Wall clock time and date at job start Fri Apr 10 2020 17:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38549 * 120.01533 * 2 1 4 4 C 1.40068 * 117.81531 * 180.23932 * 3 2 1 5 5 C 1.48135 * 121.14483 * 179.78912 * 4 3 2 6 6 O 1.21519 * 120.00085 * 7.21844 * 5 4 3 7 7 N 1.34785 * 119.99993 * 187.22062 * 5 4 3 8 8 C 1.47424 * 125.64522 * 175.10056 * 7 5 4 9 9 C 1.54914 * 104.82859 * 204.09330 * 8 7 5 10 10 H 1.08996 * 111.00579 * 81.06422 * 9 8 7 11 11 C 1.53005 * 111.00191 * 204.87918 * 9 8 7 12 12 N 1.46495 * 109.46790 * 293.54351 * 11 9 8 13 13 C 1.36944 * 119.99765 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99536 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00271 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99963 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46987 * 90.00145 * 17 15 13 19 19 H 1.48501 * 109.46829 * 210.00078 * 17 15 13 20 20 H 1.48500 * 109.47172 * 329.99620 * 17 15 13 21 21 C 1.55159 * 101.58062 * 322.99030 * 9 8 7 22 22 H 1.08997 * 110.72247 * 277.13989 * 21 9 8 23 23 C 1.53001 * 110.71857 * 153.86754 * 21 9 8 24 24 C 1.47015 * 125.64687 * 355.05841 * 7 5 4 25 25 C 1.39764 * 117.71143 * 359.51389 * 4 3 2 26 26 N 1.31902 * 119.65130 * 0.25322 * 25 4 3 27 27 N 1.28270 * 122.32969 * 359.97438 * 26 25 4 28 28 H 1.08995 * 109.46597 * 270.25468 * 1 2 3 29 29 H 1.08996 * 109.47172 * 30.25622 * 1 2 3 30 30 H 1.09001 * 109.47188 * 150.26037 * 1 2 3 31 31 H 1.07997 * 121.09112 * 0.02562 * 3 2 1 32 32 H 1.08998 * 110.36925 * 322.92510 * 8 7 5 33 33 H 1.08995 * 110.36749 * 85.14870 * 8 7 5 34 34 H 1.08999 * 109.47083 * 53.54619 * 11 9 8 35 35 H 1.09001 * 109.46342 * 173.54614 * 11 9 8 36 36 H 0.96993 * 120.00761 * 0.02562 * 12 11 9 37 37 H 0.96994 * 120.00360 * 179.97438 * 16 15 13 38 38 H 1.09010 * 109.47017 * 305.02187 * 23 21 9 39 39 H 1.09000 * 109.47075 * 65.02056 * 23 21 9 40 40 H 1.08995 * 109.47268 * 185.02647 * 23 21 9 41 41 H 1.08996 * 109.88449 * 298.39584 * 24 7 5 42 42 H 1.09009 * 109.88436 * 59.56264 * 24 7 5 43 43 H 1.08000 * 120.17672 * 180.26892 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 -0.0052 5 6 4.4140 2.3834 -0.0102 6 8 3.8763 3.4651 0.1223 7 7 5.7513 2.3096 -0.1618 8 6 6.6664 3.4586 -0.2871 9 6 7.9035 2.9006 -1.0340 10 1 7.7249 2.8580 -2.1084 11 6 9.1522 3.7275 -0.7210 12 7 8.9981 5.0741 -1.2770 13 6 9.9970 5.9977 -1.1208 14 1 10.8986 5.7333 -0.5881 15 6 9.8509 7.2738 -1.6471 16 7 8.7524 7.5959 -2.2968 17 14 11.2138 8.5335 -1.4347 18 1 12.1573 8.4394 -2.5775 19 1 10.6255 9.8963 -1.3893 20 1 11.9418 8.2663 -0.1683 21 6 8.0141 1.4750 -0.4316 22 1 8.5420 1.4990 0.5217 23 6 8.7063 0.5255 -1.4116 24 6 6.5388 1.0700 -0.2288 25 6 4.2017 -0.1154 0.0005 26 7 3.4483 -1.1981 0.0053 27 7 2.1668 -1.1420 0.0055 28 1 -0.3632 0.0046 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6783 2.1452 0.0004 32 1 6.1995 4.2539 -0.8681 33 1 6.9505 3.8266 0.6987 34 1 9.2832 3.7931 0.3591 35 1 10.0254 3.2490 -1.1645 36 1 8.1887 5.3115 -1.7557 37 1 8.6501 8.4877 -2.6643 38 1 8.1803 0.5418 -2.3663 39 1 9.7379 0.8448 -1.5597 40 1 8.6937 -0.4866 -1.0072 41 1 6.4321 0.5123 0.7015 42 1 6.2025 0.4620 -1.0687 43 1 5.2782 -0.2032 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106052829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:16 Heat of formation + Delta-G solvation = 27.154938 kcal Electronic energy + Delta-G solvation = -24531.008130 eV Core-core repulsion = 20997.670395 eV Total energy + Delta-G solvation = -3533.337734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55015 -41.13345 -39.25837 -36.60348 -35.19059 -34.76296 -33.90904 -33.10268 -30.83049 -29.41122 -27.86775 -27.50579 -25.87747 -25.10885 -24.40638 -22.48456 -21.34326 -21.09459 -19.38100 -19.07228 -18.04195 -17.63260 -17.21431 -16.94500 -16.64937 -16.26085 -15.74063 -15.44659 -15.22431 -15.03810 -14.92874 -14.59139 -14.29156 -14.20083 -13.84034 -13.53550 -13.41947 -13.31193 -13.25397 -12.96430 -12.77192 -12.48338 -12.22243 -12.03167 -11.95332 -11.78795 -11.71029 -11.55607 -11.42684 -11.30929 -10.93928 -10.85360 -10.78593 -9.92048 -8.99763 -7.94928 -5.23912 -0.87728 -0.29197 1.46022 1.47341 1.48967 1.57017 1.57323 2.41449 2.55781 2.84585 2.97484 3.21866 3.35114 3.38804 3.41982 3.51569 3.69631 3.75688 4.05685 4.11409 4.15909 4.27578 4.31252 4.40608 4.50624 4.56154 4.59500 4.72628 4.74863 4.79649 4.81284 4.84483 4.96271 4.99793 5.05940 5.17231 5.23438 5.24821 5.36956 5.49782 5.53160 6.19546 6.26997 6.72461 7.33357 7.47792 8.09626 8.30617 9.28668 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002960 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.711266 B = 9458.142210 C =10417.724760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.071 3.929 3 C -0.060 4.060 4 C -0.132 4.132 5 C 0.570 3.430 6 O -0.568 6.568 7 N -0.603 5.603 8 C 0.121 3.879 9 C -0.092 4.092 10 H 0.079 0.921 11 C 0.165 3.835 12 N -0.748 5.748 13 C -0.242 4.242 14 H 0.080 0.920 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.268 1.268 21 C -0.085 4.085 22 H 0.104 0.896 23 C -0.140 4.140 24 C 0.079 3.921 25 C 0.036 3.964 26 N -0.256 5.256 27 N -0.254 5.254 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.036 0.964 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -20.955 5.263 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.074 4.074 3 C -0.090 4.090 4 C -0.146 4.146 5 C 0.358 3.642 6 O -0.448 6.448 7 N -0.334 5.334 8 C -0.002 4.002 9 C -0.112 4.112 10 H 0.098 0.902 11 C 0.039 3.961 12 N -0.391 5.391 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.213 1.213 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.104 4.104 22 H 0.123 0.877 23 C -0.197 4.197 24 C -0.041 4.041 25 C -0.128 4.128 26 N -0.096 5.096 27 N -0.098 5.098 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.115 -22.018 5.428 25.254 hybrid contribution 0.444 3.122 -0.288 3.166 sum -10.671 -18.896 5.140 22.301 Atomic orbital electron populations 1.20881 0.84107 1.05608 1.05241 1.23442 1.01068 0.88727 0.94170 1.22759 0.92901 1.01604 0.91724 1.21086 0.95511 0.94614 1.03434 1.17918 0.81061 0.88152 0.77059 1.90808 1.71822 1.30687 1.51443 1.48415 1.04973 1.09997 1.70007 1.22182 0.89395 0.88197 1.00394 1.22519 0.93036 0.95757 0.99839 0.90247 1.20750 0.95052 0.84117 0.96224 1.42618 1.20066 1.09526 1.66860 1.19648 0.97426 0.92241 1.28039 0.90256 1.25584 0.99924 0.99929 1.01595 1.69823 1.28508 1.20412 1.43482 0.85148 0.78476 0.78122 0.78077 1.21325 1.22587 1.19238 1.22272 0.94038 0.92741 1.01330 0.87745 1.21780 1.00570 0.99269 0.98127 1.23046 0.91279 0.85991 1.03824 1.26299 1.05580 0.87730 0.93145 1.73057 0.99467 1.27505 1.09544 1.72743 1.02435 1.26121 1.08456 0.88029 0.88099 0.89033 0.81139 0.93181 0.91483 0.95514 0.94653 0.79648 0.94137 0.92436 0.92077 0.89450 0.87133 0.88098 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.19 71.24 0.73 -0.25 16 2 C 0.07 1.27 6.86 42.63 0.29 1.56 16 3 C -0.06 -1.19 9.43 22.79 0.22 -0.98 16 4 C -0.13 -2.99 5.91 -19.84 -0.12 -3.11 16 5 C 0.57 16.34 7.83 86.87 0.68 17.02 16 6 O -0.57 -21.12 16.81 -3.77 -0.06 -21.18 16 7 N -0.60 -15.41 3.33 -815.26 -2.71 -18.12 16 8 C 0.12 3.83 6.06 86.86 0.53 4.36 16 9 C -0.09 -2.58 2.55 -9.40 -0.02 -2.61 16 10 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 11 C 0.16 5.94 5.71 86.38 0.49 6.43 16 12 N -0.75 -36.92 5.45 -343.45 -1.87 -38.80 16 13 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 16 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 17 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C -0.08 -1.49 3.02 -9.60 -0.03 -1.51 16 22 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 23 C -0.14 -1.95 9.13 71.98 0.66 -1.30 16 24 C 0.08 1.27 4.48 86.73 0.39 1.65 16 25 C 0.04 0.70 9.92 85.05 0.84 1.54 16 26 N -0.26 -5.77 11.49 -56.52 -0.65 -6.42 16 27 N -0.25 -5.69 11.40 -47.68 -0.54 -6.23 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 3.05 7.81 -2.91 -0.02 3.02 16 32 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 33 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 34 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.37 19.95 7.53 -92.71 -0.70 19.25 16 37 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 1.17 6.83 -2.39 -0.02 1.16 16 42 H 0.10 1.27 6.37 -2.38 -0.02 1.26 16 43 H 0.22 2.92 2.97 -3.06 -0.01 2.91 16 Total: -1.00 -75.37 353.87 2.76 -72.61 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.33 Total: 23.46 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.96 Total: 6.37 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -5.50 Total: -129.38 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.37 2.76 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106052829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.767 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds