Wall clock time and date at job start Fri Apr 10 2020 17:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 126.29076 * 2 1 4 4 C 1.47425 * 126.41575 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99989 * 359.72230 * 4 3 2 6 6 N 1.34778 * 120.00022 * 179.71377 * 4 3 2 7 7 C 1.46499 * 119.99921 * 180.02562 * 6 4 3 8 8 H 1.09001 * 110.68413 * 37.01000 * 7 6 4 9 9 C 1.54850 * 110.62873 * 159.99823 * 7 6 4 10 10 C 1.55847 * 103.44660 * 118.48627 * 9 7 6 11 11 H 1.09001 * 115.55794 * 158.81469 * 10 9 7 12 12 C 1.55841 * 105.06684 * 288.17733 * 10 9 7 13 13 C 1.55876 * 103.52921 * 72.42828 * 12 10 9 14 14 C 1.55848 * 110.62795 * 274.02519 * 7 6 4 15 15 H 1.08999 * 115.56400 * 82.69735 * 14 7 6 16 16 N 1.50241 * 101.04854 * 32.94457 * 10 9 7 17 17 C 1.36931 * 130.84272 * 126.01479 * 16 10 9 18 18 H 1.08003 * 120.00334 * 180.02562 * 17 16 10 19 19 C 1.38817 * 119.99756 * 0.02562 * 17 16 10 20 20 N 1.31617 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47278 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46928 * 120.00655 * 21 19 17 24 24 H 1.48503 * 109.46855 * 240.00342 * 21 19 17 25 25 C 1.41293 * 107.17154 * 179.75973 * 3 2 1 26 26 N 1.30450 * 108.02192 * 0.24036 * 25 3 2 27 27 N 1.34259 * 126.29282 * 180.17436 * 2 1 3 28 28 C 1.46504 * 125.75577 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47104 * 90.00274 * 1 2 3 30 30 H 1.09001 * 109.46891 * 210.00614 * 1 2 3 31 31 H 1.09004 * 109.47165 * 330.00426 * 1 2 3 32 32 H 0.96993 * 119.99991 * 0.02562 * 6 4 3 33 33 H 1.09000 * 110.62664 * 359.97438 * 9 7 6 34 34 H 1.09002 * 110.76259 * 237.04438 * 9 7 6 35 35 H 1.08994 * 110.62475 * 190.31370 * 12 10 9 36 36 H 1.08997 * 110.62782 * 313.17550 * 12 10 9 37 37 H 1.09004 * 110.10034 * 241.14157 * 13 12 10 38 38 H 1.09000 * 111.60397 * 117.80726 * 13 12 10 39 39 H 0.97002 * 119.99939 * 179.97438 * 20 19 17 40 40 H 1.07998 * 125.99170 * 180.20277 * 25 3 2 41 41 H 1.08996 * 109.47203 * 270.26734 * 28 27 2 42 42 H 1.09001 * 109.46472 * 30.26458 * 28 27 2 43 43 H 1.08996 * 109.47245 * 150.26153 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7877 -0.0041 6 7 2.7999 3.5107 0.0063 7 6 2.3644 4.9094 0.0074 8 1 1.4700 5.0337 0.6178 9 6 3.5004 5.8341 0.5096 10 6 3.7772 6.7636 -0.7103 11 1 4.2719 7.7072 -0.4800 12 6 4.4865 5.8550 -1.7592 13 6 3.3410 4.9338 -2.2776 14 6 2.1094 5.4062 -1.4476 15 1 1.1352 5.1542 -1.8667 16 7 2.4025 6.8730 -1.3067 17 6 1.6488 7.9713 -1.6238 18 1 0.6652 7.8459 -2.0520 19 6 2.1489 9.2458 -1.3950 20 7 3.3477 9.3986 -0.8737 21 14 1.1203 10.7442 -1.8270 22 1 -0.1800 10.3052 -2.3943 23 1 0.8792 11.5488 -0.6024 24 1 1.8438 11.5696 -2.8272 25 6 3.6590 0.6499 0.0057 26 7 3.6341 -0.6544 0.0036 27 7 2.3017 -1.0821 -0.0033 28 6 1.8502 -2.4758 -0.0070 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.7461 3.2973 0.0097 33 1 4.3877 5.2520 0.7583 34 1 3.1721 6.4173 1.3700 35 1 4.8851 6.4533 -2.5784 36 1 5.2792 5.2729 -1.2893 37 1 3.5723 3.8907 -2.0616 38 1 3.1630 5.0759 -3.3436 39 1 3.6973 10.2893 -0.7141 40 1 4.5449 1.2676 0.0102 41 1 1.7340 -2.8229 1.0197 42 1 0.8936 -2.5464 -0.5248 43 1 2.5868 -3.0951 -0.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095180553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:49 Heat of formation + Delta-G solvation = 88.859463 kcal Electronic energy + Delta-G solvation = -25387.058870 eV Core-core repulsion = 21856.396845 eV Total energy + Delta-G solvation = -3530.662026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54845 -39.66928 -37.94313 -34.13834 -33.51620 -32.23365 -32.02328 -29.29764 -28.99859 -28.15557 -27.04847 -26.74902 -24.15938 -22.60179 -21.39567 -20.57621 -19.75239 -19.35244 -18.43251 -17.57123 -16.85682 -16.02811 -15.68389 -15.32894 -14.85620 -14.70011 -14.59811 -14.03761 -13.74995 -13.66391 -13.26160 -13.20264 -12.93826 -12.68411 -12.31953 -12.22270 -12.14024 -11.69621 -11.43155 -10.97956 -10.95717 -10.87107 -10.82534 -10.76304 -10.15940 -10.02195 -9.77444 -9.58039 -9.52548 -9.29739 -9.17663 -8.89105 -8.74538 -8.33058 -6.85744 -5.68494 -3.05927 1.44989 2.14025 2.15890 3.42063 3.47893 3.50173 3.65018 3.71198 4.26073 4.42180 4.50467 4.73738 4.77138 4.94173 5.03185 5.21408 5.28036 5.38015 5.39784 5.44085 5.62645 5.75756 5.87463 5.91803 5.96424 6.03198 6.15682 6.19337 6.30061 6.39249 6.40388 6.60961 6.67770 6.68867 6.78801 6.88987 7.04309 7.08476 7.34329 7.40573 7.58049 7.81671 8.00390 8.22076 8.68299 9.15194 9.77652 10.58779 11.41283 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.003367 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.305927 B = 8313.856241 C = 8797.553281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.153 3.847 3 C -0.291 4.291 4 C 0.590 3.410 5 O -0.551 6.551 6 N -0.708 5.708 7 C 0.132 3.868 8 H 0.082 0.918 9 C -0.141 4.141 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.129 3.871 15 H 0.084 0.916 16 N -0.591 5.591 17 C -0.206 4.206 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.924 5.924 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.083 3.917 26 N -0.302 5.302 27 N -0.368 5.368 28 C 0.097 3.903 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.189 0.811 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -21.325 2.690 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.305 4.305 4 C 0.377 3.623 5 O -0.430 6.430 6 N -0.358 5.358 7 C 0.026 3.974 8 H 0.100 0.900 9 C -0.181 4.181 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.020 3.980 15 H 0.102 0.898 16 N -0.312 5.312 17 C -0.335 4.335 18 H 0.097 0.903 19 C -0.209 4.209 20 N -0.573 5.573 21 Si 0.747 3.253 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.104 4.104 26 N -0.122 5.122 27 N -0.148 5.148 28 C -0.044 4.044 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.227 0.773 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.206 0.794 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.109 -21.998 2.658 22.158 hybrid contribution -0.356 1.197 -0.250 1.274 sum -0.465 -20.801 2.408 20.945 Atomic orbital electron populations 1.20682 0.86090 1.04764 1.04139 1.21530 0.94915 0.86252 0.95239 1.20153 0.92714 0.94007 1.23666 1.17161 0.85714 0.83441 0.75979 1.90719 1.16550 1.84233 1.51545 1.45981 1.08890 1.06432 1.74469 1.22572 0.97996 0.77583 0.99231 0.89985 1.23300 0.96010 0.97855 1.00954 1.23761 0.86431 0.96993 0.88121 0.82902 1.23216 0.96204 0.97906 1.00253 1.23054 0.97301 0.97443 0.99109 1.23189 0.96034 0.85862 0.92928 0.89834 1.46500 1.14782 0.98673 1.71238 1.19115 0.97439 0.83257 1.33651 0.90290 1.24689 0.97089 0.97157 1.01953 1.69446 1.16682 1.20956 1.50173 0.85967 0.79091 0.82781 0.77502 1.20566 1.21833 1.21880 1.24033 0.97384 0.91921 0.97082 1.77153 0.96016 1.13362 1.25624 1.48331 1.04137 1.06263 1.56107 1.21920 1.01263 0.77539 1.03649 0.89580 0.91401 0.87280 0.77317 0.92761 0.91656 0.92848 0.93572 0.93065 0.93043 0.93679 0.79406 0.90448 0.89227 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.34 36.01 0.34 -0.61 16 2 C 0.15 1.82 7.01 -81.60 -0.57 1.25 16 3 C -0.29 -3.95 6.13 -105.07 -0.64 -4.59 16 4 C 0.59 9.49 7.81 -12.52 -0.10 9.39 16 5 O -0.55 -10.52 14.57 5.27 0.08 -10.45 16 6 N -0.71 -10.83 3.65 -52.47 -0.19 -11.02 16 7 C 0.13 2.50 3.08 -65.44 -0.20 2.30 16 8 H 0.08 1.74 7.71 -51.93 -0.40 1.34 16 9 C -0.14 -2.69 6.20 -24.24 -0.15 -2.84 16 10 C 0.15 3.47 4.72 -62.80 -0.30 3.17 16 11 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 12 C -0.14 -2.65 6.46 -23.68 -0.15 -2.80 16 13 C -0.13 -2.44 6.42 -23.67 -0.15 -2.59 16 14 C 0.13 2.74 5.30 -62.79 -0.33 2.41 16 15 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 16 N -0.59 -14.84 2.98 -145.81 -0.43 -15.27 16 17 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.92 -26.31 10.47 55.49 0.58 -25.73 16 21 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 C 0.08 0.99 11.50 -16.98 -0.20 0.80 16 26 N -0.30 -3.75 12.50 30.86 0.39 -3.37 16 27 N -0.37 -3.94 3.98 -63.34 -0.25 -4.19 16 28 C 0.10 0.57 11.06 59.85 0.66 1.23 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.44 7.71 -51.93 -0.40 0.04 16 31 H 0.11 1.30 6.51 -51.93 -0.34 0.96 16 32 H 0.39 4.97 7.00 -40.82 -0.29 4.68 16 33 H 0.05 0.86 7.34 -51.93 -0.38 0.48 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 37 H 0.05 0.84 6.56 -51.93 -0.34 0.50 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.19 1.66 7.50 -52.49 -0.39 1.26 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.33 7.64 -51.93 -0.40 -0.07 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -33.24 344.56 -7.85 -41.09 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.13 Total: 5.88 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.05 Total: 0.72 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.09 Total: -59.58 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.24 -7.85 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095180553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.953 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds