Wall clock time and date at job start Fri Apr 10 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32152 * 120.53870 * 2 1 4 4 C 1.31856 * 120.96776 * 180.26298 * 3 2 1 5 5 N 1.31880 * 122.09464 * 359.75107 * 4 3 2 6 6 C 1.32124 * 120.96804 * 359.97159 * 5 4 3 7 7 C 1.39928 * 120.53426 * 179.73428 * 2 1 3 8 8 C 1.47829 * 120.94126 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00459 * 305.86061 * 8 7 2 10 10 N 1.34780 * 119.99720 * 125.86281 * 8 7 2 11 11 C 1.46930 * 120.63302 * 354.24086 * 10 8 7 12 12 C 1.53185 * 108.76852 * 233.59988 * 11 10 8 13 13 C 1.53048 * 109.31068 * 305.34007 * 12 11 10 14 14 H 1.08996 * 109.46169 * 301.37263 * 13 12 11 15 15 N 1.46497 * 109.45924 * 181.39725 * 13 12 11 16 16 C 1.36946 * 119.99804 * 84.97816 * 15 13 12 17 17 H 1.08005 * 119.99514 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99893 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00379 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47319 * 89.99857 * 20 18 16 22 22 H 1.48499 * 109.47115 * 329.99999 * 20 18 16 23 23 H 1.48499 * 109.47423 * 210.00034 * 20 18 16 24 24 C 1.53038 * 109.52177 * 61.38916 * 13 12 11 25 25 C 1.46925 * 120.62973 * 174.22442 * 10 8 7 26 26 H 1.08991 * 109.58769 * 6.62459 * 25 10 8 27 27 C 1.53008 * 109.58357 * 246.19618 * 25 10 8 28 28 H 1.09001 * 109.47538 * 275.14682 * 1 2 3 29 29 H 1.09002 * 109.46781 * 35.14997 * 1 2 3 30 30 H 1.09008 * 109.47008 * 155.14500 * 1 2 3 31 31 H 1.08002 * 118.95237 * 179.72394 * 4 3 2 32 32 H 1.08002 * 120.54067 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.58088 * 353.37838 * 11 10 8 34 34 H 1.08999 * 109.58746 * 113.65506 * 11 10 8 35 35 H 1.09001 * 109.48403 * 185.40331 * 12 11 10 36 36 H 1.08997 * 109.51352 * 65.29736 * 12 11 10 37 37 H 0.96999 * 120.00858 * 264.97385 * 15 13 12 38 38 H 0.96998 * 120.00088 * 0.02562 * 19 18 16 39 39 H 1.08995 * 109.50129 * 58.57991 * 24 13 12 40 40 H 1.09000 * 109.49363 * 178.67480 * 24 13 12 41 41 H 1.08993 * 109.47173 * 300.71204 * 27 25 10 42 42 H 1.09000 * 109.46795 * 60.71507 * 27 25 10 43 43 H 1.09004 * 109.46653 * 180.70901 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1481 -0.0052 5 7 4.2061 0.0361 -0.0057 6 6 3.6164 -1.1462 -0.0005 7 6 2.2180 -1.2052 0.0056 8 6 1.5120 -2.5041 0.0122 9 8 0.6803 -2.7395 0.8667 10 7 1.7907 -3.4272 -0.9294 11 6 2.6989 -3.1126 -2.0408 12 6 1.9894 -3.4277 -3.3613 13 6 1.5014 -4.8781 -3.3402 14 1 2.3507 -5.5449 -3.1910 15 7 0.8517 -5.1931 -4.6149 16 6 1.6038 -5.5991 -5.6849 17 1 2.6761 -5.6867 -5.5890 18 6 0.9882 -5.8980 -6.8924 19 7 -0.3185 -5.7918 -7.0091 20 14 2.0143 -6.4512 -8.3522 21 1 2.1418 -7.9306 -8.3354 22 1 3.3638 -5.8371 -8.2697 23 1 1.3529 -6.0256 -9.6118 24 6 0.5001 -5.0643 -2.1979 25 6 1.1924 -4.7676 -0.8639 26 1 0.4606 -4.8020 -0.0569 27 6 2.2873 -5.8062 -0.6121 28 1 -0.3634 0.0922 1.0235 29 1 -0.3633 0.8403 -0.5917 30 1 -0.3633 -0.9326 -0.4320 31 1 4.0128 2.0970 -0.0096 32 1 4.2039 -2.0525 -0.0005 33 1 2.9610 -2.0550 -2.0101 34 1 3.6028 -3.7157 -1.9559 35 1 2.6846 -3.2898 -4.1895 36 1 1.1376 -2.7591 -3.4856 37 1 -0.1112 -5.1141 -4.7011 38 1 -0.8512 -5.5042 -6.2513 39 1 -0.3375 -4.3801 -2.3332 40 1 0.1352 -6.0913 -2.1979 41 1 3.0202 -5.7642 -1.4178 42 1 2.7786 -5.5934 0.3374 43 1 1.8431 -6.8010 -0.5764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044480305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:40 Heat of formation + Delta-G solvation = 24.422749 kcal Electronic energy + Delta-G solvation = -25510.531345 eV Core-core repulsion = 21977.075134 eV Total energy + Delta-G solvation = -3533.456211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66411 -40.06321 -37.80748 -34.99773 -34.64333 -33.54332 -32.11392 -31.91903 -29.37878 -28.81385 -27.35393 -25.64581 -23.97905 -23.47369 -23.06153 -22.09105 -20.88370 -18.67137 -18.22895 -17.48577 -17.33206 -17.11727 -16.34971 -15.42378 -14.96012 -14.80122 -14.42335 -14.23528 -14.10967 -13.74673 -13.61354 -13.49796 -13.28241 -13.13318 -12.96399 -12.70362 -12.52454 -12.03740 -11.92326 -11.80116 -11.38140 -11.04101 -10.89162 -10.87246 -10.63166 -10.49306 -10.09562 -10.06348 -9.98190 -9.72449 -9.62841 -9.22864 -8.97119 -8.70611 -7.11464 -6.16042 -3.17022 0.27225 0.68191 2.39952 2.77863 3.38708 3.47509 3.51877 3.65902 3.67634 3.77550 4.02692 4.18085 4.60091 4.62274 4.82428 4.93368 5.00716 5.06748 5.12977 5.15841 5.31017 5.33161 5.42183 5.46819 5.53117 5.58427 5.65435 5.70447 5.74627 5.89225 5.99650 6.01041 6.11804 6.18491 6.27699 6.32829 6.43694 6.55470 6.72300 6.87354 7.25215 7.67887 7.74126 7.92264 8.69515 9.15651 10.02145 10.16769 11.32181 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.003708 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.571689 B = 7548.775934 C = 8006.871272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.223 3.777 3 N -0.521 5.521 4 C 0.311 3.689 5 N -0.524 5.524 6 C 0.185 3.815 7 C -0.231 4.231 8 C 0.571 3.429 9 O -0.532 6.532 10 N -0.591 5.591 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.185 3.815 14 H 0.054 0.946 15 N -0.735 5.735 16 C -0.333 4.333 17 H 0.065 0.935 18 C -0.043 4.043 19 N -0.943 5.943 20 Si 1.081 2.919 21 H -0.295 1.295 22 H -0.295 1.295 23 H -0.288 1.288 24 C -0.135 4.135 25 C 0.142 3.858 26 H 0.099 0.901 27 C -0.162 4.162 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.201 0.799 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.367 0.633 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 9.259 15.746 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 N -0.236 5.236 4 C 0.024 3.976 5 N -0.238 5.238 6 C 0.019 3.981 7 C -0.239 4.239 8 C 0.357 3.643 9 O -0.409 6.409 10 N -0.324 5.324 11 C -0.019 4.019 12 C -0.191 4.191 13 C 0.074 3.926 14 H 0.072 0.928 15 N -0.377 5.377 16 C -0.464 4.464 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.588 5.588 20 Si 0.912 3.088 21 H -0.223 1.223 22 H -0.222 1.222 23 H -0.214 1.214 24 C -0.174 4.174 25 C 0.039 3.961 26 H 0.117 0.883 27 C -0.220 4.220 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.218 0.782 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.964 9.484 14.567 18.725 hybrid contribution -0.387 -0.140 1.464 1.520 sum 6.576 9.343 16.031 19.686 Atomic orbital electron populations 1.20873 0.86995 1.04337 1.04425 1.21851 0.97864 0.86590 0.85992 1.68353 1.10344 1.29563 1.15308 1.25184 0.86698 0.97282 0.88455 1.68463 1.41339 0.98899 1.15115 1.23456 0.90489 0.96770 0.87431 1.21636 0.96706 0.96242 1.09307 1.17800 0.82029 0.82835 0.81662 1.90787 1.33141 1.79065 1.37920 1.48209 1.46588 1.12859 1.24700 1.21950 0.92714 1.00457 0.86759 1.22658 1.00627 1.01113 0.94660 1.20128 0.94239 0.92499 0.85690 0.92843 1.42446 1.05969 1.81313 1.07942 1.20046 0.91934 1.42539 0.91915 0.91717 1.25753 0.97996 1.00714 0.99622 1.70848 1.04647 1.50034 1.33260 0.83218 0.73745 0.76005 0.75832 1.22276 1.22150 1.21386 1.22237 0.99076 1.02353 0.93714 1.21255 0.95527 0.80136 0.99140 0.88308 1.22158 0.99238 0.98785 1.01775 0.88759 0.89542 0.89833 0.78226 0.81007 0.91065 0.90927 0.90466 0.92357 0.80030 0.93315 0.91883 0.90414 0.91524 0.92705 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.56 36.01 0.34 -0.82 16 2 C 0.22 2.69 6.86 -81.82 -0.56 2.13 16 3 N -0.52 -6.00 10.36 -10.48 -0.11 -6.11 16 4 C 0.31 3.09 12.27 -92.03 -1.13 1.96 16 5 N -0.52 -5.67 10.42 -14.24 -0.15 -5.82 16 6 C 0.19 1.97 9.11 -16.78 -0.15 1.82 16 7 C -0.23 -2.80 4.62 -104.69 -0.48 -3.28 16 8 C 0.57 7.72 6.18 -12.34 -0.08 7.64 16 9 O -0.53 -8.50 15.51 5.32 0.08 -8.41 16 10 N -0.59 -7.62 2.68 -166.33 -0.45 -8.07 16 11 C 0.10 1.30 5.21 -3.71 -0.02 1.28 16 12 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 13 C 0.18 3.36 2.52 -67.89 -0.17 3.19 16 14 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 15 N -0.74 -17.44 5.12 -53.38 -0.27 -17.72 16 16 C -0.33 -8.96 9.93 -15.06 -0.15 -9.11 16 17 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 18 C -0.04 -1.21 5.50 -17.44 -0.10 -1.31 16 19 N -0.94 -28.55 13.70 55.49 0.76 -27.79 16 20 Si 1.08 25.31 29.92 -169.99 -5.09 20.22 16 21 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.13 -2.09 5.02 -26.61 -0.13 -2.23 16 25 C 0.14 1.88 3.22 -67.59 -0.22 1.66 16 26 H 0.10 1.36 7.00 -51.93 -0.36 0.99 16 27 C -0.16 -1.85 9.02 37.16 0.34 -1.52 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.98 6.71 -51.92 -0.35 0.63 16 31 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.17 1.46 7.81 -52.49 -0.41 1.05 16 33 H 0.07 0.83 5.39 -51.93 -0.28 0.55 16 34 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.37 9.13 6.63 -40.82 -0.27 8.86 16 38 H 0.26 7.62 6.77 -40.82 -0.28 7.35 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 0.79 5.72 -51.93 -0.30 0.49 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -32.40 344.70 -8.67 -41.07 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.98 Total: 8.59 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.66 Total: -1.16 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.22 Total: -65.50 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.40 -8.67 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.494 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds