Wall clock time and date at job start Fri Apr 10 2020 17:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04393 * 2 1 4 4 N 1.30836 * 108.20367 * 179.97438 * 3 2 1 5 5 N 1.40086 * 108.20449 * 0.02562 * 4 3 2 6 6 C 1.46510 * 126.03655 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47008 * 305.02886 * 6 5 4 8 8 O 1.21282 * 120.00631 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00429 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.56125 * 33.56502 * 10 9 7 12 12 C 1.54856 * 110.62803 * 156.46790 * 10 9 7 13 13 C 1.55839 * 103.44743 * 118.64879 * 12 10 9 14 14 H 1.08998 * 115.56678 * 158.81261 * 13 12 10 15 15 C 1.55852 * 105.73860 * 287.98856 * 13 12 10 16 16 C 1.55480 * 103.32850 * 71.92578 * 15 13 12 17 17 C 1.55852 * 103.32692 * 359.97438 * 16 15 13 18 18 H 1.08994 * 116.12990 * 159.23659 * 17 16 15 19 19 N 1.50238 * 101.04814 * 33.02455 * 17 16 15 20 20 C 1.36946 * 130.83683 * 126.06832 * 19 17 16 21 21 H 1.07993 * 119.99802 * 165.56142 * 20 19 17 22 22 C 1.38807 * 119.99941 * 345.83364 * 20 19 17 23 23 N 1.31617 * 120.00008 * 161.91824 * 22 20 19 24 24 Si 1.86809 * 120.00023 * 341.92065 * 22 20 19 25 25 H 1.48499 * 109.46989 * 85.66921 * 24 22 20 26 26 H 1.48494 * 109.46977 * 205.66965 * 24 22 20 27 27 H 1.48497 * 109.46840 * 325.67047 * 24 22 20 28 28 C 1.34943 * 107.92597 * 0.26135 * 5 4 3 29 29 H 1.08998 * 109.47443 * 90.01723 * 1 2 3 30 30 H 1.08997 * 109.47408 * 210.02798 * 1 2 3 31 31 H 1.09001 * 109.46844 * 330.02135 * 1 2 3 32 32 H 1.07994 * 125.89658 * 0.02652 * 3 2 1 33 33 H 1.08996 * 109.47040 * 185.02328 * 6 5 4 34 34 H 1.08997 * 109.46695 * 65.02618 * 6 5 4 35 35 H 0.97003 * 119.99500 * 359.97438 * 9 7 6 36 36 H 1.08994 * 110.62460 * 0.15503 * 12 10 9 37 37 H 1.09006 * 110.62115 * 237.13544 * 12 10 9 38 38 H 1.09003 * 110.62560 * 190.50165 * 15 13 12 39 39 H 1.08994 * 110.62657 * 313.51984 * 15 13 12 40 40 H 1.09000 * 110.60728 * 241.58818 * 16 15 13 41 41 H 1.08994 * 110.89701 * 118.55020 * 16 15 13 42 42 H 0.97002 * 120.00031 * 180.02562 * 23 22 20 43 43 H 1.08000 * 126.12865 * 179.73768 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0006 5 7 3.5843 -0.6707 0.0003 6 6 4.7745 -1.5251 0.0003 7 6 5.6582 -1.1554 -1.1630 8 8 5.3264 -0.2661 -1.9181 9 7 6.8169 -1.8135 -1.3651 10 6 7.6762 -1.4538 -2.4956 11 1 7.6142 -0.3846 -2.6986 12 6 9.1416 -1.8730 -2.2220 13 6 9.4459 -2.8915 -3.3616 14 1 10.5015 -3.0455 -3.5854 15 6 8.6396 -4.1770 -3.0060 16 6 7.1665 -3.7643 -3.2835 17 6 7.2920 -2.2878 -3.7666 18 1 6.4532 -1.8987 -4.3436 19 7 8.6142 -2.3294 -4.4788 20 6 8.9570 -1.9623 -5.7528 21 1 9.9968 -1.8447 -6.0195 22 6 7.9676 -1.7358 -6.6998 23 7 8.2449 -1.0545 -7.7912 24 14 6.2426 -2.3980 -6.4251 25 1 5.4650 -1.4305 -5.6099 26 1 5.5724 -2.5921 -7.7359 27 1 6.3193 -3.6978 -5.7111 28 6 2.3031 -1.0942 -0.0062 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9952 2.1577 0.0004 33 1 4.4727 -2.5686 -0.0899 34 1 5.3226 -1.3846 0.9319 35 1 7.0821 -2.5250 -0.7614 36 1 9.2284 -2.3510 -1.2464 37 1 9.8063 -1.0116 -2.2893 38 1 8.9360 -5.0062 -3.6485 39 1 8.7741 -4.4365 -1.9560 40 1 6.5740 -3.8200 -2.3703 41 1 6.7283 -4.3877 -4.0627 42 1 7.5535 -0.8959 -8.4528 43 1 1.9723 -2.1223 -0.0121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095214493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:54 Heat of formation + Delta-G solvation = 79.112560 kcal Electronic energy + Delta-G solvation = -25432.657399 eV Core-core repulsion = 21901.572716 eV Total energy + Delta-G solvation = -3531.084683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21300 -41.52512 -39.87459 -35.55453 -34.67572 -34.41520 -32.49253 -31.47903 -31.09368 -30.22297 -28.81199 -26.52831 -25.84713 -23.34966 -22.69700 -21.82953 -21.38256 -21.04635 -20.43429 -18.98065 -18.51987 -18.05496 -17.54636 -16.77505 -16.56349 -16.06573 -15.63165 -15.49359 -15.26739 -15.04709 -14.59493 -14.24781 -14.11173 -13.97203 -13.74977 -13.61878 -13.42848 -13.29051 -13.04188 -12.84456 -12.69282 -12.65336 -12.52986 -12.22648 -11.84104 -11.49266 -11.45771 -11.37736 -11.13315 -11.03819 -10.92237 -10.32803 -10.07509 -9.21987 -9.18582 -8.21717 -5.43289 0.93262 1.20819 1.22668 1.33988 1.53504 1.54033 1.90994 2.14421 2.34737 2.96482 3.16273 3.60729 3.72024 3.77903 3.85017 3.96003 4.01600 4.15468 4.20740 4.25517 4.32149 4.42895 4.49970 4.54178 4.61969 4.67196 4.74499 4.89818 4.93574 4.99877 5.00604 5.11626 5.23285 5.24776 5.32923 5.34093 5.39059 5.59477 5.62403 5.75093 6.06834 6.12652 6.56739 6.58365 6.78324 7.27778 7.43920 8.18338 8.99321 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.004246 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.716833 B = 6593.551269 C = 7411.577457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.257 4.257 3 C 0.026 3.974 4 N -0.322 5.322 5 N -0.372 5.372 6 C 0.119 3.881 7 C 0.486 3.514 8 O -0.577 6.577 9 N -0.692 5.692 10 C 0.143 3.857 11 H 0.041 0.959 12 C -0.116 4.116 13 C 0.130 3.870 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.089 3.911 18 H 0.051 0.949 19 N -0.635 5.635 20 C -0.202 4.202 21 H 0.071 0.929 22 C -0.048 4.048 23 N -0.966 5.966 24 Si 0.938 3.062 25 H -0.310 1.310 26 H -0.316 1.316 27 H -0.232 1.232 28 C 0.052 3.948 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.175 0.825 34 H 0.147 0.853 35 H 0.424 0.576 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.257 0.743 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -8.989 25.607 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.268 4.268 3 C -0.161 4.161 4 N -0.143 5.143 5 N -0.155 5.155 6 C -0.005 4.005 7 C 0.272 3.728 8 O -0.455 6.455 9 N -0.347 5.347 10 C 0.036 3.964 11 H 0.060 0.940 12 C -0.155 4.155 13 C 0.025 3.975 14 H 0.121 0.879 15 C -0.154 4.154 16 C -0.168 4.168 17 C -0.017 4.017 18 H 0.069 0.931 19 N -0.359 5.359 20 C -0.330 4.330 21 H 0.089 0.911 22 C -0.241 4.241 23 N -0.615 5.615 24 Si 0.771 3.229 25 H -0.240 1.240 26 H -0.246 1.246 27 H -0.156 1.156 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.209 0.791 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.662 -8.033 24.774 27.447 hybrid contribution -1.476 0.225 -1.143 1.880 sum -10.138 -7.808 23.632 26.874 Atomic orbital electron populations 1.20063 0.87347 1.03289 1.01703 1.20568 0.98559 0.91509 1.16184 1.24250 0.90117 1.01250 1.00446 1.77400 1.22427 0.90446 1.24009 1.48215 1.05877 1.04213 1.57225 1.21869 0.84340 0.96085 0.98179 1.21489 0.82688 0.81822 0.86840 1.90830 1.73300 1.32649 1.48682 1.45789 1.20529 1.38648 1.29765 1.22205 0.91448 0.97301 0.85483 0.94046 1.23092 0.92292 0.99891 1.00242 1.23364 0.95749 0.92794 0.85559 0.87879 1.23029 0.93076 0.96709 1.02573 1.23164 0.98794 0.93849 1.00955 1.23852 0.88792 0.97050 0.92056 0.93130 1.46982 1.06141 1.73728 1.09044 1.18643 0.93252 1.36235 0.84900 0.91113 1.25417 1.00946 1.01442 0.96308 1.69905 1.34767 1.43959 1.12896 0.86102 0.81736 0.80708 0.74323 1.23987 1.24577 1.15598 1.23015 0.83005 1.01806 1.01455 0.92511 0.90328 0.91212 0.79121 0.80774 0.83562 0.73648 0.85998 0.91950 0.92555 0.86804 0.88301 0.93913 0.93379 0.76979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.37 71.24 0.74 -0.21 16 2 C -0.26 -5.47 6.10 -20.14 -0.12 -5.59 16 3 C 0.03 0.68 11.96 85.24 1.02 1.70 16 4 N -0.32 -10.27 11.64 -57.03 -0.66 -10.94 16 5 N -0.37 -8.97 3.40 -351.80 -1.20 -10.17 16 6 C 0.12 1.88 6.99 85.63 0.60 2.48 16 7 C 0.49 13.51 7.86 87.65 0.69 14.20 16 8 O -0.58 -25.00 15.38 -3.04 -0.05 -25.05 16 9 N -0.69 -15.71 3.76 -433.30 -1.63 -17.34 16 10 C 0.14 4.88 3.17 46.96 0.15 5.03 16 11 H 0.04 1.83 7.60 -2.39 -0.02 1.82 16 12 C -0.12 -3.07 6.22 32.21 0.20 -2.87 16 13 C 0.13 4.18 5.43 46.24 0.25 4.43 16 14 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 15 C -0.12 -2.87 6.49 32.43 0.21 -2.66 16 16 C -0.13 -3.94 6.17 32.43 0.20 -3.74 16 17 C 0.09 3.75 3.45 46.58 0.16 3.91 16 18 H 0.05 2.63 3.52 -2.39 -0.01 2.62 16 19 N -0.63 -29.67 2.78 -613.51 -1.70 -31.37 16 20 C -0.20 -11.83 10.97 84.03 0.92 -10.91 16 21 H 0.07 4.41 8.06 -2.91 -0.02 4.39 16 22 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 23 N -0.97 -64.94 13.97 21.65 0.30 -64.63 16 24 Si 0.94 51.21 24.69 68.60 1.69 52.90 16 25 H -0.31 -17.92 6.37 99.48 0.63 -17.29 16 26 H -0.32 -17.53 7.11 99.48 0.71 -16.82 16 27 H -0.23 -11.28 4.93 99.48 0.49 -10.79 16 28 C 0.05 0.99 11.36 83.54 0.95 1.94 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.17 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 4.70 7.99 -92.71 -0.74 3.96 16 36 H 0.12 1.87 7.41 -2.39 -0.02 1.86 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 40 H 0.10 2.12 6.53 -2.39 -0.02 2.11 16 41 H 0.04 1.51 6.30 -2.39 -0.02 1.49 16 42 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 43 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -96.66 340.79 3.19 -93.47 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.00 Total: 7.95 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.43 Total: 5.17 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -4.89 Total: -134.44 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.69 Total: 52.90 kcal Total: -96.66 3.19 -93.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095214493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.581 kcal (2) G-P(sol) polarization free energy of solvation -96.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds