Wall clock time and date at job start Fri Apr 10 2020 17:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31911 * 119.03978 * 2 1 4 4 C 1.32174 * 121.03628 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.14288 * 0.02562 * 4 3 2 6 6 C 1.39492 * 118.26378 * 359.97438 * 5 4 3 7 7 C 1.48457 * 120.54552 * 179.97438 * 6 5 4 8 8 O 1.21476 * 120.00299 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99776 * 179.97438 * 7 6 5 10 10 C 1.48120 * 127.03674 * 179.71021 * 9 7 6 11 11 C 1.54593 * 103.42528 * 219.29170 * 10 9 7 12 12 H 1.08996 * 110.57572 * 81.16685 * 11 10 9 13 13 C 1.53000 * 110.98811 * 204.37362 * 11 10 9 14 14 N 1.46502 * 109.46800 * 288.64743 * 13 11 10 15 15 C 1.36935 * 119.99709 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00338 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99778 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00079 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47247 * 60.00408 * 19 17 15 21 21 H 1.48499 * 109.47074 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47294 * 299.99820 * 19 17 15 23 23 C 1.54617 * 102.90941 * 322.86429 * 11 10 9 24 24 H 1.08996 * 110.32747 * 262.80484 * 23 11 10 25 25 C 1.53007 * 110.41204 * 140.63674 * 23 11 10 26 26 C 1.47490 * 127.03432 * 0.03006 * 9 7 6 27 27 N 1.31553 * 119.04314 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47104 * 90.00178 * 1 2 3 29 29 H 1.09003 * 109.46512 * 209.99623 * 1 2 3 30 30 H 1.08993 * 109.47182 * 329.99627 * 1 2 3 31 31 H 1.07995 * 120.42517 * 180.02562 * 4 3 2 32 32 H 1.08004 * 120.86623 * 179.97438 * 5 4 3 33 33 H 1.09008 * 110.65542 * 337.77196 * 10 9 7 34 34 H 1.08993 * 110.65867 * 100.88741 * 10 9 7 35 35 H 1.08997 * 109.47208 * 48.65028 * 13 11 10 36 36 H 1.08995 * 109.46878 * 168.65315 * 13 11 10 37 37 H 0.97001 * 120.00224 * 0.02562 * 14 13 11 38 38 H 0.97001 * 119.99901 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47306 * 302.87172 * 25 23 11 40 40 H 1.08999 * 109.46963 * 62.87370 * 25 23 11 41 41 H 1.08999 * 109.46834 * 182.87309 * 25 23 11 42 42 H 1.08998 * 109.91401 * 273.87446 * 26 9 7 43 43 H 1.09004 * 109.90986 * 34.96243 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0113 0.0005 6 6 3.4761 -1.1894 0.0005 7 6 4.1926 -2.4896 -0.0001 8 8 5.4071 -2.5139 -0.0001 9 7 3.4956 -3.6431 0.0005 10 6 4.0461 -5.0182 -0.0060 11 6 3.0942 -5.7815 -0.9553 12 1 3.3643 -5.6001 -1.9956 13 6 3.1010 -7.2806 -0.6493 14 7 4.3770 -7.8602 -1.0759 15 6 4.6139 -9.1976 -0.9011 16 1 3.8600 -9.8250 -0.4492 17 6 5.8232 -9.7468 -1.3049 18 7 6.7422 -8.9820 -1.8552 19 14 6.1461 -11.5712 -1.0671 20 1 5.1292 -12.3552 -1.8130 21 1 7.5005 -11.9047 -1.5766 22 1 6.0656 -11.9039 0.3779 23 6 1.7146 -5.1629 -0.6319 24 1 1.1739 -5.7920 0.0750 25 6 0.8977 -4.9812 -1.9129 26 6 2.0284 -3.7945 0.0010 27 7 2.1457 -1.1501 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.9825 2.1490 0.0009 32 1 5.2662 0.0164 0.0005 33 1 5.0636 -5.0233 -0.3970 34 1 4.0153 -5.4494 0.9946 35 1 2.9727 -7.4332 0.4223 36 1 2.2847 -7.7645 -1.1856 37 1 5.0543 -7.2966 -1.4815 38 1 7.5870 -9.3659 -2.1377 39 1 1.4553 -4.3607 -2.6145 40 1 0.7057 -5.9553 -2.3626 41 1 -0.0497 -4.4980 -1.6741 42 1 1.6524 -3.7634 1.0236 43 1 1.5728 -2.9972 -0.5864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106991709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:28 Heat of formation + Delta-G solvation = 32.880594 kcal Electronic energy + Delta-G solvation = -24717.964996 eV Core-core repulsion = 21184.875544 eV Total energy + Delta-G solvation = -3533.089451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57500 -39.83718 -37.94493 -34.77734 -34.15327 -33.54992 -32.72053 -31.37169 -29.18363 -28.84783 -26.79905 -26.02469 -24.88154 -23.44157 -22.86889 -21.22707 -20.00982 -19.87637 -18.21609 -17.47273 -16.90978 -16.13060 -15.95692 -15.69439 -15.37552 -14.94580 -14.59773 -14.23995 -14.03873 -13.79548 -13.49963 -13.21427 -13.02600 -12.98007 -12.83679 -12.74945 -12.35931 -12.08728 -11.84125 -11.38414 -11.16928 -11.10789 -11.05474 -10.82534 -10.57801 -10.49172 -10.36733 -10.31272 -10.00474 -9.85785 -9.65102 -9.44037 -8.86105 -8.61011 -6.91173 -5.73935 -3.03347 0.21558 0.56243 2.60946 2.73878 3.45708 3.47241 3.49891 3.50199 3.51260 3.66509 4.15536 4.48814 4.59079 4.65144 4.70226 4.84549 4.97499 5.04392 5.08440 5.18126 5.35072 5.42943 5.53069 5.54518 5.59485 5.60954 5.68834 5.86067 5.90091 5.99838 6.04875 6.08548 6.13450 6.22522 6.24417 6.40992 6.47081 6.54660 6.73135 6.86026 7.47948 7.61243 7.71049 7.99726 8.44271 9.55390 10.12652 10.47023 11.48674 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.003053 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.542638 B = 9168.901373 C =10018.127889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.509 5.509 4 C 0.154 3.846 5 C -0.179 4.179 6 C 0.146 3.854 7 C 0.579 3.421 8 O -0.525 6.525 9 N -0.595 5.595 10 C 0.113 3.887 11 C -0.102 4.102 12 H 0.083 0.917 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.104 4.104 24 H 0.086 0.914 25 C -0.139 4.139 26 C 0.105 3.895 27 N -0.489 5.489 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 20.855 3.787 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.224 5.224 4 C -0.013 4.013 5 C -0.202 4.202 6 C -0.002 4.002 7 C 0.365 3.635 8 O -0.400 6.400 9 N -0.326 5.326 10 C -0.008 4.008 11 C -0.121 4.121 12 H 0.102 0.898 13 C 0.038 3.962 14 N -0.378 5.378 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.123 4.123 24 H 0.105 0.895 25 C -0.196 4.196 26 C -0.018 4.018 27 N -0.207 5.207 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.179 0.821 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.314 20.702 3.839 25.460 hybrid contribution 1.478 -0.829 -0.009 1.695 sum -12.836 19.873 3.830 23.966 Atomic orbital electron populations 1.20608 0.85181 1.04451 1.04161 1.23370 0.98413 0.83133 0.90581 1.68204 1.10470 1.30497 1.13278 1.23353 0.89397 0.98633 0.89960 1.22982 1.04037 0.92898 1.00234 1.21686 0.89830 0.94718 0.94002 1.17360 0.86038 0.81864 0.78269 1.90836 1.12341 1.86196 1.50655 1.48669 1.08684 1.05702 1.69592 1.22632 0.99388 0.78415 1.00407 1.22516 0.93285 0.96405 0.99943 0.89841 1.20623 0.90260 0.88409 0.96948 1.42374 1.14176 1.07287 1.73915 1.19164 0.99367 0.85099 1.33676 0.91225 1.24749 0.96697 0.97914 1.01537 1.69649 1.07127 1.34467 1.46786 0.86269 0.77017 0.85193 0.77695 1.21291 1.21707 1.21279 1.22159 0.96614 0.95494 0.98073 0.89546 1.21803 0.99110 1.02067 0.96614 1.22553 0.79645 0.98224 1.01396 1.68453 1.08717 1.30236 1.13289 0.89372 0.89302 0.89460 0.80582 0.82094 0.89102 0.90290 0.96068 0.95810 0.78220 0.93424 0.92847 0.91997 0.92698 0.91756 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.32 36.01 0.37 -0.16 16 2 C 0.31 3.08 7.64 -157.30 -1.20 1.87 16 3 N -0.51 -5.02 10.32 -10.73 -0.11 -5.13 16 4 C 0.15 1.29 11.31 -17.20 -0.19 1.10 16 5 C -0.18 -1.85 9.72 -38.91 -0.38 -2.22 16 6 C 0.15 1.86 6.76 -82.64 -0.56 1.30 16 7 C 0.58 9.09 7.90 -12.05 -0.10 8.99 16 8 O -0.52 -9.81 16.63 5.39 0.09 -9.72 16 9 N -0.60 -8.89 3.29 -170.86 -0.56 -9.45 16 10 C 0.11 1.88 6.44 -2.31 -0.01 1.87 16 11 C -0.10 -1.63 2.60 -88.93 -0.23 -1.86 16 12 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 13 C 0.17 3.22 5.58 -4.04 -0.02 3.20 16 14 N -0.73 -18.48 5.52 -59.91 -0.33 -18.81 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.10 -1.27 3.17 -89.24 -0.28 -1.55 16 24 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 25 C -0.14 -1.50 8.90 37.16 0.33 -1.17 16 26 C 0.10 1.26 5.76 -2.98 -0.02 1.24 16 27 N -0.49 -5.58 6.80 -7.32 -0.05 -5.63 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.16 1.51 7.74 -52.48 -0.41 1.11 16 33 H 0.09 1.75 7.85 -51.92 -0.41 1.34 16 34 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 35 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.17 5.44 -51.93 -0.28 0.88 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -33.73 357.78 -8.82 -42.55 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.40 Total: 5.87 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.54 Total: 5.20 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.33 Total: -66.84 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.73 -8.82 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106991709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.429 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds