16 23 N -0.40 -5.87 10.31 -5.89 -0.06 -5.93 16 24 C 0.07 0.82 6.79 -82.43 -0.56 0.26 16 25 C -0.10 -0.73 9.78 36.00 0.35 -0.38 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.33 5.94 -51.93 -0.31 0.03 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.98 7.28 -51.93 -0.38 0.60 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.24 6.16 -51.93 -0.32 0.92 16 34 H 0.05 0.68 6.99 -51.93 -0.36 0.32 16 35 H 0.12 2.57 7.20 -51.93 -0.37 2.19 16 36 H 0.03 0.77 6.71 -51.93 -0.35 0.42 16 37 H 0.08 2.09 7.16 -51.93 -0.37 1.72 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.68 6.92 -51.93 -0.36 0.32 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.37 5.94 -51.93 -0.31 0.06 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -33.97 352.95 -7.53 -41.50 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.06 Total: -1.64 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -1.17 Total: 13.12 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.69 Total: -64.61 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.97 -7.53 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043284999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.556 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds