Wall clock time and date at job start Fri Apr 10 2020 17:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47352 * 240.00018 * 3 2 1 5 5 H 1.48501 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47278 * 119.99843 * 3 2 1 7 7 C 1.38809 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.50241 * 130.83753 * 0.02755 * 9 7 2 11 11 H 1.08995 * 116.46150 * 0.02562 * 10 9 7 12 12 C 1.55851 * 101.04882 * 233.98587 * 10 9 7 13 13 C 1.54856 * 103.44548 * 327.06082 * 12 10 9 14 14 C 1.50235 * 130.84107 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.45813 * 359.97438 * 14 9 7 16 16 C 1.55852 * 101.05216 * 233.94891 * 14 9 7 17 17 H 1.09003 * 110.75742 * 208.50861 * 16 14 9 18 18 N 1.46497 * 110.62584 * 85.54903 * 16 14 9 19 19 C 1.34777 * 119.99525 * 159.51875 * 18 16 14 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 N 1.46499 * 109.47198 * 179.97438 * 22 21 19 24 24 C 1.36880 * 126.39550 * 90.00063 * 23 22 21 25 25 C 1.34676 * 106.81687 * 180.02562 * 24 23 22 26 26 N 1.34128 * 108.01763 * 359.97438 * 25 24 23 27 27 C 1.30499 * 109.26073 * 359.72402 * 26 25 24 28 28 C 1.54846 * 103.44300 * 327.05876 * 16 14 9 29 29 H 0.97005 * 120.00015 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.62442 * 85.55348 * 12 10 9 31 31 H 1.08999 * 110.62643 * 208.56726 * 12 10 9 32 32 H 1.09006 * 110.62154 * 118.48706 * 13 12 10 33 33 H 1.08995 * 110.62418 * 241.34738 * 13 12 10 34 34 H 0.97000 * 120.00580 * 339.52621 * 18 16 14 35 35 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 36 36 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 37 37 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 38 38 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 39 39 H 1.07999 * 126.59356 * 0.03471 * 24 23 22 40 40 H 1.07992 * 125.99031 * 180.02562 * 25 24 23 41 41 H 1.07993 * 125.65515 * 180.28800 * 27 26 25 42 42 H 1.08998 * 110.62458 * 118.49339 * 28 16 14 43 43 H 1.09000 * 110.62749 * 241.51002 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1500 -2.6705 -0.0006 11 1 -0.8105 -1.8035 -0.0010 12 6 -0.2743 -3.6100 1.2367 13 6 1.0668 -4.3843 1.2370 14 6 1.8187 -3.8071 -0.0005 15 1 2.8999 -3.9456 -0.0010 16 6 1.0664 -4.3848 -1.2372 17 1 0.8924 -5.4543 -1.1186 18 7 1.8157 -4.1186 -2.4676 19 6 1.5846 -4.8581 -3.5705 20 8 0.7561 -5.7435 -3.5445 21 6 2.3509 -4.5803 -4.8381 22 6 1.8963 -5.5490 -5.9316 23 7 2.6408 -5.2786 -7.1640 24 6 3.8302 -5.8452 -7.5353 25 6 4.1572 -5.3170 -8.7302 26 7 3.1934 -4.4519 -9.0792 27 6 2.2787 -4.4283 -8.1487 28 6 -0.2746 -3.6106 -1.2368 29 1 -0.4850 0.8401 0.0004 30 1 -0.3817 -3.0276 2.1518 31 1 -1.1133 -4.2952 1.1158 32 1 1.6245 -4.1858 2.1523 33 1 0.8927 -5.4538 1.1191 34 1 2.4781 -3.4104 -2.4886 35 1 2.1628 -3.5557 -5.1593 36 1 3.4170 -4.7137 -4.6548 37 1 2.0843 -6.5736 -5.6104 38 1 0.8301 -5.4156 -6.1149 39 1 4.3973 -6.5756 -6.9774 40 1 5.0402 -5.5499 -9.3067 41 1 1.3823 -3.8262 -8.1624 42 1 -0.3822 -3.0287 -2.1521 43 1 -1.1136 -4.2958 -1.1153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110875966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:47 Heat of formation + Delta-G solvation = 52.281361 kcal Electronic energy + Delta-G solvation = -24861.580955 eV Core-core repulsion = 21329.332784 eV Total energy + Delta-G solvation = -3532.248171 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.93420 -41.30269 -39.93683 -35.78522 -35.26193 -34.40445 -31.74009 -30.96811 -30.41499 -30.21634 -29.17400 -26.19761 -25.50918 -22.88388 -22.24190 -21.75695 -21.53428 -21.09135 -20.25111 -18.84850 -18.69035 -17.53586 -17.23772 -16.77544 -16.61687 -16.15194 -15.78401 -15.39668 -15.18056 -14.92565 -14.80190 -14.36177 -14.25008 -13.91647 -13.69669 -13.61999 -13.38337 -12.90013 -12.85300 -12.78853 -12.65919 -12.34871 -12.09981 -11.98396 -11.89516 -11.70438 -11.24209 -10.99136 -10.94090 -10.91993 -10.76839 -10.50879 -9.93104 -9.43125 -8.86751 -7.75692 -5.15132 1.14100 1.49822 1.50752 1.56678 1.63634 1.76067 2.24244 2.44347 2.50906 3.37882 3.45689 3.65265 3.72720 3.85364 3.90530 4.02313 4.09803 4.14645 4.28101 4.37897 4.43229 4.47939 4.50584 4.64012 4.65382 4.71896 4.79796 4.82323 4.84499 4.92347 5.10007 5.18578 5.20112 5.36997 5.39184 5.52703 5.60982 5.72541 5.85347 5.91155 6.26102 6.26733 6.63402 7.06371 7.15615 7.26611 7.73441 8.59096 9.31549 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003569 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.732209 B = 7842.698932 C = 9120.211953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.140 3.860 11 H 0.111 0.889 12 C -0.134 4.134 13 C -0.120 4.120 14 C 0.127 3.873 15 H 0.105 0.895 16 C 0.141 3.859 17 H 0.088 0.912 18 N -0.704 5.704 19 C 0.517 3.483 20 O -0.582 6.582 21 C -0.145 4.145 22 C 0.129 3.871 23 N -0.456 5.456 24 C -0.050 4.050 25 C -0.058 4.058 26 N -0.538 5.538 27 C 0.171 3.829 28 C -0.132 4.132 29 H 0.245 0.755 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.407 0.593 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.202 0.798 40 H 0.182 0.818 41 H 0.222 0.778 42 H 0.034 0.966 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -12.814 -7.904 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.343 4.343 8 H 0.104 0.896 9 N -0.331 5.331 10 C 0.034 3.966 11 H 0.129 0.871 12 C -0.173 4.173 13 C -0.160 4.160 14 C 0.020 3.980 15 H 0.123 0.877 16 C 0.034 3.966 17 H 0.106 0.894 18 N -0.353 5.353 19 C 0.304 3.696 20 O -0.463 6.463 21 C -0.185 4.185 22 C 0.006 3.994 23 N -0.138 5.138 24 C -0.183 4.183 25 C -0.205 4.205 26 N -0.257 5.257 27 C -0.111 4.111 28 C -0.172 4.172 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.219 0.781 40 H 0.199 0.801 41 H 0.239 0.761 42 H 0.053 0.947 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.279 -12.678 -8.462 16.131 hybrid contribution 0.366 1.231 0.885 1.560 sum 5.645 -11.447 -7.577 14.843 Atomic orbital electron populations 1.69739 1.06196 1.24802 1.59022 1.25392 0.96245 1.00261 1.03919 0.85250 0.77044 0.79634 0.77950 1.20492 1.22902 1.20916 1.19307 0.90758 0.82991 1.41293 0.89640 1.46676 1.02158 0.99653 1.84575 1.23517 0.86747 0.95007 0.91376 0.87120 1.22978 0.97428 0.98046 0.98849 1.22851 0.96131 0.99014 0.97968 1.23362 0.97187 0.84457 0.93009 0.87731 1.22417 0.91644 0.98281 0.84246 0.89386 1.46009 1.41688 1.36358 1.11257 1.20712 0.82688 0.80961 0.85246 1.90682 1.36530 1.33982 1.85098 1.21901 1.02490 1.02452 0.91679 1.21562 0.96777 1.00650 0.80378 1.45725 1.18411 1.32559 1.17146 1.23247 0.90242 1.05071 0.99766 1.22705 1.01086 0.99589 0.97102 1.70266 1.04431 1.22005 1.28968 1.25476 1.01944 0.97872 0.85799 1.23292 0.96904 0.97904 0.99115 0.94589 0.94575 0.91123 0.92386 0.89869 0.75823 0.87702 0.86451 0.87447 0.87997 0.78101 0.80071 0.76148 0.94740 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.51 10.48 21.65 0.23 -53.29 16 2 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.97 43.38 29.55 68.60 2.03 45.41 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.21 -10.74 10.59 84.03 0.89 -9.85 16 8 H 0.09 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.61 -27.20 2.99 -615.24 -1.84 -29.03 16 10 C 0.14 6.16 4.68 46.22 0.22 6.38 16 11 H 0.11 5.85 5.57 -2.39 -0.01 5.84 16 12 C -0.13 -4.94 6.44 32.21 0.21 -4.73 16 13 C -0.12 -3.81 6.44 32.23 0.21 -3.60 16 14 C 0.13 4.34 5.04 46.24 0.23 4.57 16 15 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 16 C 0.14 4.55 2.73 46.61 0.13 4.68 16 17 H 0.09 2.74 7.37 -2.39 -0.02 2.72 16 18 N -0.70 -20.00 5.10 -434.91 -2.22 -22.22 16 19 C 0.52 13.31 7.83 87.66 0.69 14.00 16 20 O -0.58 -18.46 15.70 -3.04 -0.05 -18.51 16 21 C -0.14 -2.52 6.02 29.85 0.18 -2.34 16 22 C 0.13 2.09 5.44 86.38 0.47 2.56 16 23 N -0.46 -8.13 2.75 -529.06 -1.46 -9.59 16 24 C -0.05 -0.85 11.58 83.09 0.96 0.12 16 25 C -0.06 -1.20 11.87 83.53 0.99 -0.21 16 26 N -0.54 -13.67 11.25 -200.31 -2.25 -15.92 16 27 C 0.17 3.55 12.56 180.26 2.26 5.82 16 28 C -0.13 -5.01 6.22 32.19 0.20 -4.81 16 29 H 0.24 13.72 8.31 -92.70 -0.77 12.94 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.07 2.27 7.81 -2.39 -0.02 2.25 16 32 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.08 2.15 7.83 -2.39 -0.02 2.14 16 34 H 0.41 11.20 8.62 -92.71 -0.80 10.40 16 35 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.11 1.64 8.10 -2.39 -0.02 1.62 16 38 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.22 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.03 1.45 7.98 -2.39 -0.02 1.43 16 43 H 0.06 2.29 7.81 -2.39 -0.02 2.27 16 Total: -1.00 -67.06 352.31 2.76 -64.30 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.22 Total: 29.26 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 8.10 Total: 9.58 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -7.54 Total: -130.05 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.51 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.06 2.76 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110875966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.584 kcal (2) G-P(sol) polarization free energy of solvation -67.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds