Wall clock time and date at job start Fri Apr 10 2020 17:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 126.29076 * 2 1 4 4 C 1.47425 * 126.41575 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99989 * 359.72230 * 4 3 2 6 6 N 1.34778 * 120.00022 * 179.71377 * 4 3 2 7 7 C 1.46499 * 119.99921 * 180.02562 * 6 4 3 8 8 H 1.09001 * 110.68413 * 37.01000 * 7 6 4 9 9 C 1.54850 * 110.62873 * 159.99823 * 7 6 4 10 10 C 1.55847 * 103.44660 * 118.48627 * 9 7 6 11 11 H 1.09001 * 115.55794 * 158.81469 * 10 9 7 12 12 C 1.55841 * 105.06684 * 288.17733 * 10 9 7 13 13 C 1.55876 * 103.52921 * 72.42828 * 12 10 9 14 14 C 1.55848 * 110.62795 * 274.02519 * 7 6 4 15 15 H 1.08999 * 115.56400 * 82.69735 * 14 7 6 16 16 N 1.50241 * 101.04854 * 32.94457 * 10 9 7 17 17 C 1.36931 * 130.84272 * 126.01479 * 16 10 9 18 18 H 1.08003 * 120.00334 * 180.02562 * 17 16 10 19 19 C 1.38817 * 119.99756 * 0.02562 * 17 16 10 20 20 N 1.31617 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47278 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46928 * 120.00655 * 21 19 17 24 24 H 1.48503 * 109.46855 * 240.00342 * 21 19 17 25 25 C 1.41293 * 107.17154 * 179.75973 * 3 2 1 26 26 N 1.30450 * 108.02192 * 0.24036 * 25 3 2 27 27 N 1.34259 * 126.29282 * 180.17436 * 2 1 3 28 28 C 1.46504 * 125.75577 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47104 * 90.00274 * 1 2 3 30 30 H 1.09001 * 109.46891 * 210.00614 * 1 2 3 31 31 H 1.09004 * 109.47165 * 330.00426 * 1 2 3 32 32 H 0.96993 * 119.99991 * 0.02562 * 6 4 3 33 33 H 1.09000 * 110.62664 * 359.97438 * 9 7 6 34 34 H 1.09002 * 110.76259 * 237.04438 * 9 7 6 35 35 H 1.08994 * 110.62475 * 190.31370 * 12 10 9 36 36 H 1.08997 * 110.62782 * 313.17550 * 12 10 9 37 37 H 1.09004 * 110.10034 * 241.14157 * 13 12 10 38 38 H 1.09000 * 111.60397 * 117.80726 * 13 12 10 39 39 H 0.97002 * 119.99939 * 179.97438 * 20 19 17 40 40 H 1.07998 * 125.99170 * 180.20277 * 25 3 2 41 41 H 1.08996 * 109.47203 * 270.26734 * 28 27 2 42 42 H 1.09001 * 109.46472 * 30.26458 * 28 27 2 43 43 H 1.08996 * 109.47245 * 150.26153 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7877 -0.0041 6 7 2.7999 3.5107 0.0063 7 6 2.3644 4.9094 0.0074 8 1 1.4700 5.0337 0.6178 9 6 3.5004 5.8341 0.5096 10 6 3.7772 6.7636 -0.7103 11 1 4.2719 7.7072 -0.4800 12 6 4.4865 5.8550 -1.7592 13 6 3.3410 4.9338 -2.2776 14 6 2.1094 5.4062 -1.4476 15 1 1.1352 5.1542 -1.8667 16 7 2.4025 6.8730 -1.3067 17 6 1.6488 7.9713 -1.6238 18 1 0.6652 7.8459 -2.0520 19 6 2.1489 9.2458 -1.3950 20 7 3.3477 9.3986 -0.8737 21 14 1.1203 10.7442 -1.8270 22 1 -0.1800 10.3052 -2.3943 23 1 0.8792 11.5488 -0.6024 24 1 1.8438 11.5696 -2.8272 25 6 3.6590 0.6499 0.0057 26 7 3.6341 -0.6544 0.0036 27 7 2.3017 -1.0821 -0.0033 28 6 1.8502 -2.4758 -0.0070 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.7461 3.2973 0.0097 33 1 4.3877 5.2520 0.7583 34 1 3.1721 6.4173 1.3700 35 1 4.8851 6.4533 -2.5784 36 1 5.2792 5.2729 -1.2893 37 1 3.5723 3.8907 -2.0616 38 1 3.1630 5.0759 -3.3436 39 1 3.6973 10.2893 -0.7141 40 1 4.5449 1.2676 0.0102 41 1 1.7340 -2.8229 1.0197 42 1 0.8936 -2.5464 -0.5248 43 1 2.5868 -3.0951 -0.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095180553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:48 Heat of formation + Delta-G solvation = 67.251494 kcal Electronic energy + Delta-G solvation = -25387.995862 eV Core-core repulsion = 21856.396845 eV Total energy + Delta-G solvation = -3531.599017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44028 -41.18121 -39.36424 -35.45656 -34.61915 -34.00398 -32.87424 -30.93722 -30.74909 -29.53979 -28.03919 -27.63671 -26.05535 -23.73880 -22.79447 -21.78317 -21.16687 -20.63826 -20.01008 -18.94856 -18.41224 -16.92775 -16.82189 -16.68835 -16.58714 -16.17843 -15.79199 -15.44158 -15.10834 -14.88075 -14.10897 -14.06822 -13.98652 -13.80031 -13.45467 -13.43513 -13.35067 -13.15327 -13.02891 -12.84415 -12.77329 -12.54031 -12.31480 -11.95931 -11.87557 -11.82923 -11.50619 -11.14219 -11.01534 -10.75092 -10.72821 -10.35628 -9.98169 -9.53265 -8.81605 -7.77092 -5.15956 0.53627 1.19863 1.44486 1.47703 1.48082 1.57939 2.36097 2.54334 2.55215 3.36557 3.51977 3.60632 3.64610 3.96554 4.02420 4.10825 4.18096 4.21580 4.40947 4.42557 4.46649 4.52337 4.58652 4.65086 4.66444 4.69640 4.75663 4.86012 4.96792 5.02540 5.11582 5.13685 5.19452 5.32034 5.37564 5.44903 5.50578 5.60816 5.81498 5.92523 5.93298 6.30933 6.53911 6.80135 7.08648 7.45991 7.71971 8.58526 9.30026 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.003367 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.305927 B = 8313.856241 C = 8797.553281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.153 3.847 3 C -0.320 4.320 4 C 0.591 3.409 5 O -0.588 6.588 6 N -0.696 5.696 7 C 0.152 3.848 8 H 0.053 0.947 9 C -0.126 4.126 10 C 0.138 3.862 11 H 0.121 0.879 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.120 3.880 15 H 0.064 0.936 16 N -0.619 5.619 17 C -0.222 4.222 18 H 0.071 0.929 19 C -0.064 4.064 20 N -0.944 5.944 21 Si 0.975 3.025 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.088 3.912 26 N -0.322 5.322 27 N -0.363 5.363 28 C 0.084 3.916 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.248 0.752 40 H 0.216 0.784 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -24.125 2.818 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.019 3.981 3 C -0.334 4.334 4 C 0.380 3.620 5 O -0.470 6.470 6 N -0.347 5.347 7 C 0.045 3.955 8 H 0.072 0.928 9 C -0.166 4.166 10 C 0.032 3.968 11 H 0.138 0.862 12 C -0.164 4.164 13 C -0.155 4.155 14 C 0.012 3.988 15 H 0.082 0.918 16 N -0.341 5.341 17 C -0.351 4.351 18 H 0.088 0.912 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.804 3.196 22 H -0.199 1.199 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.099 4.099 26 N -0.142 5.142 27 N -0.143 5.143 28 C -0.055 4.055 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.232 0.768 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.729 -24.876 2.789 25.042 hybrid contribution -0.664 1.932 -0.280 2.062 sum 0.065 -22.943 2.509 23.080 Atomic orbital electron populations 1.20692 0.84829 1.05181 1.04671 1.21841 0.95829 0.86420 0.93995 1.20013 0.94124 0.92739 1.26571 1.17532 0.85122 0.84495 0.74862 1.90708 1.18217 1.84925 1.53170 1.45689 1.09851 1.04655 1.74481 1.22008 0.97030 0.79600 0.96879 0.92841 1.23129 0.97502 0.97303 0.98664 1.23690 0.85601 0.97077 0.90426 0.86182 1.23116 0.96980 0.97468 0.98794 1.22949 0.95552 0.99012 0.97962 1.23311 0.96306 0.84328 0.94857 0.91826 1.46760 1.15885 0.99556 1.71921 1.19337 0.97600 0.84768 1.33390 0.91160 1.25399 0.98316 0.99384 1.02583 1.69673 1.17692 1.20947 1.51066 0.85047 0.77966 0.79603 0.76948 1.19892 1.21921 1.21873 1.24428 0.97515 0.91980 0.96002 1.77122 0.97176 1.13614 1.26262 1.48692 1.03431 1.07538 1.54597 1.22363 1.02653 0.75165 1.05305 0.88891 0.87950 0.89858 0.75225 0.88531 0.93492 0.94829 0.89264 0.89764 0.94044 0.94183 0.76792 0.88780 0.86805 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.34 71.24 0.67 -1.00 16 2 C 0.15 3.32 7.01 42.14 0.30 3.61 16 3 C -0.32 -8.06 6.13 -20.15 -0.12 -8.18 16 4 C 0.59 18.37 7.81 86.66 0.68 19.05 16 5 O -0.59 -22.68 14.57 -4.05 -0.06 -22.74 16 6 N -0.70 -19.94 3.65 -438.16 -1.60 -21.54 16 7 C 0.15 5.69 3.08 46.61 0.14 5.83 16 8 H 0.05 2.32 7.71 -2.39 -0.02 2.31 16 9 C -0.13 -4.69 6.20 32.21 0.20 -4.49 16 10 C 0.14 6.24 4.72 46.23 0.22 6.46 16 11 H 0.12 6.35 5.52 -2.39 -0.01 6.34 16 12 C -0.12 -4.61 6.46 32.57 0.21 -4.40 16 13 C -0.12 -4.17 6.42 32.58 0.21 -3.96 16 14 C 0.12 5.15 5.30 46.23 0.24 5.39 16 15 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 16 N -0.62 -31.86 2.98 -615.21 -1.83 -33.69 16 17 C -0.22 -12.73 10.59 84.04 0.89 -11.84 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 19 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 20 N -0.94 -55.27 10.47 21.65 0.23 -55.05 16 21 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 C 0.09 1.83 11.50 85.65 0.99 2.82 16 26 N -0.32 -7.09 12.50 -56.27 -0.70 -7.80 16 27 N -0.36 -6.71 3.98 -354.31 -1.41 -8.12 16 28 C 0.08 0.69 11.06 127.77 1.41 2.10 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.01 7.71 -2.39 -0.02 1.00 16 31 H 0.08 1.95 6.51 -2.38 -0.02 1.94 16 32 H 0.41 8.85 7.00 -92.71 -0.65 8.20 16 33 H 0.10 2.73 7.34 -2.39 -0.02 2.72 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.54 7.82 -2.39 -0.02 2.52 16 37 H 0.08 2.48 6.56 -2.38 -0.02 2.47 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.22 2.93 7.50 -2.91 -0.02 2.91 16 41 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.11 0.38 7.64 -2.39 -0.02 0.36 16 43 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -75.48 344.56 3.53 -71.95 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.38 Total: 20.09 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.49 Total: 8.20 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.32 Total: -126.20 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.48 3.53 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095180553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.201 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds