Wall clock time and date at job start Fri Apr 10 2020 17:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32156 * 120.53525 * 2 1 4 4 C 1.31865 * 120.96747 * 179.97438 * 3 2 1 5 5 N 1.31885 * 122.09389 * 0.02562 * 4 3 2 6 6 C 1.32134 * 120.96600 * 359.72472 * 5 4 3 7 7 C 1.39929 * 120.53489 * 179.97438 * 2 1 3 8 8 C 1.47827 * 120.94316 * 359.97438 * 7 2 1 9 9 O 1.21550 * 120.00047 * 42.19642 * 8 7 2 10 10 N 1.34780 * 119.99671 * 221.92913 * 8 7 2 11 11 C 1.48119 * 127.02987 * 175.22307 * 10 8 7 12 12 C 1.54592 * 103.42020 * 219.28158 * 11 10 8 13 13 H 1.09005 * 110.57808 * 81.17202 * 12 11 10 14 14 C 1.53007 * 110.99014 * 204.37547 * 12 11 10 15 15 N 1.46500 * 109.46787 * 288.65271 * 14 12 11 16 16 C 1.36944 * 119.99849 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99490 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99685 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00417 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99518 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47398 * 59.99731 * 20 18 16 22 22 H 1.48503 * 109.47084 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47184 * 299.99942 * 20 18 16 24 24 C 1.54617 * 102.91732 * 322.86880 * 12 11 10 25 25 H 1.09000 * 110.32747 * 262.81193 * 24 12 11 26 26 C 1.52994 * 110.41582 * 140.63173 * 24 12 11 27 27 C 1.47486 * 127.03631 * 355.53321 * 10 8 7 28 28 H 1.08996 * 109.46959 * 264.06286 * 1 2 3 29 29 H 1.09002 * 109.47261 * 24.06683 * 1 2 3 30 30 H 1.09000 * 109.47149 * 144.06797 * 1 2 3 31 31 H 1.07994 * 118.94900 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.53900 * 180.28859 * 6 5 4 33 33 H 1.09000 * 110.66665 * 337.76640 * 11 10 8 34 34 H 1.09002 * 110.65973 * 100.88592 * 11 10 8 35 35 H 1.09002 * 109.47079 * 48.65112 * 14 12 11 36 36 H 1.08993 * 109.47372 * 168.65543 * 14 12 11 37 37 H 0.97000 * 120.00242 * 0.02562 * 15 14 12 38 38 H 0.96994 * 119.99946 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47308 * 302.87931 * 26 24 12 40 40 H 1.09004 * 109.47210 * 62.87470 * 26 24 12 41 41 H 1.09003 * 109.47347 * 182.87338 * 26 24 12 42 42 H 1.08996 * 109.91180 * 273.88473 * 27 10 8 43 43 H 1.08996 * 109.90878 * 35.16217 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1482 0.0005 5 7 4.2062 0.0362 0.0005 6 6 3.6165 -1.1462 0.0055 7 6 2.2180 -1.2052 0.0005 8 6 1.5121 -2.5041 0.0017 9 8 0.5364 -2.6662 -0.7049 10 7 1.9537 -3.5103 0.7822 11 6 1.3156 -4.8324 0.9791 12 6 1.5189 -5.1079 2.4867 13 1 0.7657 -4.5855 3.0766 14 6 1.4871 -6.6095 2.7786 15 7 0.1173 -7.1072 2.6287 16 6 -0.1569 -8.4319 2.8411 17 1 0.6366 -9.1097 3.1193 18 6 -1.4547 -8.9035 2.6986 19 7 -2.4217 -8.0774 2.3599 20 14 -1.8288 -10.7105 2.9889 21 1 -1.4661 -11.0735 4.3825 22 1 -3.2776 -10.9566 2.7749 23 1 -1.0403 -11.5378 2.0407 24 6 2.9261 -4.5273 2.7574 25 1 3.6747 -5.3189 2.7264 26 6 2.9592 -3.8184 4.1128 27 6 3.1676 -3.5178 1.6197 28 1 -0.3633 -0.1063 1.0221 29 1 -0.3634 0.9383 -0.4191 30 1 -0.3633 -0.8321 -0.6031 31 1 4.0127 2.0971 0.0009 32 1 4.2039 -2.0524 0.0102 33 1 0.2538 -4.7870 0.7370 34 1 1.8155 -5.5937 0.3803 35 1 2.1412 -7.1296 2.0787 36 1 1.8293 -6.7889 3.7977 37 1 -0.5952 -6.4984 2.3784 38 1 -3.3285 -8.4069 2.2607 39 1 2.1981 -3.0383 4.1336 40 1 2.7613 -4.5401 4.9053 41 1 3.9417 -3.3716 4.2654 42 1 4.0270 -3.8273 1.0250 43 1 3.3384 -2.5245 2.0347 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105861907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:10 Heat of formation + Delta-G solvation = 4.895515 kcal Electronic energy + Delta-G solvation = -24880.260401 eV Core-core repulsion = 21345.957426 eV Total energy + Delta-G solvation = -3534.302975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47002 -40.96548 -39.17353 -36.50878 -35.54593 -34.46390 -33.58495 -33.06575 -30.85603 -29.71106 -27.69684 -27.20318 -26.03101 -24.83488 -24.01030 -22.65909 -21.18151 -20.96710 -19.22881 -18.99320 -18.30902 -17.89126 -17.16398 -16.99247 -16.47923 -16.10023 -15.63713 -15.43086 -15.23033 -14.93948 -14.74545 -14.38851 -14.26887 -14.12528 -14.07633 -13.67192 -13.47981 -13.22301 -13.17895 -12.93620 -12.78260 -12.70320 -12.45921 -12.18225 -11.95104 -11.79964 -11.73729 -11.54497 -11.45370 -11.01272 -10.90796 -10.71224 -10.45641 -9.83827 -8.98563 -7.93522 -5.22627 -0.61649 -0.15376 1.43394 1.47938 1.50940 1.57037 1.73589 2.56935 2.57886 2.90012 3.01983 3.21120 3.22936 3.40299 3.51469 3.61034 3.76573 3.81354 4.14952 4.20300 4.24574 4.34516 4.38790 4.50285 4.51296 4.52554 4.60482 4.70253 4.77883 4.81873 4.86992 4.95420 5.02212 5.06223 5.19129 5.24245 5.25752 5.32950 5.49420 5.53132 5.72654 6.28053 6.35230 6.85923 6.88313 7.34371 8.10975 8.32116 9.29882 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.003174 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.970148 B = 8819.242906 C = 9534.667160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.222 3.778 3 N -0.534 5.534 4 C 0.316 3.684 5 N -0.530 5.530 6 C 0.193 3.807 7 C -0.248 4.248 8 C 0.584 3.416 9 O -0.567 6.567 10 N -0.609 5.609 11 C 0.120 3.880 12 C -0.093 4.093 13 H 0.066 0.934 14 C 0.165 3.835 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.090 4.090 25 H 0.110 0.890 26 C -0.139 4.139 27 C 0.096 3.904 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.237 0.763 32 H 0.198 0.802 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.595 17.887 -1.179 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 N -0.249 5.249 4 C 0.030 3.970 5 N -0.244 5.244 6 C 0.026 3.974 7 C -0.256 4.256 8 C 0.373 3.627 9 O -0.447 6.447 10 N -0.340 5.340 11 C -0.002 4.002 12 C -0.112 4.112 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.391 5.391 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.802 3.198 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.109 4.109 25 H 0.128 0.872 26 C -0.196 4.196 27 C -0.025 4.025 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.253 0.747 32 H 0.214 0.786 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.599 18.592 -1.562 25.648 hybrid contribution -1.635 -1.696 -0.062 2.356 sum 15.964 16.896 -1.624 23.301 Atomic orbital electron populations 1.21095 0.87037 1.05551 1.04549 1.22014 0.98334 0.86924 0.85208 1.68488 1.11228 1.28998 1.16210 1.25987 0.86313 0.98532 0.86180 1.68605 1.41183 0.99005 1.15611 1.23935 0.89833 0.97799 0.85796 1.21402 0.97385 0.94672 1.12094 1.17698 0.83146 0.82758 0.79145 1.90766 1.28976 1.82492 1.42467 1.48782 1.26928 1.14148 1.44167 1.22342 0.98027 0.83279 0.96600 1.22333 0.98488 0.96026 0.94396 0.91578 1.20798 0.86094 0.91062 0.98193 1.42624 1.05622 1.06994 1.83813 1.19620 0.93391 0.86873 1.37651 0.90247 1.25585 0.95990 1.02021 1.03375 1.69821 1.00423 1.35653 1.56319 0.85219 0.76203 0.80153 0.78228 1.20224 1.22524 1.20306 1.22094 0.95719 0.97901 0.95179 0.87215 1.21824 1.02626 1.00003 0.95191 1.22715 0.86774 1.01088 0.91949 0.88984 0.88378 0.89309 0.74667 0.78583 0.92935 0.90181 0.95085 0.95117 0.79710 0.94133 0.93676 0.92469 0.89893 0.87727 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.71 71.24 0.69 -2.11 16 2 C 0.22 5.09 6.86 42.92 0.29 5.38 16 3 N -0.53 -10.85 10.36 -187.06 -1.94 -12.79 16 4 C 0.32 4.92 12.27 180.84 2.22 7.14 16 5 N -0.53 -8.94 10.42 -198.96 -2.07 -11.01 16 6 C 0.19 3.32 9.33 85.07 0.79 4.11 16 7 C -0.25 -5.62 5.43 -19.91 -0.11 -5.73 16 8 C 0.58 16.60 7.19 86.78 0.62 17.22 16 9 O -0.57 -20.84 14.85 -3.87 -0.06 -20.90 16 10 N -0.61 -15.34 3.29 -813.51 -2.68 -18.02 16 11 C 0.12 3.72 6.43 86.61 0.56 4.28 16 12 C -0.09 -2.69 2.60 -9.70 -0.03 -2.71 16 13 H 0.07 2.17 7.86 -2.38 -0.02 2.15 16 14 C 0.16 5.99 5.59 86.38 0.48 6.47 16 15 N -0.75 -37.16 5.52 -343.44 -1.90 -39.06 16 16 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 19 N -0.97 -60.25 13.06 21.65 0.28 -59.96 16 20 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C -0.09 -1.67 3.17 -9.90 -0.03 -1.70 16 25 H 0.11 1.71 7.85 -2.39 -0.02 1.69 16 26 C -0.14 -2.32 8.90 71.98 0.64 -1.68 16 27 C 0.10 1.56 5.01 86.53 0.43 2.00 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 2.43 5.67 -2.39 -0.01 2.42 16 31 H 0.24 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.20 2.27 6.26 -2.91 -0.02 2.25 16 33 H 0.05 2.04 7.90 -2.39 -0.02 2.02 16 34 H 0.08 2.45 7.95 -2.39 -0.02 2.43 16 35 H 0.03 1.09 8.00 -2.39 -0.02 1.08 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.37 20.13 7.67 -92.71 -0.71 19.41 16 38 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 1.10 7.51 -2.39 -0.02 1.08 16 43 H 0.09 1.21 6.35 -2.39 -0.02 1.20 16 Total: -1.00 -73.28 352.40 1.86 -71.42 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.32 Total: 26.09 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 7.88 Total: 16.12 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -8.31 Total: -140.84 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.28 1.86 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105861907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.320 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds