Wall clock time and date at job start Fri Apr 10 2020 17:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 120.53558 * 2 1 4 4 C 1.31858 * 120.96564 * 180.31239 * 3 2 1 5 5 N 1.31880 * 122.09303 * 359.65767 * 4 3 2 6 6 C 1.32128 * 120.97277 * 0.02562 * 5 4 3 7 7 C 1.39927 * 120.53975 * 179.69341 * 2 1 3 8 8 C 1.47832 * 120.93743 * 359.97438 * 7 2 1 9 9 O 1.21557 * 119.99745 * 54.18636 * 8 7 2 10 10 N 1.34775 * 120.00490 * 234.17981 * 8 7 2 11 11 C 1.46924 * 120.62713 * 355.94984 * 10 8 7 12 12 C 1.53190 * 108.77792 * 126.41307 * 11 10 8 13 13 C 1.53043 * 109.31127 * 54.63076 * 12 11 10 14 14 H 1.09009 * 109.45966 * 58.64750 * 13 12 11 15 15 N 1.46503 * 109.46093 * 178.61689 * 13 12 11 16 16 C 1.36940 * 119.99729 * 275.00227 * 15 13 12 17 17 H 1.08002 * 120.00367 * 359.72333 * 16 15 13 18 18 C 1.38810 * 119.99688 * 179.72543 * 16 15 13 19 19 N 1.31614 * 120.00057 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00171 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46966 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.46989 * 210.00352 * 20 18 16 23 23 H 1.48500 * 109.46732 * 330.00122 * 20 18 16 24 24 C 1.53040 * 109.54040 * 298.63868 * 13 12 11 25 25 C 1.46928 * 120.63449 * 175.97288 * 10 8 7 26 26 H 1.09007 * 109.58281 * 353.37566 * 25 10 8 27 27 C 1.53002 * 109.58591 * 113.79740 * 25 10 8 28 28 H 1.08999 * 109.47169 * 274.66987 * 1 2 3 29 29 H 1.09000 * 109.47185 * 34.67505 * 1 2 3 30 30 H 1.09009 * 109.47312 * 154.67290 * 1 2 3 31 31 H 1.08001 * 118.94952 * 179.67715 * 4 3 2 32 32 H 1.07999 * 120.54164 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.59078 * 6.62559 * 11 10 8 34 34 H 1.09009 * 109.70351 * 246.27116 * 11 10 8 35 35 H 1.08993 * 109.49713 * 294.68731 * 12 11 10 36 36 H 1.08999 * 109.50344 * 174.58360 * 12 11 10 37 37 H 0.96997 * 119.99813 * 94.72486 * 15 13 12 38 38 H 0.97001 * 120.00122 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49597 * 181.31610 * 24 13 12 40 40 H 1.08993 * 109.49833 * 301.41346 * 24 13 12 41 41 H 1.08998 * 109.47029 * 60.00685 * 27 25 10 42 42 H 1.08999 * 109.46663 * 180.02562 * 27 25 10 43 43 H 1.08994 * 109.47040 * 299.99895 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1483 -0.0062 5 7 4.2061 0.0363 -0.0059 6 6 3.6165 -1.1461 0.0001 7 6 2.2180 -1.2051 0.0064 8 6 1.5121 -2.5040 0.0140 9 8 0.6803 -2.7486 -0.8381 10 7 1.7908 -3.4171 0.9653 11 6 2.8551 -3.1728 1.9483 12 6 2.2761 -3.3474 3.3557 13 6 1.6225 -4.7268 3.4666 14 1 2.3640 -5.4979 3.2574 15 7 1.0965 -4.9102 4.8216 16 6 1.9177 -5.3641 5.8191 17 1 2.9518 -5.5910 5.6060 18 6 1.4208 -5.5324 7.1043 19 7 2.2098 -5.9691 8.0629 20 14 -0.3678 -5.1393 7.4732 21 1 -1.1954 -6.3539 7.2613 22 1 -0.4957 -4.6928 8.8837 23 1 -0.8339 -4.0585 6.5676 24 6 0.4776 -4.8334 2.4566 25 6 1.0364 -4.6757 1.0390 26 1 0.2149 -4.6517 0.3229 27 6 1.9646 -5.8494 0.7199 28 1 -0.3633 0.0837 1.0242 29 1 -0.3633 0.8451 -0.5847 30 1 -0.3634 -0.9290 -0.4397 31 1 4.0127 2.0972 -0.0113 32 1 4.2040 -2.0523 -0.0001 33 1 3.2337 -2.1573 1.8323 34 1 3.6664 -3.8848 1.7960 35 1 1.5293 -2.5752 3.5402 36 1 3.0761 -3.2638 4.0913 37 1 0.1677 -4.7064 5.0131 38 1 1.8627 -6.0864 8.9611 39 1 -0.0023 -5.8074 2.5522 40 1 -0.2521 -4.0472 2.6495 41 1 2.7810 -5.8737 1.4417 42 1 1.4030 -6.7820 0.7746 43 1 2.3708 -5.7288 -0.2843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044480303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:32 Heat of formation + Delta-G solvation = 9.597848 kcal Electronic energy + Delta-G solvation = -25559.261868 eV Core-core repulsion = 22025.162801 eV Total energy + Delta-G solvation = -3534.099067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55044 -41.08555 -39.04116 -36.44665 -35.52143 -34.56997 -33.77020 -32.87879 -31.57016 -29.74521 -28.72975 -26.56000 -25.70367 -24.57874 -24.00663 -23.11583 -22.05525 -20.24979 -19.32702 -19.05698 -18.36267 -17.88623 -17.36393 -16.81393 -16.29446 -15.86987 -15.85185 -15.36597 -15.22172 -14.93700 -14.86307 -14.57736 -14.33746 -14.11917 -14.09369 -13.89706 -13.47173 -13.28593 -13.08504 -12.97993 -12.83886 -12.69680 -12.44747 -12.20870 -12.04236 -11.97519 -11.79658 -11.65540 -11.16761 -11.01608 -10.92118 -10.59372 -10.44133 -9.79300 -9.30647 -8.00968 -5.33809 -0.54555 -0.13867 1.38006 1.38429 1.40255 1.47319 1.78846 2.48902 2.57143 2.92492 3.03918 3.21450 3.25985 3.31071 3.50570 3.75581 3.82169 3.91620 4.03518 4.20353 4.22959 4.27490 4.36362 4.49805 4.52294 4.53542 4.57074 4.69655 4.71667 4.75353 4.94970 5.00363 5.02788 5.04661 5.21501 5.24894 5.30835 5.46738 5.56575 5.74267 5.79780 6.22224 6.23443 6.88799 6.90603 7.09472 7.86213 8.03659 9.20425 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.003963 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.840842 B = 7064.175057 C = 7432.841099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 N -0.535 5.535 4 C 0.312 3.688 5 N -0.534 5.534 6 C 0.188 3.812 7 C -0.248 4.248 8 C 0.578 3.422 9 O -0.559 6.559 10 N -0.587 5.587 11 C 0.110 3.890 12 C -0.143 4.143 13 C 0.177 3.823 14 H 0.059 0.941 15 N -0.752 5.752 16 C -0.223 4.223 17 H 0.063 0.937 18 C -0.062 4.062 19 N -0.984 5.984 20 Si 0.949 3.051 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.256 1.256 24 C -0.129 4.129 25 C 0.148 3.852 26 H 0.099 0.901 27 C -0.157 4.157 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.195 0.805 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 10.514 -19.827 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 N -0.250 5.250 4 C 0.026 3.974 5 N -0.248 5.248 6 C 0.021 3.979 7 C -0.255 4.255 8 C 0.365 3.635 9 O -0.438 6.438 10 N -0.318 5.318 11 C -0.013 4.013 12 C -0.184 4.184 13 C 0.069 3.931 14 H 0.077 0.923 15 N -0.395 5.395 16 C -0.354 4.354 17 H 0.081 0.919 18 C -0.253 4.253 19 N -0.635 5.635 20 Si 0.777 3.223 21 H -0.205 1.205 22 H -0.227 1.227 23 H -0.181 1.181 24 C -0.167 4.167 25 C 0.045 3.955 26 H 0.117 0.883 27 C -0.215 4.215 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.250 0.750 32 H 0.212 0.788 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.195 0.805 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.141 11.167 -20.166 23.052 hybrid contribution -1.222 -0.624 1.097 1.757 sum -1.081 10.543 -19.069 21.816 Atomic orbital electron populations 1.21040 0.86626 1.05486 1.04612 1.22064 0.98512 0.86834 0.85760 1.68445 1.11083 1.29338 1.16089 1.25895 0.86437 0.98382 0.86701 1.68569 1.41418 0.99174 1.15604 1.23833 0.90153 0.97645 0.86265 1.21529 0.97279 0.95586 1.11115 1.17897 0.81646 0.82938 0.81004 1.90750 1.35549 1.79130 1.38400 1.48208 1.36046 1.18122 1.29464 1.21994 0.89628 1.02829 0.86843 1.22446 1.00690 0.99395 0.95821 1.20430 0.94901 0.94822 0.82942 0.92281 1.42853 1.09925 1.80137 1.06549 1.19030 0.93797 1.33867 0.88727 0.91937 1.25412 1.01698 1.02357 0.95860 1.69866 1.36939 1.54717 1.01931 0.85503 0.81362 0.78621 0.76814 1.20503 1.22735 1.18076 1.22160 0.98007 1.02941 0.93636 1.21203 0.94992 0.82734 0.96587 0.88296 1.22119 1.00115 0.97266 1.02020 0.88737 0.88318 0.89421 0.75045 0.78826 0.89390 0.88579 0.93193 0.91938 0.80467 0.93497 0.89733 0.92184 0.91833 0.90221 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.93 71.24 0.71 -1.64 16 2 C 0.21 4.74 6.86 42.92 0.29 5.03 16 3 N -0.53 -11.22 10.36 -187.06 -1.94 -13.15 16 4 C 0.31 5.45 12.27 180.84 2.22 7.67 16 5 N -0.53 -10.20 10.42 -198.97 -2.07 -12.27 16 6 C 0.19 3.49 8.76 85.07 0.75 4.23 16 7 C -0.25 -5.39 4.88 -19.91 -0.10 -5.49 16 8 C 0.58 13.97 6.65 86.78 0.58 14.55 16 9 O -0.56 -16.33 14.64 -3.89 -0.06 -16.38 16 10 N -0.59 -13.14 2.68 -798.41 -2.14 -15.28 16 11 C 0.11 2.35 5.18 86.36 0.45 2.79 16 12 C -0.14 -4.21 5.66 30.67 0.17 -4.03 16 13 C 0.18 5.82 2.52 45.02 0.11 5.94 16 14 H 0.06 2.00 6.43 -2.38 -0.02 1.99 16 15 N -0.75 -32.58 4.92 -322.79 -1.59 -34.16 16 16 C -0.22 -12.00 10.41 84.03 0.87 -11.13 16 17 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 18 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 19 N -0.98 -61.58 13.97 21.65 0.30 -61.27 16 20 Si 0.95 44.47 27.74 68.60 1.90 46.38 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.26 -10.90 6.52 99.48 0.65 -10.25 16 24 C -0.13 -3.43 5.02 30.67 0.15 -3.28 16 25 C 0.15 3.35 3.20 44.97 0.14 3.49 16 26 H 0.10 2.33 7.03 -2.38 -0.02 2.32 16 27 C -0.16 -3.07 9.03 71.98 0.65 -2.42 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.95 5.72 -2.38 -0.01 1.93 16 31 H 0.23 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.20 2.62 7.46 -2.91 -0.02 2.60 16 33 H 0.09 1.70 4.76 -2.39 -0.01 1.69 16 34 H 0.10 1.74 7.51 -2.38 -0.02 1.72 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.36 15.42 5.66 -92.71 -0.53 14.89 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.30 5.73 -2.39 -0.01 1.29 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.72 341.21 2.33 -67.39 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.45 Total: 26.10 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 7.47 Total: 12.66 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -7.44 Total: -136.15 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.06 Total: -16.38 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.38 kcal Total: -69.72 2.33 -67.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.991 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds