Wall clock time and date at job start Fri Apr 10 2020 17:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 C 1.50696 * 109.47368 * 120.00459 * 2 1 3 5 5 N 1.32157 * 120.53598 * 303.64206 * 4 2 1 6 6 C 1.31860 * 120.96499 * 180.31244 * 5 4 2 7 7 N 1.31882 * 122.09913 * 359.66055 * 6 5 4 8 8 C 1.32135 * 120.96363 * 0.02562 * 7 6 5 9 9 C 1.39932 * 120.53788 * 123.33901 * 4 2 1 10 10 C 1.47837 * 120.94107 * 359.97438 * 9 4 2 11 11 O 1.21547 * 119.99868 * 46.30646 * 10 9 4 12 12 N 1.34774 * 119.99555 * 226.30786 * 10 9 4 13 13 C 1.46497 * 120.00590 * 5.46655 * 12 10 9 14 14 C 1.46497 * 119.99474 * 185.46174 * 12 10 9 15 15 C 1.53949 * 113.84152 * 141.35365 * 14 12 10 16 16 N 1.47585 * 86.11449 * 90.74956 * 15 14 12 17 17 C 1.36939 * 134.48767 * 204.63952 * 16 15 14 18 18 H 1.08003 * 119.99348 * 180.02562 * 17 16 15 19 19 C 1.38803 * 120.00449 * 0.02562 * 17 16 15 20 20 N 1.31625 * 120.00124 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 59.99881 * 21 19 17 23 23 H 1.48504 * 109.47555 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47323 * 300.00223 * 21 19 17 25 25 C 1.47575 * 91.01276 * 24.64546 * 16 15 14 26 26 H 1.09001 * 109.47016 * 299.99871 * 1 2 3 27 27 H 1.09004 * 109.47600 * 59.99789 * 1 2 3 28 28 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46970 * 240.00686 * 2 1 3 30 30 H 1.09008 * 109.47293 * 300.00238 * 3 2 1 31 31 H 1.09001 * 109.46970 * 60.00100 * 3 2 1 32 32 H 1.09001 * 109.47466 * 180.02562 * 3 2 1 33 33 H 1.08000 * 118.95011 * 179.67889 * 6 5 4 34 34 H 1.08001 * 120.53699 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46677 * 274.48869 * 13 12 10 36 36 H 1.08999 * 109.46831 * 34.48306 * 13 12 10 37 37 H 1.09001 * 109.47197 * 154.48574 * 13 12 10 38 38 H 1.08998 * 112.94991 * 9.66977 * 14 12 10 39 39 H 1.08998 * 113.77246 * 205.05350 * 15 14 12 40 40 H 1.08998 * 113.76681 * 336.45226 * 15 14 12 41 41 H 0.96992 * 119.99899 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.76382 * 221.05503 * 25 16 15 43 43 H 1.09004 * 113.77438 * 89.66113 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.6617 -0.3115 2.4345 6 6 2.1009 -0.9232 3.5170 7 7 2.9179 -1.9566 3.4552 8 6 3.3343 -2.4255 2.2921 9 6 2.8939 -1.8072 1.1161 10 6 3.3312 -2.2955 -0.2090 11 8 3.7173 -1.5074 -1.0500 12 7 3.3015 -3.6145 -0.4845 13 6 2.7251 -4.5520 0.4824 14 6 3.8457 -4.1105 -1.7509 15 6 4.6019 -5.4454 -1.6229 16 7 3.3045 -6.0917 -1.9009 17 6 2.7635 -7.3179 -1.6200 18 1 1.7607 -7.5529 -1.9450 19 6 3.5039 -8.2588 -0.9177 20 7 4.7262 -7.9725 -0.5220 21 14 2.7657 -9.9312 -0.5340 22 1 2.4184 -10.6218 -1.8020 23 1 3.7516 -10.7464 0.2202 24 1 1.5397 -9.7550 0.2854 25 6 2.8245 -4.8857 -2.6031 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.7812 -0.5666 4.4850 34 1 4.0037 -3.2719 2.2496 35 1 3.4848 -4.8357 1.2107 36 1 1.8893 -4.0765 0.9957 37 1 2.3723 -5.4414 -0.0398 38 1 4.3921 -3.3483 -2.3064 39 1 5.3477 -5.6043 -2.4017 40 1 4.9836 -5.6397 -0.6206 41 1 5.2434 -8.6299 -0.0309 42 1 1.7872 -4.6331 -2.3834 43 1 3.0482 -4.8801 -3.6700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044304221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:21 Heat of formation + Delta-G solvation = 61.638891 kcal Electronic energy + Delta-G solvation = -25738.735381 eV Core-core repulsion = 22206.892983 eV Total energy + Delta-G solvation = -3531.842398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56093 -41.01759 -39.25151 -37.14655 -35.72893 -34.30439 -33.83975 -32.56848 -29.78893 -28.06648 -27.82873 -26.56893 -26.53224 -25.96463 -24.67456 -22.19120 -21.82590 -20.01430 -19.15284 -18.75021 -18.26354 -17.71866 -17.34351 -16.80815 -16.39498 -15.83215 -15.78841 -15.64538 -15.30364 -15.05273 -14.64502 -14.52249 -14.20157 -14.07901 -13.95092 -13.21080 -13.15529 -13.05246 -13.02187 -12.77764 -12.71187 -12.51981 -12.46621 -12.30495 -12.03810 -11.89199 -11.64012 -11.58118 -11.46483 -11.05841 -10.78519 -10.63167 -10.37156 -9.63017 -8.86130 -7.86742 -5.20217 -0.55474 -0.12211 1.47140 1.49737 1.50756 1.56716 1.85099 2.49061 2.61252 2.88074 3.06309 3.19123 3.25926 3.36174 3.43923 3.73756 3.84917 4.06059 4.12247 4.16275 4.25077 4.40300 4.42300 4.52679 4.62142 4.67711 4.79085 4.79831 4.87532 4.89895 4.93291 5.03636 5.07420 5.19221 5.24505 5.29913 5.30124 5.38129 5.49870 5.65613 5.76765 5.93165 6.36177 6.90632 6.94640 6.94718 7.63549 8.56801 9.28559 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.004192 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.419323 B = 6678.069325 C = 7280.187366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.126 4.126 4 C 0.230 3.770 5 N -0.520 5.520 6 C 0.312 3.688 7 N -0.535 5.535 8 C 0.189 3.811 9 C -0.245 4.245 10 C 0.571 3.429 11 O -0.555 6.555 12 N -0.570 5.570 13 C 0.083 3.917 14 C 0.107 3.893 15 C 0.154 3.846 16 N -0.626 5.626 17 C -0.230 4.230 18 H 0.081 0.919 19 C -0.051 4.051 20 N -0.945 5.945 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.276 1.276 25 C 0.111 3.889 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.238 0.762 34 H 0.178 0.822 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.248 0.752 42 H 0.053 0.947 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 16.002 5.104 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.184 4.184 4 C 0.083 3.917 5 N -0.234 5.234 6 C 0.026 3.974 7 N -0.248 5.248 8 C 0.022 3.978 9 C -0.253 4.253 10 C 0.358 3.642 11 O -0.435 6.435 12 N -0.299 5.299 13 C -0.059 4.059 14 C 0.002 3.998 15 C 0.028 3.972 16 N -0.354 5.354 17 C -0.358 4.358 18 H 0.099 0.901 19 C -0.245 4.245 20 N -0.593 5.593 21 Si 0.796 3.204 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.202 1.202 25 C -0.015 4.015 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.254 0.746 34 H 0.195 0.805 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.851 16.401 5.709 18.668 hybrid contribution 0.473 -1.932 -0.684 2.103 sum -6.378 14.469 5.025 16.591 Atomic orbital electron populations 1.21744 0.91783 1.01815 1.03703 1.20464 0.97834 0.97568 0.92321 1.21645 1.00322 0.93022 1.03412 1.22025 0.87025 0.87906 0.94778 1.68360 1.25358 1.31289 0.98365 1.25975 0.86625 0.86062 0.98737 1.68563 1.13935 1.14384 1.27951 1.23709 0.92482 0.95307 0.86289 1.21511 1.06141 1.01927 0.95706 1.18020 0.77834 0.81876 0.86426 1.90720 1.48898 1.55122 1.48785 1.47349 1.58074 1.05755 1.18745 1.21947 0.97292 0.94459 0.92232 1.22696 0.96336 0.95982 0.84750 1.22531 0.88965 0.86162 0.99509 1.46369 1.13316 1.12381 1.63304 1.19219 0.97878 0.89783 1.28960 0.90139 1.25395 0.96608 1.01116 1.01427 1.69956 1.10593 1.35283 1.43481 0.85333 0.77215 0.80230 0.77600 1.21064 1.22386 1.20168 1.23112 0.97478 0.85073 0.95792 0.91037 0.90110 0.93759 0.89538 0.90127 0.91305 0.93948 0.74637 0.80477 0.92836 0.91741 0.88846 0.87487 0.95070 0.92625 0.94280 0.92847 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.08 71.98 0.65 -1.93 16 2 C -0.06 -1.49 2.88 -11.54 -0.03 -1.52 16 3 C -0.13 -2.58 9.14 71.98 0.66 -1.92 16 4 C 0.23 5.97 5.51 42.92 0.24 6.21 16 5 N -0.52 -12.01 10.01 -187.06 -1.87 -13.88 16 6 C 0.31 6.36 12.27 180.84 2.22 8.58 16 7 N -0.53 -13.04 10.42 -198.97 -2.07 -15.11 16 8 C 0.19 4.99 9.37 85.07 0.80 5.79 16 9 C -0.25 -7.00 4.80 -19.91 -0.10 -7.09 16 10 C 0.57 18.75 6.61 86.78 0.57 19.33 16 11 O -0.56 -20.27 14.54 -3.86 -0.06 -20.33 16 12 N -0.57 -19.55 3.09 -831.76 -2.57 -22.13 16 13 C 0.08 2.84 8.12 127.77 1.04 3.88 16 14 C 0.11 3.95 4.50 46.75 0.21 4.16 16 15 C 0.15 6.84 6.77 86.48 0.59 7.43 16 16 N -0.63 -29.21 2.27 -717.34 -1.63 -30.84 16 17 C -0.23 -11.85 9.70 84.03 0.81 -11.03 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.05 -2.71 5.50 84.86 0.47 -2.24 16 20 N -0.94 -52.88 11.38 21.65 0.25 -52.63 16 21 Si 0.97 43.23 29.55 68.60 2.03 45.25 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.11 4.23 8.38 86.48 0.72 4.96 16 26 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 2.44 5.42 -2.38 -0.01 2.43 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.24 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.18 4.51 6.52 -2.91 -0.02 4.50 16 35 H 0.05 1.82 6.90 -2.39 -0.02 1.80 16 36 H 0.06 1.92 6.83 -2.39 -0.02 1.91 16 37 H 0.09 3.86 5.14 -2.39 -0.01 3.85 16 38 H 0.11 3.76 7.26 -2.39 -0.02 3.75 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 2.73 6.90 -2.39 -0.02 2.72 16 41 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -61.73 347.52 3.94 -57.79 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.02 Total: 17.29 kcal Atomic # 6 Polarization: 25.74 SS G_CDS: 8.85 Total: 34.59 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -7.90 Total: -134.59 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -61.73 3.94 -57.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044304221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.427 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds