Wall clock time and date at job start Fri Apr 10 2020 17:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 120.53558 * 2 1 4 4 C 1.31858 * 120.96564 * 180.31239 * 3 2 1 5 5 N 1.31880 * 122.09303 * 359.65767 * 4 3 2 6 6 C 1.32128 * 120.97277 * 0.02562 * 5 4 3 7 7 C 1.39927 * 120.53975 * 179.69341 * 2 1 3 8 8 C 1.47832 * 120.93743 * 359.97438 * 7 2 1 9 9 O 1.21557 * 119.99745 * 54.18636 * 8 7 2 10 10 N 1.34775 * 120.00490 * 234.17981 * 8 7 2 11 11 C 1.46924 * 120.62713 * 355.94984 * 10 8 7 12 12 C 1.53190 * 108.77792 * 126.41307 * 11 10 8 13 13 C 1.53043 * 109.31127 * 54.63076 * 12 11 10 14 14 H 1.09009 * 109.45966 * 58.64750 * 13 12 11 15 15 N 1.46503 * 109.46093 * 178.61689 * 13 12 11 16 16 C 1.36940 * 119.99729 * 275.00227 * 15 13 12 17 17 H 1.08002 * 120.00367 * 359.72333 * 16 15 13 18 18 C 1.38810 * 119.99688 * 179.72543 * 16 15 13 19 19 N 1.31614 * 120.00057 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00171 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46966 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.46989 * 210.00352 * 20 18 16 23 23 H 1.48500 * 109.46732 * 330.00122 * 20 18 16 24 24 C 1.53040 * 109.54040 * 298.63868 * 13 12 11 25 25 C 1.46928 * 120.63449 * 175.97288 * 10 8 7 26 26 H 1.09007 * 109.58281 * 353.37566 * 25 10 8 27 27 C 1.53002 * 109.58591 * 113.79740 * 25 10 8 28 28 H 1.08999 * 109.47169 * 274.66987 * 1 2 3 29 29 H 1.09000 * 109.47185 * 34.67505 * 1 2 3 30 30 H 1.09009 * 109.47312 * 154.67290 * 1 2 3 31 31 H 1.08001 * 118.94952 * 179.67715 * 4 3 2 32 32 H 1.07999 * 120.54164 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.59078 * 6.62559 * 11 10 8 34 34 H 1.09009 * 109.70351 * 246.27116 * 11 10 8 35 35 H 1.08993 * 109.49713 * 294.68731 * 12 11 10 36 36 H 1.08999 * 109.50344 * 174.58360 * 12 11 10 37 37 H 0.96997 * 119.99813 * 94.72486 * 15 13 12 38 38 H 0.97001 * 120.00122 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49597 * 181.31610 * 24 13 12 40 40 H 1.08993 * 109.49833 * 301.41346 * 24 13 12 41 41 H 1.08998 * 109.47029 * 60.00685 * 27 25 10 42 42 H 1.08999 * 109.46663 * 180.02562 * 27 25 10 43 43 H 1.08994 * 109.47040 * 299.99895 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1483 -0.0062 5 7 4.2061 0.0363 -0.0059 6 6 3.6165 -1.1461 0.0001 7 6 2.2180 -1.2051 0.0064 8 6 1.5121 -2.5040 0.0140 9 8 0.6803 -2.7486 -0.8381 10 7 1.7908 -3.4171 0.9653 11 6 2.8551 -3.1728 1.9483 12 6 2.2761 -3.3474 3.3557 13 6 1.6225 -4.7268 3.4666 14 1 2.3640 -5.4979 3.2574 15 7 1.0965 -4.9102 4.8216 16 6 1.9177 -5.3641 5.8191 17 1 2.9518 -5.5910 5.6060 18 6 1.4208 -5.5324 7.1043 19 7 2.2098 -5.9691 8.0629 20 14 -0.3678 -5.1393 7.4732 21 1 -1.1954 -6.3539 7.2613 22 1 -0.4957 -4.6928 8.8837 23 1 -0.8339 -4.0585 6.5676 24 6 0.4776 -4.8334 2.4566 25 6 1.0364 -4.6757 1.0390 26 1 0.2149 -4.6517 0.3229 27 6 1.9646 -5.8494 0.7199 28 1 -0.3633 0.0837 1.0242 29 1 -0.3633 0.8451 -0.5847 30 1 -0.3634 -0.9290 -0.4397 31 1 4.0127 2.0972 -0.0113 32 1 4.2040 -2.0523 -0.0001 33 1 3.2337 -2.1573 1.8323 34 1 3.6664 -3.8848 1.7960 35 1 1.5293 -2.5752 3.5402 36 1 3.0761 -3.2638 4.0913 37 1 0.1677 -4.7064 5.0131 38 1 1.8627 -6.0864 8.9611 39 1 -0.0023 -5.8074 2.5522 40 1 -0.2521 -4.0472 2.6495 41 1 2.7810 -5.8737 1.4417 42 1 1.4030 -6.7820 0.7746 43 1 2.3708 -5.7288 -0.2843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044480303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:33 Heat of formation + Delta-G solvation = 30.249748 kcal Electronic energy + Delta-G solvation = -25558.366335 eV Core-core repulsion = 22025.162801 eV Total energy + Delta-G solvation = -3533.203533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68093 -40.07620 -37.85844 -34.98673 -34.58911 -33.55529 -32.04363 -31.88103 -29.98100 -28.88848 -27.58721 -25.66278 -24.20889 -23.54217 -22.83352 -21.90908 -20.80811 -18.83697 -18.27940 -17.71488 -17.23101 -17.12554 -16.28135 -15.39218 -15.13129 -14.88507 -14.36094 -14.17251 -14.09648 -13.85203 -13.59153 -13.43717 -13.27733 -13.02199 -12.92152 -12.63889 -12.45295 -12.10122 -12.01749 -11.84241 -11.53625 -11.12956 -11.03854 -10.97870 -10.84298 -10.63118 -10.29150 -10.02957 -9.87392 -9.70412 -9.65834 -9.61676 -8.99817 -8.74037 -7.36431 -5.84517 -3.20891 0.27973 0.68865 2.37217 2.76906 3.31971 3.34948 3.38841 3.40575 3.69698 3.78304 4.02938 4.16925 4.52332 4.62524 4.79777 4.92721 4.94605 5.01610 5.10680 5.15511 5.27908 5.31095 5.41090 5.46298 5.49274 5.56182 5.62491 5.69157 5.73678 5.88116 5.94874 6.01820 6.07952 6.14690 6.24893 6.27738 6.41052 6.56277 6.68760 6.83511 7.23136 7.69042 7.90245 7.90451 8.34374 9.12259 9.85071 10.04284 11.33585 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.003963 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.840842 B = 7064.175057 C = 7432.841099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.225 3.775 3 N -0.522 5.522 4 C 0.311 3.689 5 N -0.524 5.524 6 C 0.184 3.816 7 C -0.232 4.232 8 C 0.572 3.428 9 O -0.534 6.534 10 N -0.590 5.590 11 C 0.099 3.901 12 C -0.151 4.151 13 C 0.183 3.817 14 H 0.062 0.938 15 N -0.748 5.748 16 C -0.247 4.247 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.138 4.138 25 C 0.143 3.857 26 H 0.099 0.901 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 9.506 -18.083 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 N -0.236 5.236 4 C 0.024 3.976 5 N -0.238 5.238 6 C 0.017 3.983 7 C -0.240 4.240 8 C 0.358 3.642 9 O -0.412 6.412 10 N -0.322 5.322 11 C -0.024 4.024 12 C -0.192 4.192 13 C 0.074 3.926 14 H 0.080 0.920 15 N -0.389 5.389 16 C -0.376 4.376 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.177 4.177 25 C 0.040 3.960 26 H 0.117 0.883 27 C -0.220 4.220 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.218 0.782 32 H 0.191 0.809 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.524 10.134 -18.357 20.975 hybrid contribution -1.431 -0.347 0.642 1.606 sum -0.907 9.788 -17.715 20.260 Atomic orbital electron populations 1.21065 0.87159 1.05704 1.04201 1.21817 0.97850 0.86533 0.85932 1.68372 1.10355 1.29561 1.15347 1.25185 0.86704 0.97288 0.88385 1.68467 1.41336 0.98890 1.15106 1.23482 0.90513 0.96826 0.87450 1.21590 0.96693 0.96263 1.09425 1.17794 0.82156 0.82749 0.81457 1.90761 1.34410 1.78653 1.37379 1.48218 1.36094 1.18222 1.29617 1.22060 0.89653 1.01338 0.89332 1.22650 1.01627 1.01075 0.93838 1.20179 0.93774 0.94003 0.84684 0.92017 1.42798 1.10285 1.80296 1.05547 1.19050 0.94537 1.36231 0.87815 0.89157 1.24665 0.97321 1.01109 0.95795 1.69693 1.34742 1.51957 1.01563 0.86576 0.86505 0.78196 0.77366 1.21006 1.21737 1.20419 1.22273 0.99262 1.02748 0.93423 1.21250 0.94533 0.82071 0.98112 0.88308 1.22157 1.00554 0.97636 1.01666 0.89295 0.89444 0.88163 0.78238 0.80888 0.90739 0.90538 0.92365 0.90005 0.80651 0.92988 0.90151 0.91882 0.91390 0.91046 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.93 36.01 0.36 -0.92 16 2 C 0.23 2.66 6.86 -81.82 -0.56 2.10 16 3 N -0.52 -5.97 10.36 -10.48 -0.11 -6.08 16 4 C 0.31 3.10 12.27 -92.03 -1.13 1.97 16 5 N -0.52 -5.65 10.42 -14.24 -0.15 -5.80 16 6 C 0.18 1.93 8.76 -16.78 -0.15 1.78 16 7 C -0.23 -2.74 4.88 -104.69 -0.51 -3.25 16 8 C 0.57 7.42 6.65 -12.34 -0.08 7.34 16 9 O -0.53 -8.16 14.64 5.32 0.08 -8.08 16 10 N -0.59 -7.21 2.68 -166.32 -0.45 -7.66 16 11 C 0.10 1.17 5.18 -3.71 -0.02 1.15 16 12 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 13 C 0.18 3.12 2.52 -67.89 -0.17 2.95 16 14 H 0.06 1.08 6.43 -51.92 -0.33 0.74 16 15 N -0.75 -16.49 4.92 -53.38 -0.26 -16.76 16 16 C -0.25 -6.58 10.41 -15.06 -0.16 -6.73 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 20 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 24 C -0.14 -1.97 5.02 -26.61 -0.13 -2.10 16 25 C 0.14 1.77 3.20 -67.60 -0.22 1.55 16 26 H 0.10 1.26 7.03 -51.93 -0.36 0.90 16 27 C -0.16 -1.77 9.03 37.16 0.34 -1.44 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.15 5.72 -51.92 -0.30 0.85 16 31 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.17 1.43 7.46 -52.49 -0.39 1.04 16 33 H 0.07 0.81 4.76 -51.93 -0.25 0.57 16 34 H 0.08 0.80 7.51 -51.92 -0.39 0.41 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.77 5.73 -51.93 -0.30 0.48 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -32.19 341.21 -8.32 -40.50 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.95 Total: 7.58 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.68 Total: 2.04 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.19 Total: -63.97 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.19 -8.32 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.753 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds