Wall clock time and date at job start Fri Apr 10 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 C 1.50696 * 109.47368 * 120.00459 * 2 1 3 5 5 N 1.32157 * 120.53598 * 303.64206 * 4 2 1 6 6 C 1.31860 * 120.96499 * 180.31244 * 5 4 2 7 7 N 1.31882 * 122.09913 * 359.66055 * 6 5 4 8 8 C 1.32135 * 120.96363 * 0.02562 * 7 6 5 9 9 C 1.39932 * 120.53788 * 123.33901 * 4 2 1 10 10 C 1.47837 * 120.94107 * 359.97438 * 9 4 2 11 11 O 1.21547 * 119.99868 * 46.30646 * 10 9 4 12 12 N 1.34774 * 119.99555 * 226.30786 * 10 9 4 13 13 C 1.46497 * 120.00590 * 5.46655 * 12 10 9 14 14 C 1.46497 * 119.99474 * 185.46174 * 12 10 9 15 15 C 1.53949 * 113.84152 * 141.35365 * 14 12 10 16 16 N 1.47585 * 86.11449 * 90.74956 * 15 14 12 17 17 C 1.36939 * 134.48767 * 204.63952 * 16 15 14 18 18 H 1.08003 * 119.99348 * 180.02562 * 17 16 15 19 19 C 1.38803 * 120.00449 * 0.02562 * 17 16 15 20 20 N 1.31625 * 120.00124 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 59.99881 * 21 19 17 23 23 H 1.48504 * 109.47555 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47323 * 300.00223 * 21 19 17 25 25 C 1.47575 * 91.01276 * 24.64546 * 16 15 14 26 26 H 1.09001 * 109.47016 * 299.99871 * 1 2 3 27 27 H 1.09004 * 109.47600 * 59.99789 * 1 2 3 28 28 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46970 * 240.00686 * 2 1 3 30 30 H 1.09008 * 109.47293 * 300.00238 * 3 2 1 31 31 H 1.09001 * 109.46970 * 60.00100 * 3 2 1 32 32 H 1.09001 * 109.47466 * 180.02562 * 3 2 1 33 33 H 1.08000 * 118.95011 * 179.67889 * 6 5 4 34 34 H 1.08001 * 120.53699 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46677 * 274.48869 * 13 12 10 36 36 H 1.08999 * 109.46831 * 34.48306 * 13 12 10 37 37 H 1.09001 * 109.47197 * 154.48574 * 13 12 10 38 38 H 1.08998 * 112.94991 * 9.66977 * 14 12 10 39 39 H 1.08998 * 113.77246 * 205.05350 * 15 14 12 40 40 H 1.08998 * 113.76681 * 336.45226 * 15 14 12 41 41 H 0.96992 * 119.99899 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.76382 * 221.05503 * 25 16 15 43 43 H 1.09004 * 113.77438 * 89.66113 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.6617 -0.3115 2.4345 6 6 2.1009 -0.9232 3.5170 7 7 2.9179 -1.9566 3.4552 8 6 3.3343 -2.4255 2.2921 9 6 2.8939 -1.8072 1.1161 10 6 3.3312 -2.2955 -0.2090 11 8 3.7173 -1.5074 -1.0500 12 7 3.3015 -3.6145 -0.4845 13 6 2.7251 -4.5520 0.4824 14 6 3.8457 -4.1105 -1.7509 15 6 4.6019 -5.4454 -1.6229 16 7 3.3045 -6.0917 -1.9009 17 6 2.7635 -7.3179 -1.6200 18 1 1.7607 -7.5529 -1.9450 19 6 3.5039 -8.2588 -0.9177 20 7 4.7262 -7.9725 -0.5220 21 14 2.7657 -9.9312 -0.5340 22 1 2.4184 -10.6218 -1.8020 23 1 3.7516 -10.7464 0.2202 24 1 1.5397 -9.7550 0.2854 25 6 2.8245 -4.8857 -2.6031 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.7812 -0.5666 4.4850 34 1 4.0037 -3.2719 2.2496 35 1 3.4848 -4.8357 1.2107 36 1 1.8893 -4.0765 0.9957 37 1 2.3723 -5.4414 -0.0398 38 1 4.3921 -3.3483 -2.3064 39 1 5.3477 -5.6043 -2.4017 40 1 4.9836 -5.6397 -0.6206 41 1 5.2434 -8.6299 -0.0309 42 1 1.7872 -4.6331 -2.3834 43 1 3.0482 -4.8801 -3.6700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044304221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:22 Heat of formation + Delta-G solvation = 77.246672 kcal Electronic energy + Delta-G solvation = -25738.058577 eV Core-core repulsion = 22206.892983 eV Total energy + Delta-G solvation = -3531.165594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46979 -39.61188 -37.73687 -36.14040 -34.28436 -33.04841 -32.22013 -31.40556 -28.01361 -27.21194 -26.38966 -25.28244 -24.94558 -24.88176 -23.03587 -20.95115 -20.63214 -18.48950 -18.02882 -17.22683 -16.76389 -16.65962 -15.91546 -15.17561 -14.89560 -14.79052 -14.58563 -14.14601 -13.98195 -13.72901 -13.64241 -13.19382 -12.77393 -12.61609 -12.55590 -12.25192 -11.72278 -11.63362 -11.62722 -11.43259 -11.38240 -11.32258 -10.95133 -10.89329 -10.68892 -10.59095 -10.24120 -9.89141 -9.76761 -9.62636 -9.50246 -9.34425 -8.88799 -8.16087 -6.97718 -5.87918 -3.21724 0.49570 0.92531 2.76362 3.20190 3.32489 3.37873 3.38770 3.64601 3.84732 4.01891 4.22445 4.35831 4.56204 4.77451 5.02801 5.04012 5.07082 5.11900 5.33460 5.38090 5.45305 5.57988 5.58767 5.63730 5.76811 5.83763 5.92980 6.02169 6.04674 6.09407 6.16038 6.16519 6.29681 6.37618 6.43126 6.62783 6.79429 6.85062 7.07996 7.19533 7.44250 7.74674 7.86621 7.90837 8.30679 8.93347 9.59219 10.46696 11.27959 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.004192 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.419323 B = 6678.069325 C = 7280.187366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.132 4.132 4 C 0.230 3.770 5 N -0.519 5.519 6 C 0.305 3.695 7 N -0.525 5.525 8 C 0.186 3.814 9 C -0.226 4.226 10 C 0.564 3.436 11 O -0.537 6.537 12 N -0.566 5.566 13 C 0.068 3.932 14 C 0.087 3.913 15 C 0.154 3.846 16 N -0.608 5.608 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.001 4.001 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.107 3.893 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.177 0.823 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.255 0.745 42 H 0.046 0.954 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 14.634 4.417 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.190 4.190 4 C 0.083 3.917 5 N -0.232 5.232 6 C 0.018 3.982 7 N -0.238 5.238 8 C 0.020 3.980 9 C -0.233 4.233 10 C 0.350 3.650 11 O -0.416 6.416 12 N -0.296 5.296 13 C -0.074 4.074 14 C -0.018 4.018 15 C 0.028 3.972 16 N -0.335 5.335 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.199 4.199 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.020 4.020 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.215 0.785 34 H 0.194 0.806 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.316 15.006 5.027 16.694 hybrid contribution 0.033 -1.601 -0.491 1.675 sum -5.282 13.404 4.536 15.105 Atomic orbital electron populations 1.21783 0.93299 1.02039 1.02603 1.20435 0.96635 0.97155 0.93679 1.21681 1.01327 0.93787 1.02212 1.21787 0.87605 0.88438 0.93849 1.68250 1.25193 1.31221 0.98550 1.25141 0.88224 0.87264 0.97564 1.68474 1.13235 1.13595 1.28523 1.23658 0.92732 0.95392 0.86242 1.21674 1.04328 1.00612 0.96696 1.17828 0.78700 0.82607 0.85882 1.90735 1.48166 1.54832 1.47844 1.47361 1.57806 1.05293 1.19098 1.22169 0.96842 0.95611 0.92785 1.23009 0.97317 0.97254 0.84201 1.22644 0.89216 0.84183 1.01191 1.46189 1.12553 1.12255 1.62543 1.18946 0.97766 0.89012 1.29959 0.90315 1.24752 0.96118 0.98202 1.00805 1.69792 1.09484 1.34782 1.42308 0.86260 0.77978 0.83848 0.78012 1.21203 1.21529 1.21029 1.23006 0.96970 0.86880 0.95176 0.91584 0.91769 0.92906 0.87460 0.91801 0.92037 0.92468 0.78517 0.80638 0.92699 0.93596 0.85735 0.88523 0.94261 0.90199 0.93449 0.93532 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.08 37.16 0.34 -1.16 16 2 C -0.06 -0.76 2.88 -91.78 -0.26 -1.02 16 3 C -0.13 -1.47 9.14 37.15 0.34 -1.13 16 4 C 0.23 3.17 5.51 -81.82 -0.45 2.72 16 5 N -0.52 -6.61 10.01 -10.48 -0.10 -6.71 16 6 C 0.31 3.54 12.27 -92.02 -1.13 2.41 16 7 N -0.52 -6.91 10.42 -14.24 -0.15 -7.06 16 8 C 0.19 2.56 9.37 -16.77 -0.16 2.40 16 9 C -0.23 -3.33 4.80 -104.69 -0.50 -3.83 16 10 C 0.56 9.41 6.61 -12.33 -0.08 9.32 16 11 O -0.54 -9.92 14.54 5.32 0.08 -9.85 16 12 N -0.57 -9.79 3.09 -176.87 -0.55 -10.34 16 13 C 0.07 1.17 8.12 59.85 0.49 1.66 16 14 C 0.09 1.61 4.50 -70.14 -0.32 1.29 16 15 C 0.15 3.34 6.77 -2.97 -0.02 3.32 16 16 N -0.61 -14.12 2.27 -178.09 -0.40 -14.52 16 17 C -0.23 -5.89 9.70 -15.06 -0.15 -6.03 16 18 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 20 N -0.92 -25.13 11.38 55.49 0.63 -24.50 16 21 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.11 2.07 8.38 -2.98 -0.02 2.04 16 26 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.11 1.56 5.42 -51.92 -0.28 1.27 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.20 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.18 2.27 6.52 -52.49 -0.34 1.93 16 35 H 0.05 0.92 6.90 -51.93 -0.36 0.56 16 36 H 0.05 0.70 6.83 -51.93 -0.35 0.34 16 37 H 0.12 2.56 5.14 -51.93 -0.27 2.29 16 38 H 0.10 1.73 7.26 -51.93 -0.38 1.36 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.90 6.90 -51.93 -0.36 1.54 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -29.01 347.52 -8.41 -37.42 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.11 Total: 2.59 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -2.03 Total: 11.85 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.57 Total: -63.13 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.01 -8.41 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044304221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.672 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds