Wall clock time and date at job start Fri Apr 10 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32152 * 120.53870 * 2 1 4 4 C 1.31856 * 120.96776 * 180.26298 * 3 2 1 5 5 N 1.31880 * 122.09464 * 359.75107 * 4 3 2 6 6 C 1.32124 * 120.96804 * 359.97159 * 5 4 3 7 7 C 1.39928 * 120.53426 * 179.73428 * 2 1 3 8 8 C 1.47829 * 120.94126 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00459 * 305.86061 * 8 7 2 10 10 N 1.34780 * 119.99720 * 125.86281 * 8 7 2 11 11 C 1.46930 * 120.63302 * 354.24086 * 10 8 7 12 12 C 1.53185 * 108.76852 * 233.59988 * 11 10 8 13 13 C 1.53048 * 109.31068 * 305.34007 * 12 11 10 14 14 H 1.08996 * 109.46169 * 301.37263 * 13 12 11 15 15 N 1.46497 * 109.45924 * 181.39725 * 13 12 11 16 16 C 1.36946 * 119.99804 * 84.97816 * 15 13 12 17 17 H 1.08005 * 119.99514 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99893 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00379 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47319 * 89.99857 * 20 18 16 22 22 H 1.48499 * 109.47115 * 329.99999 * 20 18 16 23 23 H 1.48499 * 109.47423 * 210.00034 * 20 18 16 24 24 C 1.53038 * 109.52177 * 61.38916 * 13 12 11 25 25 C 1.46925 * 120.62973 * 174.22442 * 10 8 7 26 26 H 1.08991 * 109.58769 * 6.62459 * 25 10 8 27 27 C 1.53008 * 109.58357 * 246.19618 * 25 10 8 28 28 H 1.09001 * 109.47538 * 275.14682 * 1 2 3 29 29 H 1.09002 * 109.46781 * 35.14997 * 1 2 3 30 30 H 1.09008 * 109.47008 * 155.14500 * 1 2 3 31 31 H 1.08002 * 118.95237 * 179.72394 * 4 3 2 32 32 H 1.08002 * 120.54067 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.58088 * 353.37838 * 11 10 8 34 34 H 1.08999 * 109.58746 * 113.65506 * 11 10 8 35 35 H 1.09001 * 109.48403 * 185.40331 * 12 11 10 36 36 H 1.08997 * 109.51352 * 65.29736 * 12 11 10 37 37 H 0.96999 * 120.00858 * 264.97385 * 15 13 12 38 38 H 0.96998 * 120.00088 * 0.02562 * 19 18 16 39 39 H 1.08995 * 109.50129 * 58.57991 * 24 13 12 40 40 H 1.09000 * 109.49363 * 178.67480 * 24 13 12 41 41 H 1.08993 * 109.47173 * 300.71204 * 27 25 10 42 42 H 1.09000 * 109.46795 * 60.71507 * 27 25 10 43 43 H 1.09004 * 109.46653 * 180.70901 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1481 -0.0052 5 7 4.2061 0.0361 -0.0057 6 6 3.6164 -1.1462 -0.0005 7 6 2.2180 -1.2052 0.0056 8 6 1.5120 -2.5041 0.0122 9 8 0.6803 -2.7395 0.8667 10 7 1.7907 -3.4272 -0.9294 11 6 2.6989 -3.1126 -2.0408 12 6 1.9894 -3.4277 -3.3613 13 6 1.5014 -4.8781 -3.3402 14 1 2.3507 -5.5449 -3.1910 15 7 0.8517 -5.1931 -4.6149 16 6 1.6038 -5.5991 -5.6849 17 1 2.6761 -5.6867 -5.5890 18 6 0.9882 -5.8980 -6.8924 19 7 -0.3185 -5.7918 -7.0091 20 14 2.0143 -6.4512 -8.3522 21 1 2.1418 -7.9306 -8.3354 22 1 3.3638 -5.8371 -8.2697 23 1 1.3529 -6.0256 -9.6118 24 6 0.5001 -5.0643 -2.1979 25 6 1.1924 -4.7676 -0.8639 26 1 0.4606 -4.8020 -0.0569 27 6 2.2873 -5.8062 -0.6121 28 1 -0.3634 0.0922 1.0235 29 1 -0.3633 0.8403 -0.5917 30 1 -0.3633 -0.9326 -0.4320 31 1 4.0128 2.0970 -0.0096 32 1 4.2039 -2.0525 -0.0005 33 1 2.9610 -2.0550 -2.0101 34 1 3.6028 -3.7157 -1.9559 35 1 2.6846 -3.2898 -4.1895 36 1 1.1376 -2.7591 -3.4856 37 1 -0.1112 -5.1141 -4.7011 38 1 -0.8512 -5.5042 -6.2513 39 1 -0.3375 -4.3801 -2.3332 40 1 0.1352 -6.0913 -2.1979 41 1 3.0202 -5.7642 -1.4178 42 1 2.7786 -5.5934 0.3374 43 1 1.8431 -6.8010 -0.5764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044480305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:39 Heat of formation + Delta-G solvation = 4.018344 kcal Electronic energy + Delta-G solvation = -25511.416146 eV Core-core repulsion = 21977.075134 eV Total energy + Delta-G solvation = -3534.341012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.56021 -41.12996 -39.06326 -36.59209 -35.56194 -34.61508 -33.72068 -32.95415 -30.93026 -29.75438 -28.61546 -26.55325 -25.71230 -24.64916 -24.18284 -23.30122 -22.11771 -19.92393 -19.26453 -19.13489 -18.51368 -17.89592 -17.49229 -16.55192 -16.29472 -16.16920 -15.86964 -15.49684 -15.28471 -14.99081 -14.92326 -14.59270 -14.25926 -14.16723 -14.07017 -13.86002 -13.40979 -13.37023 -12.99998 -12.85766 -12.73847 -12.57553 -12.39429 -12.15016 -12.03627 -11.87147 -11.70343 -11.51520 -11.10775 -11.06465 -10.90894 -10.63142 -10.46533 -9.83493 -9.11770 -8.36476 -5.31202 -0.57210 -0.16053 1.35673 1.59647 1.69753 1.74320 1.83226 2.55508 2.72302 2.87995 3.01923 3.19243 3.22937 3.41932 3.60152 3.71207 3.78529 3.86601 3.97709 4.13845 4.18691 4.24488 4.31203 4.44056 4.46239 4.50675 4.53788 4.63965 4.64788 4.70589 4.88833 4.92473 4.96236 4.97536 5.17153 5.20893 5.24791 5.41675 5.50640 5.63061 5.71501 6.18608 6.51042 6.85617 6.87592 7.10664 8.00466 8.13247 9.15355 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.003708 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.571689 B = 7548.775934 C = 8006.871272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.213 3.787 3 N -0.534 5.534 4 C 0.313 3.687 5 N -0.532 5.532 6 C 0.192 3.808 7 C -0.248 4.248 8 C 0.576 3.424 9 O -0.560 6.560 10 N -0.589 5.589 11 C 0.116 3.884 12 C -0.140 4.140 13 C 0.181 3.819 14 H 0.058 0.942 15 N -0.750 5.750 16 C -0.324 4.324 17 H 0.071 0.929 18 C -0.106 4.106 19 N -0.980 5.980 20 Si 1.127 2.873 21 H -0.286 1.286 22 H -0.271 1.271 23 H -0.298 1.298 24 C -0.125 4.125 25 C 0.148 3.852 26 H 0.095 0.905 27 C -0.155 4.155 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.235 0.765 32 H 0.195 0.805 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.356 0.644 38 H 0.243 0.757 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 9.792 16.773 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 N -0.249 5.249 4 C 0.027 3.973 5 N -0.246 5.246 6 C 0.025 3.975 7 C -0.256 4.256 8 C 0.363 3.637 9 O -0.439 6.439 10 N -0.321 5.321 11 C -0.007 4.007 12 C -0.181 4.181 13 C 0.072 3.928 14 H 0.075 0.925 15 N -0.391 5.391 16 C -0.455 4.455 17 H 0.089 0.911 18 C -0.297 4.297 19 N -0.628 5.628 20 Si 0.952 3.048 21 H -0.213 1.213 22 H -0.196 1.196 23 H -0.225 1.225 24 C -0.164 4.164 25 C 0.045 3.955 26 H 0.113 0.887 27 C -0.213 4.213 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.251 0.749 32 H 0.212 0.788 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.187 0.813 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.484 10.036 15.646 20.868 hybrid contribution -1.146 -0.236 1.230 1.698 sum 8.338 9.800 16.876 21.222 Atomic orbital electron populations 1.20851 0.86751 1.03936 1.04824 1.22045 0.98377 0.86979 0.85903 1.68426 1.11152 1.29208 1.16068 1.25925 0.86349 0.98441 0.86586 1.68578 1.41310 0.99119 1.15552 1.23816 0.89935 0.97680 0.86042 1.21539 0.97413 0.95320 1.11289 1.17960 0.81460 0.83107 0.81127 1.90772 1.34417 1.79600 1.39088 1.48199 1.46513 1.12698 1.24688 1.21886 0.92681 1.01863 0.84235 1.22439 0.99943 0.99053 0.96663 1.20367 0.94612 0.93571 0.84202 0.92455 1.42701 1.05548 1.81561 1.09317 1.20393 0.92407 1.40172 0.92544 0.91100 1.27102 0.98183 1.01613 1.02768 1.70962 1.05858 1.52947 1.33032 0.82628 0.73426 0.76206 0.72525 1.21264 1.19566 1.22462 1.22103 0.98193 1.01859 0.94229 1.21175 0.96166 0.80996 0.97159 0.88650 1.22111 0.98414 0.98311 1.02470 0.88225 0.88469 0.91348 0.74881 0.78780 0.89682 0.88362 0.91811 0.94146 0.81254 0.94643 0.93300 0.90729 0.91634 0.91180 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 9.56 71.24 0.68 -1.55 16 2 C 0.21 4.87 6.86 42.92 0.29 5.16 16 3 N -0.53 -11.30 10.36 -187.06 -1.94 -13.24 16 4 C 0.31 5.39 12.27 180.84 2.22 7.61 16 5 N -0.53 -9.97 10.42 -198.97 -2.07 -12.04 16 6 C 0.19 3.56 9.11 85.07 0.78 4.34 16 7 C -0.25 -5.58 4.62 -19.91 -0.09 -5.67 16 8 C 0.58 14.86 6.18 86.78 0.54 15.39 16 9 O -0.56 -17.53 15.51 -3.86 -0.06 -17.59 16 10 N -0.59 -14.23 2.68 -798.42 -2.14 -16.37 16 11 C 0.12 2.63 5.21 86.36 0.45 3.08 16 12 C -0.14 -4.45 5.66 30.67 0.17 -4.28 16 13 C 0.18 6.49 2.52 45.02 0.11 6.60 16 14 H 0.06 2.04 6.44 -2.39 -0.02 2.02 16 15 N -0.75 -36.09 5.12 -322.81 -1.65 -37.74 16 16 C -0.32 -17.37 9.93 84.03 0.83 -16.53 16 17 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.11 -5.99 5.50 84.86 0.47 -5.52 16 19 N -0.98 -60.73 13.70 21.65 0.30 -60.44 16 20 Si 1.13 50.79 29.92 68.60 2.05 52.84 16 21 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 C -0.12 -3.86 5.02 30.67 0.15 -3.71 16 25 C 0.15 3.72 3.22 44.98 0.14 3.86 16 26 H 0.10 2.53 7.00 -2.39 -0.02 2.52 16 27 C -0.16 -3.17 9.02 71.98 0.65 -2.52 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.63 6.71 -2.38 -0.02 1.61 16 31 H 0.24 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.20 2.58 7.81 -2.91 -0.02 2.56 16 33 H 0.08 1.76 5.39 -2.38 -0.01 1.75 16 34 H 0.10 1.80 7.49 -2.39 -0.02 1.79 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.36 18.39 6.63 -92.71 -0.61 17.77 16 38 H 0.24 15.07 6.77 -92.71 -0.63 14.44 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 1.36 5.72 -2.39 -0.01 1.35 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -70.32 344.70 2.45 -67.88 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.56 Total: 30.44 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 7.40 Total: 6.26 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -7.51 Total: -139.83 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.06 Total: -17.59 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -70.32 2.45 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.896 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds