Wall clock time and date at job start Fri Apr 10 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04393 * 2 1 4 4 N 1.30836 * 108.20367 * 179.97438 * 3 2 1 5 5 N 1.40086 * 108.20449 * 0.02562 * 4 3 2 6 6 C 1.46510 * 126.03655 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47008 * 305.02886 * 6 5 4 8 8 O 1.21282 * 120.00631 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00429 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.56125 * 33.56502 * 10 9 7 12 12 C 1.54856 * 110.62803 * 156.46790 * 10 9 7 13 13 C 1.55839 * 103.44743 * 118.64879 * 12 10 9 14 14 H 1.08998 * 115.56678 * 158.81261 * 13 12 10 15 15 C 1.55852 * 105.73860 * 287.98856 * 13 12 10 16 16 C 1.55480 * 103.32850 * 71.92578 * 15 13 12 17 17 C 1.55852 * 103.32692 * 359.97438 * 16 15 13 18 18 H 1.08994 * 116.12990 * 159.23659 * 17 16 15 19 19 N 1.50238 * 101.04814 * 33.02455 * 17 16 15 20 20 C 1.36946 * 130.83683 * 126.06832 * 19 17 16 21 21 H 1.07993 * 119.99802 * 165.56142 * 20 19 17 22 22 C 1.38807 * 119.99941 * 345.83364 * 20 19 17 23 23 N 1.31617 * 120.00008 * 161.91824 * 22 20 19 24 24 Si 1.86809 * 120.00023 * 341.92065 * 22 20 19 25 25 H 1.48499 * 109.46989 * 85.66921 * 24 22 20 26 26 H 1.48494 * 109.46977 * 205.66965 * 24 22 20 27 27 H 1.48497 * 109.46840 * 325.67047 * 24 22 20 28 28 C 1.34943 * 107.92597 * 0.26135 * 5 4 3 29 29 H 1.08998 * 109.47443 * 90.01723 * 1 2 3 30 30 H 1.08997 * 109.47408 * 210.02798 * 1 2 3 31 31 H 1.09001 * 109.46844 * 330.02135 * 1 2 3 32 32 H 1.07994 * 125.89658 * 0.02652 * 3 2 1 33 33 H 1.08996 * 109.47040 * 185.02328 * 6 5 4 34 34 H 1.08997 * 109.46695 * 65.02618 * 6 5 4 35 35 H 0.97003 * 119.99500 * 359.97438 * 9 7 6 36 36 H 1.08994 * 110.62460 * 0.15503 * 12 10 9 37 37 H 1.09006 * 110.62115 * 237.13544 * 12 10 9 38 38 H 1.09003 * 110.62560 * 190.50165 * 15 13 12 39 39 H 1.08994 * 110.62657 * 313.51984 * 15 13 12 40 40 H 1.09000 * 110.60728 * 241.58818 * 16 15 13 41 41 H 1.08994 * 110.89701 * 118.55020 * 16 15 13 42 42 H 0.97002 * 120.00031 * 180.02562 * 23 22 20 43 43 H 1.08000 * 126.12865 * 179.73768 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0006 5 7 3.5843 -0.6707 0.0003 6 6 4.7745 -1.5251 0.0003 7 6 5.6582 -1.1554 -1.1630 8 8 5.3264 -0.2661 -1.9181 9 7 6.8169 -1.8135 -1.3651 10 6 7.6762 -1.4538 -2.4956 11 1 7.6142 -0.3846 -2.6986 12 6 9.1416 -1.8730 -2.2220 13 6 9.4459 -2.8915 -3.3616 14 1 10.5015 -3.0455 -3.5854 15 6 8.6396 -4.1770 -3.0060 16 6 7.1665 -3.7643 -3.2835 17 6 7.2920 -2.2878 -3.7666 18 1 6.4532 -1.8987 -4.3436 19 7 8.6142 -2.3294 -4.4788 20 6 8.9570 -1.9623 -5.7528 21 1 9.9968 -1.8447 -6.0195 22 6 7.9676 -1.7358 -6.6998 23 7 8.2449 -1.0545 -7.7912 24 14 6.2426 -2.3980 -6.4251 25 1 5.4650 -1.4305 -5.6099 26 1 5.5724 -2.5921 -7.7359 27 1 6.3193 -3.6978 -5.7111 28 6 2.3031 -1.0942 -0.0062 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9952 2.1577 0.0004 33 1 4.4727 -2.5686 -0.0899 34 1 5.3226 -1.3846 0.9319 35 1 7.0821 -2.5250 -0.7614 36 1 9.2284 -2.3510 -1.2464 37 1 9.8063 -1.0116 -2.2893 38 1 8.9360 -5.0062 -3.6485 39 1 8.7741 -4.4365 -1.9560 40 1 6.5740 -3.8200 -2.3703 41 1 6.7283 -4.3877 -4.0627 42 1 7.5535 -0.8959 -8.4528 43 1 1.9723 -2.1223 -0.0121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095214493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:55 Heat of formation + Delta-G solvation = 108.589261 kcal Electronic energy + Delta-G solvation = -25431.379194 eV Core-core repulsion = 21901.572716 eV Total energy + Delta-G solvation = -3529.806477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30742 -40.17012 -38.54176 -34.09742 -33.75432 -32.44279 -31.66002 -29.86231 -29.57346 -29.00096 -27.68845 -25.62762 -24.01221 -22.17707 -21.41705 -20.61056 -20.29848 -19.77263 -19.02417 -17.39568 -17.08365 -16.97194 -15.92526 -15.58090 -15.46542 -14.70660 -14.41035 -14.24550 -13.71137 -13.54065 -13.42410 -13.17506 -12.99514 -12.86986 -12.48086 -12.40093 -12.18389 -12.04313 -11.91118 -11.44453 -11.28891 -10.99640 -10.90467 -10.56367 -10.51513 -10.27790 -9.99374 -9.82664 -9.61231 -9.32486 -9.28738 -8.98837 -8.56521 -8.37695 -7.21646 -5.92295 -3.22389 1.80657 2.31931 2.65398 2.79656 3.23316 3.37273 3.43880 3.50146 4.36150 4.53815 4.58608 4.66335 4.75460 4.79309 4.95570 5.14939 5.17062 5.17728 5.35003 5.36919 5.56802 5.59034 5.59799 5.71992 5.74250 5.76409 5.88404 5.89036 5.90525 6.05929 6.17455 6.24501 6.37276 6.40047 6.55958 6.61280 6.66797 6.81278 6.85566 6.91283 7.37811 7.59817 7.68986 8.31903 8.32243 8.71203 9.64850 10.22977 11.24269 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.004246 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.716833 B = 6593.551269 C = 7411.577457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.241 4.241 3 C 0.042 3.958 4 N -0.262 5.262 5 N -0.361 5.361 6 C 0.116 3.884 7 C 0.491 3.509 8 O -0.505 6.505 9 N -0.714 5.714 10 C 0.131 3.869 11 H 0.092 0.908 12 C -0.133 4.133 13 C 0.140 3.860 14 H 0.097 0.903 15 C -0.130 4.130 16 C -0.137 4.137 17 C 0.110 3.890 18 H 0.099 0.901 19 N -0.604 5.604 20 C -0.230 4.230 21 H 0.098 0.902 22 C 0.021 3.979 23 N -0.914 5.914 24 Si 0.876 3.124 25 H -0.284 1.284 26 H -0.304 1.304 27 H -0.262 1.262 28 C 0.050 3.950 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.181 0.819 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.263 0.737 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -5.263 20.915 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.253 4.253 3 C -0.146 4.146 4 N -0.082 5.082 5 N -0.144 5.144 6 C -0.010 4.010 7 C 0.274 3.726 8 O -0.378 6.378 9 N -0.368 5.368 10 C 0.025 3.975 11 H 0.110 0.890 12 C -0.173 4.173 13 C 0.032 3.968 14 H 0.115 0.885 15 C -0.170 4.170 16 C -0.176 4.176 17 C 0.002 3.998 18 H 0.116 0.884 19 N -0.326 5.326 20 C -0.357 4.357 21 H 0.115 0.885 22 C -0.177 4.177 23 N -0.558 5.558 24 Si 0.709 3.291 25 H -0.213 1.213 26 H -0.233 1.233 27 H -0.188 1.188 28 C -0.095 4.095 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.071 -4.219 19.960 21.939 hybrid contribution -1.745 -1.001 0.210 2.023 sum -9.816 -5.220 20.170 23.031 Atomic orbital electron populations 1.20028 0.89391 1.01866 1.01533 1.20110 0.96988 0.91929 1.16246 1.23824 0.90069 0.99788 1.00875 1.77499 1.20890 0.88140 1.21665 1.47943 1.04345 1.04870 1.57194 1.21493 0.85565 0.94199 0.99697 1.20473 0.82463 0.83198 0.86453 1.90837 1.71673 1.29462 1.45786 1.46122 1.21507 1.38182 1.30942 1.22758 0.88986 1.00628 0.85088 0.89037 1.23159 0.95069 1.00564 0.98503 1.22954 0.95531 0.90958 0.87323 0.88538 1.23064 0.95968 0.98847 0.99100 1.23202 0.96462 0.98057 0.99905 1.23751 0.91185 0.93556 0.91315 0.88418 1.46784 1.03620 1.72663 1.09570 1.18634 0.94572 1.39683 0.82775 0.88485 1.24815 0.97538 0.99616 0.95772 1.69772 1.33911 1.40777 1.11320 0.87087 0.85948 0.80543 0.75559 1.21320 1.23277 1.18789 1.22277 0.83867 1.00035 1.03325 0.92165 0.92338 0.91971 0.80242 0.85992 0.86980 0.77049 0.91780 0.90968 0.92069 0.92697 0.92693 0.91716 0.92684 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.37 36.00 0.37 -0.20 16 2 C -0.24 -2.76 6.10 -105.05 -0.64 -3.40 16 3 C 0.04 0.55 11.96 -17.37 -0.21 0.34 16 4 N -0.26 -4.18 11.64 30.62 0.36 -3.83 16 5 N -0.36 -4.79 3.40 -62.55 -0.21 -5.01 16 6 C 0.12 1.18 6.99 -5.19 -0.04 1.15 16 7 C 0.49 7.42 7.86 -10.99 -0.09 7.34 16 8 O -0.50 -10.72 15.38 5.56 0.09 -10.64 16 9 N -0.71 -9.57 3.76 -50.89 -0.19 -9.76 16 10 C 0.13 2.34 3.17 -64.90 -0.21 2.14 16 11 H 0.09 1.95 7.60 -51.93 -0.39 1.56 16 12 C -0.13 -2.03 6.22 -24.24 -0.15 -2.18 16 13 C 0.14 2.48 5.43 -62.82 -0.34 2.13 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 C -0.13 -2.01 6.49 -23.89 -0.16 -2.16 16 16 C -0.14 -2.39 6.17 -23.89 -0.15 -2.54 16 17 C 0.11 2.35 3.45 -62.26 -0.21 2.14 16 18 H 0.10 2.47 3.52 -51.93 -0.18 2.29 16 19 N -0.60 -14.17 2.78 -145.27 -0.40 -14.58 16 20 C -0.23 -6.52 10.97 -15.06 -0.17 -6.68 16 21 H 0.10 2.88 8.06 -52.49 -0.42 2.46 16 22 C 0.02 0.62 5.50 -17.43 -0.10 0.52 16 23 N -0.91 -28.93 13.97 55.49 0.78 -28.15 16 24 Si 0.88 23.30 24.69 -169.99 -4.20 19.11 16 25 H -0.28 -7.82 6.37 56.52 0.36 -7.46 16 26 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 27 H -0.26 -6.51 4.93 56.52 0.28 -6.24 16 28 C 0.05 0.55 11.36 -17.22 -0.20 0.36 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.63 7.99 -40.82 -0.33 3.31 16 36 H 0.06 0.74 7.41 -51.93 -0.38 0.36 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 40 H 0.05 0.77 6.53 -51.93 -0.34 0.43 16 41 H 0.06 1.26 6.30 -51.93 -0.33 0.93 16 42 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 43 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -38.33 340.79 -7.23 -45.56 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.31 Total: 3.21 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.27 Total: -1.05 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.32 Total: -61.33 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.20 Total: 19.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.33 -7.23 -45.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095214493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.152 kcal (2) G-P(sol) polarization free energy of solvation -38.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds