Wall clock time and date at job start Fri Apr 10 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32158 * 120.54138 * 2 1 4 4 C 1.31859 * 120.97007 * 180.31006 * 3 2 1 5 5 N 1.31878 * 122.09479 * 359.65969 * 4 3 2 6 6 C 1.32142 * 120.96622 * 0.02562 * 5 4 3 7 7 C 1.39929 * 120.53385 * 179.69248 * 2 1 3 8 8 C 1.47828 * 120.94251 * 359.97438 * 7 2 1 9 9 O 1.21563 * 119.99697 * 50.04185 * 8 7 2 10 10 N 1.34774 * 120.00374 * 230.04200 * 8 7 2 11 11 C 1.46925 * 120.63208 * 5.05590 * 10 8 7 12 12 C 1.53190 * 108.77523 * 126.41118 * 11 10 8 13 13 C 1.53103 * 109.32884 * 54.64096 * 12 11 10 14 14 H 1.09005 * 109.45227 * 58.64817 * 13 12 11 15 15 N 1.46495 * 109.50653 * 178.62902 * 13 12 11 16 16 C 1.36944 * 120.00061 * 275.05215 * 15 13 12 17 17 H 1.07995 * 119.99788 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99984 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99852 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46974 * 59.99593 * 20 18 16 22 22 H 1.48498 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46885 * 299.99671 * 20 18 16 24 24 C 1.53045 * 109.50413 * 298.65310 * 13 12 11 25 25 C 1.46930 * 120.63104 * 185.07916 * 10 8 7 26 26 H 1.08997 * 109.58323 * 113.79821 * 25 10 8 27 27 C 1.53002 * 109.70440 * 353.44644 * 25 10 8 28 28 H 1.09007 * 109.46894 * 264.59646 * 1 2 3 29 29 H 1.09001 * 109.47100 * 24.58447 * 1 2 3 30 30 H 1.08993 * 109.47493 * 144.58672 * 1 2 3 31 31 H 1.08000 * 118.95597 * 179.67767 * 4 3 2 32 32 H 1.07997 * 120.53616 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.58747 * 246.20723 * 11 10 8 34 34 H 1.08997 * 109.58281 * 6.48405 * 11 10 8 35 35 H 1.09005 * 109.49452 * 174.58875 * 12 11 10 36 36 H 1.08999 * 109.50204 * 294.68711 * 12 11 10 37 37 H 0.97001 * 120.00220 * 95.04678 * 15 13 12 38 38 H 0.97006 * 119.99675 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49973 * 301.38464 * 24 13 12 40 40 H 1.08998 * 109.49899 * 181.31728 * 24 13 12 41 41 H 1.09006 * 109.46905 * 305.12605 * 27 25 10 42 42 H 1.08998 * 109.47511 * 65.12027 * 27 25 10 43 43 H 1.08999 * 109.47345 * 185.12544 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 -0.0061 5 7 4.2062 0.0361 -0.0058 6 6 3.6164 -1.1463 0.0001 7 6 2.2179 -1.2052 0.0065 8 6 1.5120 -2.5041 0.0140 9 8 0.6274 -2.7197 -0.7914 10 7 1.8491 -3.4491 0.9138 11 6 2.8376 -3.1651 1.9630 12 6 2.2223 -3.5029 3.3246 13 6 1.7202 -4.9492 3.3091 14 1 2.5503 -5.6193 3.0855 15 7 1.1604 -5.2868 4.6201 16 6 1.9834 -5.7211 5.6248 17 1 3.0450 -5.8152 5.4505 18 6 1.4530 -6.0405 6.8672 19 7 0.1592 -5.9254 7.0797 20 14 2.5757 -6.6323 8.2378 21 1 3.5856 -5.5855 8.5371 22 1 1.7698 -6.9044 9.4551 23 1 3.2642 -7.8769 7.8110 24 6 0.6381 -5.1029 2.2378 25 6 1.2354 -4.7832 0.8639 26 1 1.9937 -5.5250 0.6135 27 6 0.1297 -4.8031 -0.1935 28 1 -0.3633 -0.0968 1.0232 29 1 -0.3633 0.9345 -0.4275 30 1 -0.3634 -0.8375 -0.5954 31 1 4.0129 2.0970 -0.0112 32 1 4.2038 -2.0525 0.0007 33 1 3.7266 -3.7750 1.8023 34 1 3.1084 -2.1097 1.9338 35 1 2.9765 -3.3882 4.1032 36 1 1.3879 -2.8304 3.5238 37 1 0.2068 -5.2026 4.7766 38 1 -0.2115 -6.1490 7.9478 39 1 -0.1814 -4.4153 2.4471 40 1 0.2641 -6.1267 2.2426 41 1 -0.5834 -4.0045 0.0115 42 1 0.5678 -4.6544 -1.1804 43 1 -0.3833 -5.7644 -0.1648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044480306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:42 Heat of formation + Delta-G solvation = 39.421936 kcal Electronic energy + Delta-G solvation = -25494.347136 eV Core-core repulsion = 21961.541338 eV Total energy + Delta-G solvation = -3532.805798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65721 -40.12292 -37.54068 -34.87370 -34.45629 -33.72982 -32.01641 -31.89614 -29.49022 -28.74393 -27.17199 -25.47233 -24.29127 -23.42993 -22.90807 -21.98978 -20.36848 -19.41701 -18.11971 -17.26832 -17.10058 -17.00451 -16.04261 -15.50030 -14.94549 -14.86569 -14.52790 -14.16119 -13.94626 -13.74008 -13.51043 -13.36296 -13.24859 -13.09848 -12.66542 -12.48860 -12.23167 -12.16613 -11.66925 -11.62651 -11.52684 -10.94653 -10.91358 -10.88467 -10.80802 -10.51154 -10.32156 -9.94797 -9.76823 -9.75525 -9.59365 -9.13591 -8.96259 -8.57100 -7.04400 -5.82840 -3.12621 0.29984 0.72762 2.46359 2.84069 3.39327 3.43622 3.44229 3.45196 3.73244 3.81417 4.07877 4.23735 4.52147 4.66192 4.88308 4.98655 5.06970 5.16982 5.21135 5.25474 5.37381 5.39049 5.45393 5.53537 5.55590 5.70696 5.78273 5.82628 5.92776 6.04035 6.07594 6.17856 6.25808 6.35573 6.38455 6.45203 6.59295 6.65574 6.80450 6.95310 7.32634 7.62595 7.72220 8.01346 8.35193 9.46540 10.03146 10.37715 11.39483 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003730 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.646112 B = 7504.996344 C = 8220.891923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.226 3.774 3 N -0.523 5.523 4 C 0.310 3.690 5 N -0.526 5.526 6 C 0.184 3.816 7 C -0.235 4.235 8 C 0.571 3.429 9 O -0.525 6.525 10 N -0.591 5.591 11 C 0.103 3.897 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.049 0.951 15 N -0.723 5.723 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.135 4.135 25 C 0.147 3.853 26 H 0.075 0.925 27 C -0.136 4.136 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.200 0.800 32 H 0.173 0.827 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 9.841 -16.209 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 N -0.237 5.237 4 C 0.023 3.977 5 N -0.240 5.240 6 C 0.017 3.983 7 C -0.242 4.242 8 C 0.357 3.643 9 O -0.403 6.403 10 N -0.324 5.324 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.069 3.931 14 H 0.067 0.933 15 N -0.363 5.363 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.174 4.174 25 C 0.045 3.955 26 H 0.093 0.907 27 C -0.193 4.193 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.217 0.783 32 H 0.190 0.810 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.473 10.506 -16.480 20.049 hybrid contribution 0.143 -0.925 1.138 1.473 sum 4.616 9.581 -15.342 18.668 Atomic orbital electron populations 1.21076 0.87080 1.05499 1.04468 1.21853 0.97902 0.86541 0.85752 1.68381 1.10318 1.29663 1.15371 1.25170 0.86753 0.97260 0.88480 1.68465 1.41387 0.98924 1.15199 1.23489 0.90620 0.96735 0.87438 1.21712 0.96631 0.96589 1.09304 1.17815 0.82626 0.82639 0.81255 1.90825 1.30358 1.78962 1.40166 1.48175 1.42143 1.12801 1.29233 1.22019 0.91086 1.00725 0.88204 1.22696 1.01234 1.01192 0.94007 1.20172 0.94266 0.92332 0.86355 0.93336 1.42412 1.07767 1.78899 1.07236 1.19179 0.90849 1.36676 0.90732 0.91207 1.24746 0.95858 1.02250 0.97859 1.69653 1.10326 1.54610 1.23364 0.86287 0.79559 0.78649 0.81787 1.21264 1.21671 1.21207 1.22306 0.99427 1.02454 0.93228 1.21394 0.95538 0.81880 0.96722 0.90737 1.22212 0.98102 1.00915 0.98061 0.89341 0.89687 0.87733 0.78325 0.81011 0.90931 0.90962 0.90478 0.92206 0.78224 0.93391 0.91682 0.90384 0.90904 0.91483 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.74 36.00 0.35 -0.95 16 2 C 0.23 2.70 6.86 -81.82 -0.56 2.13 16 3 N -0.52 -6.05 10.36 -10.48 -0.11 -6.16 16 4 C 0.31 3.12 12.27 -92.03 -1.13 1.99 16 5 N -0.53 -5.72 10.42 -14.24 -0.15 -5.87 16 6 C 0.18 1.95 8.92 -16.77 -0.15 1.80 16 7 C -0.23 -2.79 4.78 -104.69 -0.50 -3.29 16 8 C 0.57 7.41 6.70 -12.34 -0.08 7.33 16 9 O -0.52 -7.65 10.44 5.31 0.06 -7.59 16 10 N -0.59 -7.49 2.97 -166.33 -0.49 -7.99 16 11 C 0.10 1.26 5.43 -3.71 -0.02 1.24 16 12 C -0.15 -2.41 5.66 -26.58 -0.15 -2.56 16 13 C 0.18 3.25 2.73 -67.86 -0.19 3.07 16 14 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 15 N -0.72 -17.21 5.12 -53.35 -0.27 -17.48 16 16 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 20 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 25 C 0.15 1.93 3.49 -67.60 -0.24 1.69 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 C -0.14 -1.75 7.60 37.16 0.28 -1.46 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.20 5.92 -51.93 -0.31 0.89 16 31 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.17 1.46 7.53 -52.49 -0.40 1.06 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.82 5.18 -51.93 -0.27 0.56 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.04 6.67 -51.93 -0.35 0.69 16 42 H 0.07 0.89 6.83 -51.93 -0.35 0.53 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -30.77 343.19 -9.04 -39.81 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.18 Total: 8.38 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.76 Total: 1.74 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.30 Total: -64.27 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.06 Total: -7.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.77 -9.04 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.227 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds