Wall clock time and date at job start Fri Apr 10 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32158 * 120.54138 * 2 1 4 4 C 1.31859 * 120.97007 * 180.31006 * 3 2 1 5 5 N 1.31878 * 122.09479 * 359.65969 * 4 3 2 6 6 C 1.32142 * 120.96622 * 0.02562 * 5 4 3 7 7 C 1.39929 * 120.53385 * 179.69248 * 2 1 3 8 8 C 1.47828 * 120.94251 * 359.97438 * 7 2 1 9 9 O 1.21563 * 119.99697 * 50.04185 * 8 7 2 10 10 N 1.34774 * 120.00374 * 230.04200 * 8 7 2 11 11 C 1.46925 * 120.63208 * 5.05590 * 10 8 7 12 12 C 1.53190 * 108.77523 * 126.41118 * 11 10 8 13 13 C 1.53103 * 109.32884 * 54.64096 * 12 11 10 14 14 H 1.09005 * 109.45227 * 58.64817 * 13 12 11 15 15 N 1.46495 * 109.50653 * 178.62902 * 13 12 11 16 16 C 1.36944 * 120.00061 * 275.05215 * 15 13 12 17 17 H 1.07995 * 119.99788 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99984 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99852 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46974 * 59.99593 * 20 18 16 22 22 H 1.48498 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46885 * 299.99671 * 20 18 16 24 24 C 1.53045 * 109.50413 * 298.65310 * 13 12 11 25 25 C 1.46930 * 120.63104 * 185.07916 * 10 8 7 26 26 H 1.08997 * 109.58323 * 113.79821 * 25 10 8 27 27 C 1.53002 * 109.70440 * 353.44644 * 25 10 8 28 28 H 1.09007 * 109.46894 * 264.59646 * 1 2 3 29 29 H 1.09001 * 109.47100 * 24.58447 * 1 2 3 30 30 H 1.08993 * 109.47493 * 144.58672 * 1 2 3 31 31 H 1.08000 * 118.95597 * 179.67767 * 4 3 2 32 32 H 1.07997 * 120.53616 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.58747 * 246.20723 * 11 10 8 34 34 H 1.08997 * 109.58281 * 6.48405 * 11 10 8 35 35 H 1.09005 * 109.49452 * 174.58875 * 12 11 10 36 36 H 1.08999 * 109.50204 * 294.68711 * 12 11 10 37 37 H 0.97001 * 120.00220 * 95.04678 * 15 13 12 38 38 H 0.97006 * 119.99675 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49973 * 301.38464 * 24 13 12 40 40 H 1.08998 * 109.49899 * 181.31728 * 24 13 12 41 41 H 1.09006 * 109.46905 * 305.12605 * 27 25 10 42 42 H 1.08998 * 109.47511 * 65.12027 * 27 25 10 43 43 H 1.08999 * 109.47345 * 185.12544 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 -0.0061 5 7 4.2062 0.0361 -0.0058 6 6 3.6164 -1.1463 0.0001 7 6 2.2179 -1.2052 0.0065 8 6 1.5120 -2.5041 0.0140 9 8 0.6274 -2.7197 -0.7914 10 7 1.8491 -3.4491 0.9138 11 6 2.8376 -3.1651 1.9630 12 6 2.2223 -3.5029 3.3246 13 6 1.7202 -4.9492 3.3091 14 1 2.5503 -5.6193 3.0855 15 7 1.1604 -5.2868 4.6201 16 6 1.9834 -5.7211 5.6248 17 1 3.0450 -5.8152 5.4505 18 6 1.4530 -6.0405 6.8672 19 7 0.1592 -5.9254 7.0797 20 14 2.5757 -6.6323 8.2378 21 1 3.5856 -5.5855 8.5371 22 1 1.7698 -6.9044 9.4551 23 1 3.2642 -7.8769 7.8110 24 6 0.6381 -5.1029 2.2378 25 6 1.2354 -4.7832 0.8639 26 1 1.9937 -5.5250 0.6135 27 6 0.1297 -4.8031 -0.1935 28 1 -0.3633 -0.0968 1.0232 29 1 -0.3633 0.9345 -0.4275 30 1 -0.3634 -0.8375 -0.5954 31 1 4.0129 2.0970 -0.0112 32 1 4.2038 -2.0525 0.0007 33 1 3.7266 -3.7750 1.8023 34 1 3.1084 -2.1097 1.9338 35 1 2.9765 -3.3882 4.1032 36 1 1.3879 -2.8304 3.5238 37 1 0.2068 -5.2026 4.7766 38 1 -0.2115 -6.1490 7.9478 39 1 -0.1814 -4.4153 2.4471 40 1 0.2641 -6.1267 2.2426 41 1 -0.5834 -4.0045 0.0115 42 1 0.5678 -4.6544 -1.1804 43 1 -0.3833 -5.7644 -0.1648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044480306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:42 Heat of formation + Delta-G solvation = 20.517085 kcal Electronic energy + Delta-G solvation = -25495.166911 eV Core-core repulsion = 21961.541338 eV Total energy + Delta-G solvation = -3533.625573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.54609 -41.13804 -38.78558 -36.27709 -35.46834 -34.75386 -33.72836 -32.88926 -31.07156 -29.68463 -28.42352 -26.40192 -25.90929 -24.53474 -24.11201 -23.06261 -21.70904 -20.57561 -19.14049 -18.97444 -18.07336 -17.87496 -17.11388 -16.71517 -16.51074 -15.92413 -15.58569 -15.48352 -15.39650 -14.91530 -14.70347 -14.65492 -14.23631 -14.08437 -13.87581 -13.52550 -13.37047 -13.22460 -13.09294 -12.86432 -12.72366 -12.61898 -12.48687 -12.22148 -12.03149 -11.98259 -11.74114 -11.63348 -11.36533 -10.89894 -10.63710 -10.43025 -10.16356 -9.66258 -9.00759 -7.92678 -5.21448 -0.53636 -0.11090 1.46464 1.49008 1.51024 1.57012 1.83826 2.57139 2.60860 2.94654 3.06679 3.25551 3.30850 3.40755 3.73041 3.79142 3.84498 3.98439 4.06683 4.21942 4.27999 4.32463 4.40096 4.53624 4.54978 4.61246 4.69313 4.72065 4.73113 4.85961 4.97233 4.99404 5.05044 5.16841 5.25598 5.27589 5.42949 5.48686 5.54092 5.67205 5.76653 6.28277 6.30254 6.91247 6.99931 7.35166 8.11015 8.33372 9.30712 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003730 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.646112 B = 7504.996344 C = 8220.891923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 N -0.536 5.536 4 C 0.311 3.689 5 N -0.534 5.534 6 C 0.189 3.811 7 C -0.249 4.249 8 C 0.574 3.426 9 O -0.543 6.543 10 N -0.592 5.592 11 C 0.114 3.886 12 C -0.140 4.140 13 C 0.174 3.826 14 H 0.054 0.946 15 N -0.738 5.738 16 C -0.237 4.237 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.969 3.031 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.277 1.277 24 C -0.124 4.124 25 C 0.153 3.847 26 H 0.095 0.905 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.195 0.805 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 10.291 -17.379 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 N -0.251 5.251 4 C 0.025 3.975 5 N -0.248 5.248 6 C 0.023 3.977 7 C -0.257 4.257 8 C 0.361 3.639 9 O -0.422 6.422 10 N -0.323 5.323 11 C -0.009 4.009 12 C -0.181 4.181 13 C 0.065 3.935 14 H 0.072 0.928 15 N -0.377 5.377 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.799 3.201 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.203 1.203 24 C -0.163 4.163 25 C 0.050 3.950 26 H 0.113 0.887 27 C -0.183 4.183 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.212 0.788 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.712 10.976 -17.698 21.880 hybrid contribution -0.530 -0.999 1.414 1.811 sum 6.182 9.977 -16.284 20.073 Atomic orbital electron populations 1.21032 0.86761 1.05610 1.04319 1.22060 0.98446 0.86930 0.85708 1.68448 1.11112 1.29433 1.16124 1.25883 0.86432 0.98397 0.86770 1.68572 1.41412 0.99186 1.15644 1.23849 0.90169 0.97585 0.86137 1.21634 0.97273 0.95806 1.10982 1.17937 0.82238 0.82849 0.80869 1.90823 1.31132 1.79316 1.40934 1.48161 1.42231 1.12642 1.29306 1.21962 0.91252 1.02110 0.85552 1.22462 1.00325 0.99006 0.96305 1.20430 0.94983 0.93496 0.84544 0.92799 1.42653 1.06999 1.79118 1.08906 1.19602 0.91531 1.34497 0.91210 0.90215 1.25524 0.97098 1.03789 1.00381 1.69818 1.12120 1.56905 1.23406 0.85274 0.77758 0.78470 0.78645 1.20424 1.22665 1.20277 1.22163 0.98247 1.01879 0.94023 1.21352 0.96082 0.82672 0.94863 0.88701 1.22082 0.97637 1.00827 0.97751 0.89333 0.88563 0.88833 0.75100 0.78808 0.88207 0.89663 0.91661 0.94113 0.79867 0.94204 0.93202 0.90795 0.92625 0.91552 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 9.74 71.24 0.69 -1.78 16 2 C 0.21 4.86 6.86 42.92 0.29 5.16 16 3 N -0.54 -11.48 10.36 -187.07 -1.94 -13.42 16 4 C 0.31 5.48 12.27 180.84 2.22 7.70 16 5 N -0.53 -10.17 10.42 -198.97 -2.07 -12.24 16 6 C 0.19 3.50 8.92 85.07 0.76 4.26 16 7 C -0.25 -5.49 4.78 -19.91 -0.10 -5.58 16 8 C 0.57 14.05 6.70 86.78 0.58 14.63 16 9 O -0.54 -15.35 10.44 -3.91 -0.04 -15.40 16 10 N -0.59 -13.82 2.97 -798.43 -2.37 -16.20 16 11 C 0.11 2.49 5.43 86.36 0.47 2.96 16 12 C -0.14 -4.35 5.66 30.69 0.17 -4.18 16 13 C 0.17 6.17 2.73 45.04 0.12 6.30 16 14 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 15 N -0.74 -35.41 5.12 -322.71 -1.65 -37.06 16 16 C -0.24 -12.52 9.93 84.03 0.83 -11.68 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 18 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 20 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.12 -3.78 4.84 30.67 0.15 -3.64 16 25 C 0.15 3.73 3.49 44.97 0.16 3.88 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 C -0.13 -3.08 7.60 71.98 0.55 -2.53 16 28 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.14 5.92 -2.39 -0.01 2.13 16 31 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.20 2.58 7.53 -2.91 -0.02 2.56 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.71 5.18 -2.39 -0.01 1.70 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.37 19.57 7.80 -92.71 -0.72 18.85 16 38 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.56 6.67 -2.38 -0.02 1.54 16 42 H 0.07 1.66 6.83 -2.39 -0.02 1.64 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.45 343.19 1.91 -64.54 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.31 Total: 29.46 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.37 Total: 11.73 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -7.76 Total: -137.29 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.04 Total: -15.40 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.45 1.91 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044480306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.059 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds