Wall clock time and date at job start Fri Apr 10 2020 17:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38767 * 119.90316 * 2 1 4 4 N 1.31774 * 120.12297 * 179.97438 * 3 2 1 5 5 C 1.33025 * 119.92722 * 0.02562 * 4 3 2 6 6 C 1.48145 * 120.09727 * 180.02562 * 5 4 3 7 7 O 1.21524 * 120.00086 * 188.52194 * 6 5 4 8 8 N 1.34773 * 120.00133 * 8.51256 * 6 5 4 9 9 C 1.46926 * 120.62657 * 10.46869 * 8 6 5 10 10 C 1.53195 * 108.77483 * 126.36779 * 9 8 6 11 11 C 1.53035 * 109.31469 * 54.63014 * 10 9 8 12 12 H 1.09004 * 109.46081 * 178.61027 * 11 10 9 13 13 N 1.46507 * 109.45738 * 58.65987 * 11 10 9 14 14 C 1.36930 * 120.00018 * 85.00077 * 13 11 10 15 15 H 1.08004 * 120.00623 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99795 * 180.02562 * 14 13 11 17 17 N 1.31617 * 119.99858 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46866 * 90.00127 * 18 16 14 20 20 H 1.48496 * 109.47318 * 209.99726 * 18 16 14 21 21 H 1.48495 * 109.47069 * 330.00267 * 18 16 14 22 22 C 1.53033 * 109.54188 * 298.63620 * 11 10 9 23 23 C 1.46924 * 120.63358 * 190.18440 * 8 6 5 24 24 H 1.08996 * 109.58560 * 113.85013 * 23 8 6 25 25 C 1.53004 * 109.58586 * 353.42002 * 23 8 6 26 26 C 1.39403 * 119.80858 * 359.97438 * 5 4 3 27 27 N 1.32103 * 119.90197 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47789 * 270.00369 * 1 2 3 29 29 H 1.08999 * 109.46979 * 30.00981 * 1 2 3 30 30 H 1.09010 * 109.47018 * 150.00276 * 1 2 3 31 31 H 1.08004 * 119.93877 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.58577 * 246.14977 * 9 8 6 33 33 H 1.08992 * 109.59023 * 6.57983 * 9 8 6 34 34 H 1.09000 * 109.49950 * 174.58712 * 10 9 8 35 35 H 1.09006 * 109.49707 * 294.68164 * 10 9 8 36 36 H 0.96998 * 119.99173 * 264.99693 * 13 11 10 37 37 H 0.97010 * 119.99788 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.50034 * 181.31104 * 22 11 10 39 39 H 1.08997 * 109.49680 * 301.38125 * 22 11 10 40 40 H 1.09005 * 109.46540 * 64.89283 * 25 23 8 41 41 H 1.08999 * 109.46650 * 184.88713 * 25 23 8 42 42 H 1.08995 * 109.47367 * 304.89056 * 25 23 8 43 43 H 1.08000 * 120.06248 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2029 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1846 0.0577 0.0005 6 6 5.6661 0.0589 0.0017 7 8 6.2747 -0.9813 -0.1543 8 7 6.3388 1.2137 0.1755 9 6 5.6350 2.4348 0.5906 10 6 6.3248 3.0025 1.8351 11 6 7.8132 3.2039 1.5414 12 1 8.3017 3.6309 2.4173 13 7 7.9674 4.1149 0.4044 14 6 7.9582 5.4692 0.6061 15 1 7.8370 5.8660 1.6032 16 6 8.1038 6.3323 -0.4713 17 7 8.2511 5.8489 -1.6866 18 14 8.0907 8.1800 -0.1964 19 1 9.4763 8.6534 0.0512 20 1 7.5445 8.8558 -1.4006 21 1 7.2410 8.4995 0.9788 22 6 8.4556 1.8561 1.2057 23 6 7.7909 1.2741 -0.0406 24 1 8.0065 1.9117 -0.8979 25 6 8.3303 -0.1346 -0.2967 26 6 3.4867 -1.1491 0.0005 27 7 2.1656 -1.1452 0.0005 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6562 2.1368 -0.0004 32 1 5.6714 3.1690 -0.2141 33 1 4.5974 2.1970 0.8245 34 1 5.8730 3.9593 2.0970 35 1 6.2089 2.3056 2.6652 36 1 8.0759 3.7585 -0.4912 37 1 8.3531 6.4521 -2.4395 38 1 9.5203 1.9969 1.0194 39 1 8.3201 1.1702 2.0418 40 1 7.9151 -0.5187 -1.2285 41 1 9.4172 -0.0996 -0.3704 42 1 8.0428 -0.7890 0.5262 43 1 4.0249 -2.0854 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044436361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:24 Heat of formation + Delta-G solvation = 55.661656 kcal Electronic energy + Delta-G solvation = -25624.736335 eV Core-core repulsion = 22092.634744 eV Total energy + Delta-G solvation = -3532.101590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58181 -39.94138 -37.44199 -35.14987 -34.10823 -33.12022 -32.19444 -31.88624 -29.18283 -28.53849 -26.89038 -24.90114 -24.41475 -23.66552 -23.17833 -21.95477 -20.37172 -18.76489 -17.91720 -17.21800 -16.73071 -16.28027 -15.77848 -15.55029 -15.21946 -14.97084 -14.41509 -14.02209 -13.89452 -13.67129 -13.25737 -13.19519 -12.96748 -12.88812 -12.72284 -12.57618 -12.11847 -12.06741 -11.85370 -11.44775 -11.26743 -11.02330 -10.87418 -10.76738 -10.55525 -10.24670 -10.19454 -9.91924 -9.61788 -9.42792 -9.41129 -8.95160 -8.65933 -8.11367 -6.95862 -5.77190 -3.05681 0.22697 0.82768 2.71249 3.08198 3.42395 3.47883 3.49329 3.59990 3.77783 3.90141 4.17508 4.52869 4.58801 4.76051 4.84290 5.17535 5.22733 5.30663 5.31669 5.35725 5.45711 5.58799 5.65104 5.65950 5.84402 5.86286 5.95605 6.04787 6.08246 6.21681 6.33342 6.44381 6.51263 6.59813 6.62206 6.78603 6.83022 6.90467 6.97997 7.11903 7.43667 7.69821 7.73207 8.28804 8.41245 9.52623 10.09912 10.45016 11.45365 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.004298 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.184568 B = 6513.578211 C = 7729.065692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.094 3.906 3 C 0.045 3.955 4 N -0.392 5.392 5 C 0.026 3.974 6 C 0.568 3.432 7 O -0.536 6.536 8 N -0.572 5.572 9 C 0.091 3.909 10 C -0.150 4.150 11 C 0.172 3.828 12 H 0.049 0.951 13 N -0.721 5.721 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.132 4.132 23 C 0.142 3.858 24 H 0.083 0.917 25 C -0.137 4.137 26 C 0.112 3.888 27 N -0.444 5.444 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.176 0.824 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 -12.429 4.671 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.047 4.047 3 C -0.117 4.117 4 N -0.109 5.109 5 C -0.114 4.114 6 C 0.354 3.646 7 O -0.414 6.414 8 N -0.302 5.302 9 C -0.031 4.031 10 C -0.191 4.191 11 C 0.062 3.938 12 H 0.067 0.933 13 N -0.364 5.364 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.171 4.171 23 C 0.040 3.960 24 H 0.101 0.899 25 C -0.194 4.194 26 C -0.048 4.048 27 N -0.159 5.159 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.193 0.807 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.365 -12.786 4.635 18.381 hybrid contribution 0.041 1.275 -0.204 1.292 sum -12.324 -11.511 4.430 17.435 Atomic orbital electron populations 1.20749 0.87387 1.04248 1.03727 1.22627 0.98736 0.89783 0.93556 1.23924 0.90810 0.99542 0.97461 1.68723 1.08297 1.27487 1.06358 1.22487 0.96558 0.90813 1.01543 1.17695 0.84604 0.84149 0.78185 1.90825 1.66807 1.32094 1.51695 1.48066 1.08449 1.09631 1.64012 1.22692 0.97519 0.84968 0.97913 1.22551 1.00214 1.00119 0.96261 1.20216 0.92238 0.89123 0.92243 0.93281 1.42491 1.87130 1.02192 1.04554 1.19232 1.41760 0.82577 0.93291 0.91243 1.24710 1.02974 0.97774 0.95356 1.69657 1.56807 1.33603 0.98028 0.86229 0.77546 0.85859 0.76770 1.21832 1.21879 1.20831 1.22159 1.00335 0.97561 0.97073 1.21275 0.78052 0.97978 0.98693 0.89936 1.22242 0.98611 0.94857 1.03705 1.23764 0.89822 0.99263 0.91962 1.68449 1.08353 1.29030 1.10099 0.89628 0.89830 0.89968 0.80656 0.89997 0.86273 0.90923 0.93797 0.78184 0.93561 0.90655 0.92090 0.91897 0.93769 0.90734 0.80127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.19 36.01 0.37 -0.24 16 2 C 0.09 0.92 6.79 -82.28 -0.56 0.36 16 3 C 0.04 0.46 10.88 -17.38 -0.19 0.27 16 4 N -0.39 -5.32 6.37 -9.62 -0.06 -5.39 16 5 C 0.03 0.37 6.56 -82.85 -0.54 -0.17 16 6 C 0.57 9.29 7.55 -12.19 -0.09 9.20 16 7 O -0.54 -9.21 11.83 5.34 0.06 -9.14 16 8 N -0.57 -9.72 2.98 -166.47 -0.50 -10.22 16 9 C 0.09 1.57 5.57 -3.71 -0.02 1.55 16 10 C -0.15 -2.64 5.78 -26.61 -0.15 -2.79 16 11 C 0.17 3.34 3.10 -67.89 -0.21 3.13 16 12 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 13 N -0.72 -17.27 4.31 -53.38 -0.23 -17.50 16 14 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 18 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.13 -2.25 5.05 -26.83 -0.14 -2.38 16 23 C 0.14 2.47 3.18 -67.82 -0.22 2.25 16 24 H 0.08 1.61 6.64 -51.93 -0.34 1.27 16 25 C -0.14 -2.18 7.59 37.16 0.28 -1.89 16 26 C 0.11 1.41 10.77 -17.00 -0.18 1.22 16 27 N -0.44 -5.24 10.41 -8.95 -0.09 -5.33 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.18 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.08 1.68 7.74 -51.93 -0.40 1.28 16 33 H 0.12 1.90 4.20 -75.16 -0.32 1.58 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.38 9.82 6.07 -40.82 -0.25 9.57 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.05 6.98 -51.93 -0.36 0.69 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 43 H 0.18 2.05 7.67 -52.49 -0.40 1.64 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -31.01 341.44 -8.05 -39.06 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.18 Total: 9.66 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.90 Total: 3.58 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.16 Total: -65.27 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.06 Total: -9.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.01 -8.05 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044436361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.720 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds