Wall clock time and date at job start Fri Apr 10 2020 17:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31911 * 119.03978 * 2 1 4 4 C 1.32174 * 121.03628 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.14288 * 0.02562 * 4 3 2 6 6 C 1.39492 * 118.26378 * 359.97438 * 5 4 3 7 7 C 1.48457 * 120.54552 * 179.97438 * 6 5 4 8 8 O 1.21476 * 120.00299 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99776 * 179.97438 * 7 6 5 10 10 C 1.48120 * 127.03674 * 179.71021 * 9 7 6 11 11 C 1.54593 * 103.42528 * 219.29170 * 10 9 7 12 12 H 1.08996 * 110.57572 * 81.16685 * 11 10 9 13 13 C 1.53000 * 110.98811 * 204.37362 * 11 10 9 14 14 N 1.46502 * 109.46800 * 288.64743 * 13 11 10 15 15 C 1.36935 * 119.99709 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00338 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99778 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00079 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47247 * 60.00408 * 19 17 15 21 21 H 1.48499 * 109.47074 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47294 * 299.99820 * 19 17 15 23 23 C 1.54617 * 102.90941 * 322.86429 * 11 10 9 24 24 H 1.08996 * 110.32747 * 262.80484 * 23 11 10 25 25 C 1.53007 * 110.41204 * 140.63674 * 23 11 10 26 26 C 1.47490 * 127.03432 * 0.03006 * 9 7 6 27 27 N 1.31553 * 119.04314 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47104 * 90.00178 * 1 2 3 29 29 H 1.09003 * 109.46512 * 209.99623 * 1 2 3 30 30 H 1.08993 * 109.47182 * 329.99627 * 1 2 3 31 31 H 1.07995 * 120.42517 * 180.02562 * 4 3 2 32 32 H 1.08004 * 120.86623 * 179.97438 * 5 4 3 33 33 H 1.09008 * 110.65542 * 337.77196 * 10 9 7 34 34 H 1.08993 * 110.65867 * 100.88741 * 10 9 7 35 35 H 1.08997 * 109.47208 * 48.65028 * 13 11 10 36 36 H 1.08995 * 109.46878 * 168.65315 * 13 11 10 37 37 H 0.97001 * 120.00224 * 0.02562 * 14 13 11 38 38 H 0.97001 * 119.99901 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47306 * 302.87172 * 25 23 11 40 40 H 1.08999 * 109.46963 * 62.87370 * 25 23 11 41 41 H 1.08999 * 109.46834 * 182.87309 * 25 23 11 42 42 H 1.08998 * 109.91401 * 273.87446 * 26 9 7 43 43 H 1.09004 * 109.90986 * 34.96243 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0113 0.0005 6 6 3.4761 -1.1894 0.0005 7 6 4.1926 -2.4896 -0.0001 8 8 5.4071 -2.5139 -0.0001 9 7 3.4956 -3.6431 0.0005 10 6 4.0461 -5.0182 -0.0060 11 6 3.0942 -5.7815 -0.9553 12 1 3.3643 -5.6001 -1.9956 13 6 3.1010 -7.2806 -0.6493 14 7 4.3770 -7.8602 -1.0759 15 6 4.6139 -9.1976 -0.9011 16 1 3.8600 -9.8250 -0.4492 17 6 5.8232 -9.7468 -1.3049 18 7 6.7422 -8.9820 -1.8552 19 14 6.1461 -11.5712 -1.0671 20 1 5.1292 -12.3552 -1.8130 21 1 7.5005 -11.9047 -1.5766 22 1 6.0656 -11.9039 0.3779 23 6 1.7146 -5.1629 -0.6319 24 1 1.1739 -5.7920 0.0750 25 6 0.8977 -4.9812 -1.9129 26 6 2.0284 -3.7945 0.0010 27 7 2.1457 -1.1501 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.9825 2.1490 0.0009 32 1 5.2662 0.0164 0.0005 33 1 5.0636 -5.0233 -0.3970 34 1 4.0153 -5.4494 0.9946 35 1 2.9727 -7.4332 0.4223 36 1 2.2847 -7.7645 -1.1856 37 1 5.0543 -7.2966 -1.4815 38 1 7.5870 -9.3659 -2.1377 39 1 1.4553 -4.3607 -2.6145 40 1 0.7057 -5.9553 -2.3626 41 1 -0.0497 -4.4980 -1.6741 42 1 1.6524 -3.7634 1.0236 43 1 1.5728 -2.9972 -0.5864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106991709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:27 Heat of formation + Delta-G solvation = 10.694909 kcal Electronic energy + Delta-G solvation = -24718.927039 eV Core-core repulsion = 21184.875544 eV Total energy + Delta-G solvation = -3534.051495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41497 -40.98409 -39.21134 -36.50298 -35.14484 -34.27146 -34.03042 -33.06054 -30.75994 -29.45188 -28.00830 -27.21691 -26.15267 -24.90552 -23.90343 -22.59984 -21.20495 -21.00544 -19.33926 -18.93223 -18.22762 -17.34713 -17.02441 -16.67738 -16.54753 -16.16435 -15.88402 -15.47931 -15.30631 -15.16476 -14.85947 -14.42605 -14.38243 -14.06644 -13.66947 -13.50079 -13.37676 -13.19078 -13.12760 -12.90103 -12.71767 -12.48738 -12.21720 -12.03475 -11.97084 -11.94324 -11.75902 -11.67023 -11.50058 -11.39735 -10.92763 -10.62131 -10.31461 -9.81428 -9.00246 -7.94268 -5.23836 -0.67595 -0.15072 1.47013 1.50577 1.52690 1.56660 1.61101 2.56086 2.63830 2.66486 3.00223 3.28198 3.39212 3.57003 3.59668 3.67687 3.80282 3.97340 4.16624 4.26629 4.36480 4.40532 4.46719 4.52044 4.54814 4.73762 4.77612 4.79102 4.83622 4.87209 4.88823 5.01349 5.06522 5.13643 5.20903 5.25311 5.33173 5.39027 5.49479 5.54852 5.71708 6.26935 6.31836 6.72386 6.91933 7.33052 8.09025 8.31118 9.29272 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.003053 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.542638 B = 9168.901373 C =10018.127889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.305 3.695 3 N -0.516 5.516 4 C 0.168 3.832 5 C -0.182 4.182 6 C 0.124 3.876 7 C 0.572 3.428 8 O -0.569 6.569 9 N -0.596 5.596 10 C 0.116 3.884 11 C -0.092 4.092 12 H 0.066 0.934 13 C 0.166 3.834 14 N -0.748 5.748 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.975 3.025 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.277 1.277 23 C -0.093 4.093 24 H 0.104 0.896 25 C -0.135 4.135 26 C 0.109 3.891 27 N -0.497 5.497 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.218 0.782 32 H 0.164 0.836 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 21.976 4.453 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.231 5.231 4 C 0.000 4.000 5 C -0.205 4.205 6 C -0.023 4.023 7 C 0.360 3.640 8 O -0.448 6.448 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.112 4.112 12 H 0.084 0.916 13 C 0.040 3.960 14 N -0.391 5.391 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.113 4.113 24 H 0.122 0.878 25 C -0.192 4.192 26 C -0.013 4.013 27 N -0.215 5.215 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.234 0.766 32 H 0.182 0.818 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.282 21.819 4.524 28.200 hybrid contribution 2.304 -1.073 -0.191 2.549 sum -14.978 20.746 4.333 25.953 Atomic orbital electron populations 1.20758 0.82639 1.05528 1.05265 1.24083 0.99893 0.82633 0.89518 1.68339 1.11007 1.30428 1.13345 1.23986 0.89007 0.99331 0.87667 1.23139 1.04380 0.92866 1.00132 1.21328 0.90781 0.93648 0.96526 1.17918 0.85828 0.83019 0.77280 1.90796 1.14280 1.87024 1.52653 1.48757 1.09963 1.04795 1.69160 1.22412 0.97855 0.80154 1.00235 1.22328 0.95853 0.94366 0.98606 0.91567 1.20781 0.87865 0.90289 0.97084 1.42631 1.15877 1.06619 1.73943 1.19633 0.99366 0.86424 1.32216 0.90206 1.25618 0.96811 1.02397 1.02231 1.69830 1.07463 1.36304 1.48704 0.85183 0.76480 0.80000 0.77929 1.20117 1.22441 1.20302 1.22171 0.94346 0.95383 0.99367 0.87776 1.21784 1.00013 1.02004 0.95386 1.22716 0.77667 0.98320 1.02555 1.68384 1.07873 1.31205 1.13991 0.88076 0.88327 0.88280 0.76602 0.81832 0.92839 0.90345 0.95268 0.94898 0.79750 0.94103 0.93807 0.92439 0.89691 0.90175 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.32 71.24 0.73 -0.05 16 2 C 0.31 5.28 7.64 138.79 1.06 6.34 16 3 N -0.52 -8.80 10.32 -187.87 -1.94 -10.74 16 4 C 0.17 2.41 11.31 84.78 0.96 3.37 16 5 C -0.18 -3.61 9.72 22.71 0.22 -3.39 16 6 C 0.12 3.11 6.76 41.98 0.28 3.40 16 7 C 0.57 18.58 7.90 86.97 0.69 19.27 16 8 O -0.57 -22.60 16.63 -3.64 -0.06 -22.66 16 9 N -0.60 -18.10 3.29 -812.77 -2.68 -20.78 16 10 C 0.12 4.04 6.44 86.61 0.56 4.60 16 11 C -0.09 -2.96 2.60 -9.70 -0.03 -2.99 16 12 H 0.07 2.37 7.86 -2.39 -0.02 2.35 16 13 C 0.17 6.43 5.58 86.38 0.48 6.92 16 14 N -0.75 -38.56 5.52 -343.45 -1.90 -40.46 16 15 C -0.24 -13.79 9.99 84.04 0.84 -12.95 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.08 -4.60 5.50 84.87 0.47 -4.14 16 18 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 19 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C -0.09 -2.11 3.17 -9.90 -0.03 -2.14 16 24 H 0.10 2.05 7.85 -2.39 -0.02 2.03 16 25 C -0.13 -2.59 8.90 71.98 0.64 -1.95 16 26 C 0.11 2.44 5.76 86.53 0.50 2.94 16 27 N -0.50 -10.53 6.80 -177.08 -1.21 -11.73 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.16 3.08 7.74 -2.91 -0.02 3.05 16 33 H 0.05 2.25 7.85 -2.38 -0.02 2.23 16 34 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16 35 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.34 5.44 -2.39 -0.01 2.33 16 Total: -1.00 -75.36 357.78 2.22 -73.15 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.31 Total: 26.24 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.37 Total: 19.22 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -7.43 Total: -144.79 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -75.36 2.22 -73.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106991709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.842 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds