Wall clock time and date at job start Fri Apr 10 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32134 * 119.90129 * 2 1 4 4 C 1.32084 * 120.07095 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.06090 * 180.25717 * 4 3 2 6 6 C 1.39432 * 119.87135 * 359.97438 * 4 3 2 7 7 C 1.48156 * 120.09672 * 180.02562 * 6 4 3 8 8 O 1.21518 * 119.99943 * 284.29018 * 7 6 4 9 9 N 1.34779 * 119.99878 * 104.28032 * 7 6 4 10 10 C 1.46498 * 119.99963 * 5.03790 * 9 7 6 11 11 C 1.46501 * 120.00029 * 185.03106 * 9 7 6 12 12 C 1.53940 * 113.74555 * 218.74455 * 11 9 7 13 13 N 1.47808 * 86.03982 * 222.08533 * 12 11 9 14 14 C 1.36942 * 134.46097 * 204.64816 * 13 12 11 15 15 H 1.07995 * 120.00052 * 179.86372 * 14 13 12 16 16 C 1.38808 * 119.99496 * 359.86119 * 14 13 12 17 17 N 1.31625 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46995 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47394 * 120.00122 * 18 16 14 21 21 H 1.48507 * 109.46832 * 239.99982 * 18 16 14 22 22 C 1.47584 * 91.04805 * 24.54539 * 13 12 11 23 23 N 1.33001 * 119.81075 * 359.97438 * 6 4 3 24 24 C 1.31799 * 119.92200 * 0.02562 * 23 6 4 25 25 C 1.50697 * 119.93215 * 179.97438 * 24 23 6 26 26 H 1.09001 * 109.46890 * 270.01634 * 1 2 3 27 27 H 1.08999 * 109.47503 * 30.01837 * 1 2 3 28 28 H 1.09004 * 109.47497 * 150.02257 * 1 2 3 29 29 H 1.08998 * 109.47193 * 264.55578 * 5 4 3 30 30 H 1.09003 * 109.47090 * 24.55602 * 5 4 3 31 31 H 1.08999 * 109.47048 * 144.55256 * 5 4 3 32 32 H 1.09001 * 109.47398 * 84.83408 * 10 9 7 33 33 H 1.09003 * 109.46683 * 204.83041 * 10 9 7 34 34 H 1.08999 * 109.47147 * 324.82983 * 10 9 7 35 35 H 1.09004 * 112.94115 * 350.33943 * 11 9 7 36 36 H 1.08996 * 113.76914 * 336.34877 * 12 11 9 37 37 H 1.09000 * 113.76766 * 107.74447 * 12 11 9 38 38 H 0.96999 * 120.00037 * 180.02562 * 17 16 14 39 39 H 1.08997 * 113.76933 * 221.14884 * 22 13 12 40 40 H 1.09003 * 113.76646 * 89.75823 * 22 13 12 41 41 H 1.09001 * 109.47618 * 89.99842 * 25 24 23 42 42 H 1.09001 * 109.47329 * 209.99986 * 25 24 23 43 43 H 1.08998 * 109.47785 * 329.99796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2375 2.4559 0.0053 6 6 4.1845 -0.0577 -0.0005 7 6 5.6661 -0.0591 -0.0005 8 8 6.2739 0.2001 -1.0203 9 7 6.3397 -0.3477 1.1307 10 6 5.6110 -0.7673 2.3303 11 6 7.8006 -0.2419 1.1605 12 6 8.4863 -1.3565 1.9711 13 7 9.3616 -0.2905 2.5025 14 6 10.6242 -0.2612 3.0319 15 1 11.0526 0.6761 3.3549 16 6 11.3533 -1.4361 3.1533 17 7 10.8312 -2.5783 2.7592 18 14 13.0753 -1.3963 3.8761 19 1 13.4279 0.0000 4.2384 20 1 13.1225 -2.2501 5.0901 21 1 14.0448 -1.9070 2.8737 22 6 8.3299 0.7293 2.2312 23 7 3.5165 -1.2078 0.0005 24 6 2.1986 -1.2026 0.0010 25 6 1.4415 -2.5055 0.0016 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 4.5027 2.7271 -1.0165 30 1 3.6084 3.2347 0.4364 31 1 5.1446 2.3508 0.6005 32 1 5.4272 -1.8408 2.2869 33 1 6.2040 -0.5357 3.2151 34 1 4.6598 -0.2375 2.3815 35 1 8.2355 -0.0861 0.1732 36 1 7.8426 -1.8121 2.7235 37 1 9.0085 -2.0894 1.3560 38 1 11.3406 -3.3994 2.8444 39 1 8.7274 1.6587 1.8235 40 1 7.6401 0.8877 3.0602 41 1 1.2593 -2.8196 1.0294 42 1 0.4892 -2.3727 -0.5119 43 1 2.0281 -3.2670 -0.5123 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043284999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:16 Heat of formation + Delta-G solvation = 49.219422 kcal Electronic energy + Delta-G solvation = -25037.737658 eV Core-core repulsion = 21505.356711 eV Total energy + Delta-G solvation = -3532.380947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.65417 -41.09259 -39.30909 -36.21156 -36.03112 -35.33725 -33.97844 -31.34869 -30.19613 -29.45642 -28.12109 -27.36934 -26.66756 -25.32663 -24.40268 -23.25086 -21.63110 -20.22781 -19.35939 -18.91497 -18.52219 -17.81628 -16.96064 -16.64257 -16.32106 -16.14802 -15.75759 -15.54690 -14.67329 -14.66994 -14.52222 -14.11356 -13.96119 -13.87645 -13.73171 -13.61658 -13.40775 -13.36311 -13.30846 -13.22971 -13.11142 -12.84048 -12.75694 -12.61280 -12.48639 -12.15704 -11.96584 -11.87283 -11.58700 -11.45915 -10.90933 -10.20076 -9.91979 -9.75872 -8.99175 -7.94061 -5.29040 -0.56647 -0.06843 1.17363 1.45463 1.47327 1.57513 1.66417 2.37336 2.46084 2.80458 2.93159 3.23735 3.25467 3.36007 3.40914 3.73314 3.84027 3.92558 4.06223 4.11379 4.23733 4.33825 4.47431 4.49586 4.54739 4.64047 4.65699 4.72333 4.76045 4.78682 4.83307 4.87645 4.99972 5.07483 5.08380 5.10234 5.17717 5.43890 5.47230 5.56260 5.85762 6.09182 6.17798 6.59498 6.81168 6.86609 7.55571 8.47668 9.23135 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.003147 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.393056 B = 8896.620023 C = 9350.148427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.101 3.899 3 N -0.447 5.447 4 C 0.109 3.891 5 C -0.102 4.102 6 C 0.024 3.976 7 C 0.583 3.417 8 O -0.564 6.564 9 N -0.581 5.581 10 C 0.088 3.912 11 C 0.112 3.888 12 C 0.161 3.839 13 N -0.634 5.634 14 C -0.234 4.234 15 H 0.090 0.910 16 C -0.066 4.066 17 N -0.953 5.953 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.293 1.293 22 C 0.119 3.881 23 N -0.431 5.431 24 C 0.069 3.931 25 C -0.100 4.100 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.250 0.750 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.470 4.929 -2.790 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.042 4.042 3 N -0.163 5.163 4 C -0.030 4.030 5 C -0.160 4.160 6 C -0.117 4.117 7 C 0.368 3.632 8 O -0.442 6.442 9 N -0.312 5.312 10 C -0.054 4.054 11 C 0.008 3.992 12 C 0.035 3.965 13 N -0.361 5.361 14 C -0.362 4.362 15 H 0.107 0.893 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.811 3.189 19 H -0.187 1.187 20 H -0.217 1.217 21 H -0.221 1.221 22 C -0.007 4.007 23 N -0.148 5.148 24 C -0.075 4.075 25 C -0.158 4.158 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.135 0.865 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.771 4.982 -3.194 25.468 hybrid contribution 1.495 -0.443 0.312 1.590 sum -23.276 4.539 -2.881 23.889 Atomic orbital electron populations 1.21015 0.83922 1.05681 1.05339 1.23125 1.00587 0.88026 0.92475 1.68333 1.06906 1.29896 1.11164 1.22313 0.90669 0.95933 0.94076 1.20785 0.99224 0.91793 1.04167 1.21556 0.94411 0.91467 1.04243 1.18050 0.85933 0.76044 0.83152 1.90766 1.69527 1.50806 1.33071 1.47880 1.06795 1.64637 1.11891 1.21802 0.96299 1.00507 0.86786 1.23531 0.77322 0.98669 0.99698 1.22515 0.89120 0.91834 0.93044 1.45993 1.11649 1.05045 1.73446 1.19437 0.89035 0.94345 1.33378 0.89272 1.25684 1.02741 0.94981 1.02520 1.70018 1.38427 0.98146 1.53568 0.84952 0.78953 0.77940 0.77099 1.18713 1.21745 1.22051 1.23072 0.89529 0.93437 0.94663 1.68253 1.10054 1.28078 1.08400 1.22872 0.89128 0.99007 0.96452 1.20955 0.99831 0.89835 1.05136 0.87644 0.89748 0.86939 0.89350 0.87702 0.90807 0.91884 0.89710 0.90833 0.88234 0.94506 0.94188 0.94149 0.92167 0.92091 0.87985 0.86543 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.78 71.24 0.70 -0.10 16 2 C 0.10 1.83 6.79 42.63 0.29 2.12 16 3 N -0.45 -10.34 10.34 -170.49 -1.76 -12.10 16 4 C 0.11 2.87 6.82 42.81 0.29 3.16 16 5 C -0.10 -2.29 9.68 71.24 0.69 -1.60 16 6 C 0.02 0.73 4.69 41.89 0.20 0.93 16 7 C 0.58 20.99 5.88 86.88 0.51 21.50 16 8 O -0.56 -24.13 16.58 -3.77 -0.06 -24.19 16 9 N -0.58 -20.23 3.09 -831.40 -2.57 -22.80 16 10 C 0.09 2.50 8.87 127.77 1.13 3.64 16 11 C 0.11 4.61 4.41 46.74 0.21 4.81 16 12 C 0.16 7.86 6.93 86.44 0.60 8.46 16 13 N -0.63 -32.79 3.70 -716.73 -2.65 -35.45 16 14 C -0.23 -13.14 10.70 84.03 0.90 -12.24 16 15 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 16 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 17 N -0.95 -57.98 11.39 21.65 0.25 -57.74 16 18 Si 0.98 45.86 29.55 68.60 2.03 47.88 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 C 0.12 4.80 8.43 86.48 0.73 5.53 16 23 N -0.43 -12.21 10.31 -172.54 -1.78 -13.99 16 24 C 0.07 1.40 6.79 42.68 0.29 1.69 16 25 C -0.10 -1.10 9.78 71.24 0.70 -0.41 16 26 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 0.27 5.94 -2.38 -0.01 0.26 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.75 7.28 -2.39 -0.02 1.73 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.40 6.16 -2.39 -0.01 2.39 16 34 H 0.07 1.80 6.99 -2.39 -0.02 1.78 16 35 H 0.10 4.51 7.20 -2.39 -0.02 4.49 16 36 H 0.04 1.76 6.71 -2.39 -0.02 1.74 16 37 H 0.04 2.24 7.16 -2.39 -0.02 2.23 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.21 6.92 -2.39 -0.02 2.19 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 0.48 5.94 -2.39 -0.01 0.46 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -76.20 352.95 2.17 -74.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.03 Total: 10.18 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 7.70 Total: 34.18 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -8.52 Total: -142.07 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.20 2.17 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043284999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.246 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds