Wall clock time and date at job start Fri Apr 10 2020 17:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38549 * 120.01533 * 2 1 4 4 C 1.40068 * 117.81531 * 180.23932 * 3 2 1 5 5 C 1.48135 * 121.14483 * 179.78912 * 4 3 2 6 6 O 1.21519 * 120.00085 * 7.21844 * 5 4 3 7 7 N 1.34785 * 119.99993 * 187.22062 * 5 4 3 8 8 C 1.47424 * 125.64522 * 175.10056 * 7 5 4 9 9 C 1.54914 * 104.82859 * 204.09330 * 8 7 5 10 10 H 1.08996 * 111.00579 * 81.06422 * 9 8 7 11 11 C 1.53005 * 111.00191 * 204.87918 * 9 8 7 12 12 N 1.46495 * 109.46790 * 293.54351 * 11 9 8 13 13 C 1.36944 * 119.99765 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99536 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00271 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99963 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46987 * 90.00145 * 17 15 13 19 19 H 1.48501 * 109.46829 * 210.00078 * 17 15 13 20 20 H 1.48500 * 109.47172 * 329.99620 * 17 15 13 21 21 C 1.55159 * 101.58062 * 322.99030 * 9 8 7 22 22 H 1.08997 * 110.72247 * 277.13989 * 21 9 8 23 23 C 1.53001 * 110.71857 * 153.86754 * 21 9 8 24 24 C 1.47015 * 125.64687 * 355.05841 * 7 5 4 25 25 C 1.39764 * 117.71143 * 359.51389 * 4 3 2 26 26 N 1.31902 * 119.65130 * 0.25322 * 25 4 3 27 27 N 1.28270 * 122.32969 * 359.97438 * 26 25 4 28 28 H 1.08995 * 109.46597 * 270.25468 * 1 2 3 29 29 H 1.08996 * 109.47172 * 30.25622 * 1 2 3 30 30 H 1.09001 * 109.47188 * 150.26037 * 1 2 3 31 31 H 1.07997 * 121.09112 * 0.02562 * 3 2 1 32 32 H 1.08998 * 110.36925 * 322.92510 * 8 7 5 33 33 H 1.08995 * 110.36749 * 85.14870 * 8 7 5 34 34 H 1.08999 * 109.47083 * 53.54619 * 11 9 8 35 35 H 1.09001 * 109.46342 * 173.54614 * 11 9 8 36 36 H 0.96993 * 120.00761 * 0.02562 * 12 11 9 37 37 H 0.96994 * 120.00360 * 179.97438 * 16 15 13 38 38 H 1.09010 * 109.47017 * 305.02187 * 23 21 9 39 39 H 1.09000 * 109.47075 * 65.02056 * 23 21 9 40 40 H 1.08995 * 109.47268 * 185.02647 * 23 21 9 41 41 H 1.08996 * 109.88449 * 298.39584 * 24 7 5 42 42 H 1.09009 * 109.88436 * 59.56264 * 24 7 5 43 43 H 1.08000 * 120.17672 * 180.26892 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 -0.0052 5 6 4.4140 2.3834 -0.0102 6 8 3.8763 3.4651 0.1223 7 7 5.7513 2.3096 -0.1618 8 6 6.6664 3.4586 -0.2871 9 6 7.9035 2.9006 -1.0340 10 1 7.7249 2.8580 -2.1084 11 6 9.1522 3.7275 -0.7210 12 7 8.9981 5.0741 -1.2770 13 6 9.9970 5.9977 -1.1208 14 1 10.8986 5.7333 -0.5881 15 6 9.8509 7.2738 -1.6471 16 7 8.7524 7.5959 -2.2968 17 14 11.2138 8.5335 -1.4347 18 1 12.1573 8.4394 -2.5775 19 1 10.6255 9.8963 -1.3893 20 1 11.9418 8.2663 -0.1683 21 6 8.0141 1.4750 -0.4316 22 1 8.5420 1.4990 0.5217 23 6 8.7063 0.5255 -1.4116 24 6 6.5388 1.0700 -0.2288 25 6 4.2017 -0.1154 0.0005 26 7 3.4483 -1.1981 0.0053 27 7 2.1668 -1.1420 0.0055 28 1 -0.3632 0.0046 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6783 2.1452 0.0004 32 1 6.1995 4.2539 -0.8681 33 1 6.9505 3.8266 0.6987 34 1 9.2832 3.7931 0.3591 35 1 10.0254 3.2490 -1.1645 36 1 8.1887 5.3115 -1.7557 37 1 8.6501 8.4877 -2.6643 38 1 8.1803 0.5418 -2.3663 39 1 9.7379 0.8448 -1.5597 40 1 8.6937 -0.4866 -1.0072 41 1 6.4321 0.5123 0.7015 42 1 6.2025 0.4620 -1.0687 43 1 5.2782 -0.2032 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106052829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:16 Heat of formation + Delta-G solvation = 50.511291 kcal Electronic energy + Delta-G solvation = -24529.995322 eV Core-core repulsion = 20997.670395 eV Total energy + Delta-G solvation = -3532.324927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65766 -40.10135 -38.10117 -35.01706 -34.29401 -33.66771 -32.85018 -31.49040 -29.39257 -28.70695 -26.89216 -26.29016 -24.59353 -24.08734 -22.96516 -21.32274 -20.26418 -20.01154 -18.38945 -17.21891 -17.02397 -16.79999 -16.12621 -15.84082 -15.43194 -14.79808 -14.56318 -14.31936 -14.10441 -13.93777 -13.48714 -13.33249 -13.29141 -13.14799 -12.97930 -12.80416 -12.43448 -12.34608 -12.12961 -11.52890 -11.24860 -11.02491 -10.90452 -10.68835 -10.63145 -10.55235 -10.48815 -10.45284 -10.09739 -10.04671 -9.85059 -9.70623 -8.91904 -8.81899 -6.97341 -5.79388 -3.09214 0.02505 0.49242 2.50800 2.62290 3.28539 3.41905 3.46932 3.48943 3.59805 3.90771 4.01915 4.17620 4.31798 4.46519 4.48601 4.64696 4.69239 4.77472 4.96637 5.07831 5.09176 5.12688 5.31348 5.37680 5.40403 5.45441 5.53055 5.58793 5.61741 5.69285 5.79915 5.87229 5.92317 6.01591 6.07117 6.12443 6.29618 6.30598 6.62011 6.74414 7.25175 7.66644 7.83363 8.30998 8.38660 9.50073 10.05997 10.40047 11.43195 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002960 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.711266 B = 9458.142210 C =10417.724760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.065 3.935 3 C -0.060 4.060 4 C -0.121 4.121 5 C 0.572 3.428 6 O -0.520 6.520 7 N -0.606 5.606 8 C 0.116 3.884 9 C -0.101 4.101 10 H 0.087 0.913 11 C 0.166 3.834 12 N -0.733 5.733 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.098 4.098 22 H 0.092 0.908 23 C -0.142 4.142 24 C 0.085 3.915 25 C 0.027 3.973 26 N -0.238 5.238 27 N -0.234 5.234 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -18.555 4.494 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.135 4.135 5 C 0.359 3.641 6 O -0.396 6.396 7 N -0.339 5.339 8 C -0.005 4.005 9 C -0.120 4.120 10 H 0.106 0.894 11 C 0.038 3.962 12 N -0.378 5.378 13 C -0.374 4.374 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.117 4.117 22 H 0.110 0.890 23 C -0.200 4.200 24 C -0.037 4.037 25 C -0.137 4.137 26 N -0.078 5.078 27 N -0.078 5.078 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.180 0.820 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.551 -19.525 4.636 23.155 hybrid contribution 0.598 2.433 -0.079 2.507 sum -10.953 -17.091 4.557 20.805 Atomic orbital electron populations 1.20720 0.86818 1.04426 1.03949 1.22956 0.99436 0.89825 0.95670 1.22517 0.93126 1.00775 0.92593 1.21243 0.95181 0.95384 1.01694 1.17526 0.80775 0.87882 0.77960 1.90837 1.70880 1.28821 1.49105 1.48405 1.05196 1.09404 1.70853 1.22450 0.88553 0.87929 1.01550 1.22699 0.95562 0.93523 1.00258 0.89427 1.20578 0.92819 0.86309 0.96490 1.42357 1.21133 1.07525 1.66744 1.19196 0.96872 0.91686 1.29599 0.91138 1.24753 0.97585 0.97694 1.00817 1.69655 1.26346 1.20377 1.41594 0.86190 0.81171 0.81147 0.77664 1.21708 1.21757 1.20749 1.22281 0.93114 0.95628 1.00701 0.88977 1.21772 1.01408 0.98272 0.98522 1.22711 0.92470 0.87265 1.01263 1.26056 1.04741 0.88798 0.94091 1.73095 0.99086 1.26941 1.08719 1.72798 1.02227 1.25022 1.07719 0.89544 0.89873 0.89632 0.81956 0.89406 0.90402 0.95997 0.95614 0.78223 0.93436 0.92310 0.91344 0.92377 0.90306 0.90184 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.19 36.01 0.37 -0.24 16 2 C 0.07 0.64 6.86 -82.45 -0.57 0.08 16 3 C -0.06 -0.63 9.43 -38.78 -0.37 -1.00 16 4 C -0.12 -1.43 5.91 -104.58 -0.62 -2.05 16 5 C 0.57 8.19 7.83 -12.19 -0.10 8.10 16 6 O -0.52 -9.31 16.81 5.35 0.09 -9.22 16 7 N -0.61 -7.93 3.33 -171.65 -0.57 -8.50 16 8 C 0.12 1.79 6.06 -2.53 -0.02 1.78 16 9 C -0.10 -1.44 2.55 -88.46 -0.23 -1.67 16 10 H 0.09 1.31 8.04 -51.93 -0.42 0.90 16 11 C 0.17 3.03 5.71 -4.04 -0.02 3.00 16 12 N -0.73 -17.77 5.45 -59.91 -0.33 -18.10 16 13 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 14 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 17 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.10 -0.99 3.02 -88.78 -0.27 -1.26 16 22 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 23 C -0.14 -1.23 9.13 37.16 0.34 -0.89 16 24 C 0.09 0.81 4.48 -3.07 -0.01 0.79 16 25 C 0.03 0.28 9.92 -16.95 -0.17 0.12 16 26 N -0.24 -2.91 11.49 30.78 0.35 -2.56 16 27 N -0.23 -2.81 11.40 33.58 0.38 -2.43 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.16 1.50 7.81 -52.49 -0.41 1.09 16 32 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 33 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 34 H 0.02 0.41 8.10 -51.93 -0.42 -0.02 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 9.89 7.53 -40.82 -0.31 9.58 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 0.52 8.13 -51.92 -0.42 0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.59 6.83 -51.93 -0.35 0.23 16 42 H 0.08 0.65 6.37 -51.92 -0.33 0.32 16 43 H 0.20 1.67 2.97 -52.65 -0.16 1.51 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -33.66 353.87 -7.09 -40.75 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.15 Total: 5.25 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.90 Total: -0.46 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.56 Total: -58.83 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.66 -7.09 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106052829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.262 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds