Wall clock time and date at job start Fri Apr 10 2020 17:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 115.55095 * 2 1 4 4 O 1.21286 * 120.00047 * 214.41842 * 3 2 1 5 5 N 1.34773 * 119.99982 * 34.41160 * 3 2 1 6 6 C 1.46503 * 119.99689 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46721 * 180.02562 * 6 5 3 8 8 C 1.40067 * 126.12628 * 259.99822 * 7 6 5 9 9 N 1.31006 * 108.25726 * 180.10939 * 8 7 6 10 10 N 1.39745 * 108.17584 * 0.06986 * 9 8 7 11 11 C 1.34640 * 126.12266 * 80.00174 * 7 6 5 12 12 C 1.51041 * 127.91421 * 359.55471 * 11 7 6 13 13 N 1.47494 * 106.99513 * 169.53145 * 12 11 7 14 14 C 1.36946 * 121.01462 * 222.99429 * 13 12 11 15 15 H 1.08002 * 119.99485 * 332.84122 * 14 13 12 16 16 C 1.38799 * 120.00218 * 152.84646 * 14 13 12 17 17 N 1.31621 * 120.00372 * 341.15897 * 16 14 13 18 18 Si 1.86801 * 119.99987 * 161.16314 * 16 14 13 19 19 H 1.48500 * 109.47422 * 94.36615 * 18 16 14 20 20 H 1.48512 * 109.47059 * 214.36347 * 18 16 14 21 21 H 1.48491 * 109.47489 * 334.36314 * 18 16 14 22 22 C 1.47087 * 117.97714 * 42.97279 * 13 12 11 23 23 C 1.46555 * 127.31895 * 179.51451 * 10 9 8 24 24 C 1.53003 * 117.49908 * 145.66521 * 2 1 3 25 25 C 1.53003 * 117.50074 * 214.32809 * 2 1 3 26 26 H 1.08999 * 109.47339 * 85.58632 * 1 2 3 27 27 H 1.08998 * 109.47556 * 205.58514 * 1 2 3 28 28 H 1.09000 * 109.47217 * 325.58626 * 1 2 3 29 29 H 0.97003 * 120.00170 * 0.02562 * 5 3 2 30 30 H 1.08993 * 109.47499 * 60.00257 * 6 5 3 31 31 H 1.09001 * 109.47215 * 299.99765 * 6 5 3 32 32 H 1.08005 * 125.86963 * 0.04794 * 8 7 6 33 33 H 1.09001 * 109.94413 * 288.90349 * 12 11 7 34 34 H 1.08999 * 109.94698 * 50.15645 * 12 11 7 35 35 H 0.97001 * 120.00662 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.51070 * 56.34624 * 22 13 12 37 37 H 1.08995 * 109.51629 * 176.49825 * 22 13 12 38 38 H 1.09002 * 109.50636 * 281.49928 * 23 10 9 39 39 H 1.08997 * 109.51175 * 41.63935 * 23 10 9 40 40 H 1.09000 * 117.50081 * 215.00000 * 24 2 1 41 41 H 1.08998 * 117.50007 * 0.02922 * 24 2 1 42 42 H 1.08999 * 117.49817 * 359.97438 * 25 2 1 43 43 H 1.09003 * 117.49863 * 145.00057 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6018 2.3830 0.6596 6 6 2.2335 3.7048 0.6591 7 6 1.3929 4.6634 1.4627 8 6 0.4922 5.6040 0.9472 9 7 -0.0451 6.2512 1.9516 10 7 0.4968 5.7451 3.1361 11 6 1.3735 4.7691 2.8048 12 6 2.1635 3.9656 3.8106 13 7 1.9877 4.6215 5.1200 14 6 3.0475 4.7960 5.9696 15 1 3.8871 4.1177 5.9320 16 6 3.0424 5.8445 6.8792 17 7 2.2376 6.8699 6.6971 18 14 4.1781 5.8003 8.3616 19 1 5.4325 6.5299 8.0462 20 1 3.5073 6.4463 9.5185 21 1 4.4973 4.3899 8.6990 22 6 0.6397 5.0828 5.4853 23 6 0.1972 6.1746 4.5049 24 6 2.2364 -1.1207 0.7655 25 6 2.2364 -1.1208 -0.7653 26 1 -0.3634 0.0791 -1.0246 27 1 -0.3634 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 0.7675 2.2442 1.1347 30 1 2.3184 4.0666 -0.3655 31 1 3.2266 3.6331 1.1027 32 1 0.2781 5.7682 -0.0986 33 1 1.7834 2.9448 3.8520 34 1 3.2183 3.9599 3.5360 35 1 2.2338 7.6024 7.3329 36 1 -0.0570 4.2459 5.4369 37 1 0.6549 5.4868 6.4975 38 1 0.7336 7.0982 4.7222 39 1 -0.8749 6.3428 4.6072 40 1 3.1713 -0.8746 1.2690 41 1 1.6112 -1.8582 1.2687 42 1 1.6112 -1.8583 -1.2685 43 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128355541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:51 Heat of formation + Delta-G solvation = 89.733565 kcal Electronic energy + Delta-G solvation = -25146.829648 eV Core-core repulsion = 21616.205526 eV Total energy + Delta-G solvation = -3530.624122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98518 -39.97047 -36.81524 -36.29483 -34.85792 -32.56520 -31.89783 -30.00790 -29.28756 -28.41315 -26.17524 -25.11643 -23.44427 -22.73868 -22.58286 -21.74989 -20.20896 -19.40589 -18.28222 -17.14662 -16.80048 -16.02462 -15.64020 -15.25240 -15.16280 -14.73236 -14.44922 -14.07564 -13.79096 -13.63066 -13.51746 -13.29933 -13.12081 -12.71512 -12.55214 -12.51366 -12.34649 -11.71701 -11.61220 -11.55450 -11.38139 -11.04631 -10.91118 -10.70255 -10.50131 -10.24030 -10.18412 -10.14905 -10.05746 -9.73347 -8.88396 -8.80019 -8.57686 -7.95020 -7.04457 -6.08193 -3.52277 2.43821 2.57420 2.90116 3.14091 3.25183 3.33482 3.35668 3.58881 3.73379 4.28731 4.47581 4.66550 4.71797 4.83789 5.03598 5.10374 5.14197 5.28208 5.42462 5.43115 5.48464 5.51827 5.61186 5.73344 5.74146 5.77715 5.91493 6.00077 6.02142 6.02553 6.14713 6.21379 6.25535 6.48769 6.59470 6.61326 6.92762 7.03074 7.11511 7.56603 7.65436 7.67985 8.09427 8.29800 8.34386 8.87711 9.48752 10.03809 11.01151 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003940 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.802676 B = 7104.341054 C = 8128.667399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.167 4.167 3 C 0.547 3.453 4 O -0.547 6.547 5 N -0.716 5.716 6 C 0.210 3.790 7 C -0.291 4.291 8 C 0.049 3.951 9 N -0.313 5.313 10 N -0.341 5.341 11 C 0.117 3.883 12 C 0.196 3.804 13 N -0.593 5.593 14 C -0.260 4.260 15 H 0.074 0.926 16 C 0.007 3.993 17 N -0.902 5.902 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.152 3.848 23 C 0.116 3.884 24 C -0.150 4.150 25 C -0.146 4.146 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.400 0.600 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.174 0.826 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.258 0.742 36 H 0.017 0.983 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -11.495 -9.790 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.170 4.170 3 C 0.332 3.668 4 O -0.425 6.425 5 N -0.367 5.367 6 C 0.087 3.913 7 C -0.303 4.303 8 C -0.137 4.137 9 N -0.133 5.133 10 N -0.121 5.121 11 C -0.017 4.017 12 C 0.069 3.931 13 N -0.315 5.315 14 C -0.388 4.388 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.025 3.975 23 C -0.006 4.006 24 C -0.187 4.187 25 C -0.184 4.184 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.191 0.809 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.588 -10.179 -9.558 15.040 hybrid contribution 0.597 -0.216 0.674 0.926 sum -4.990 -10.395 -8.884 14.556 Atomic orbital electron populations 1.21344 0.90612 1.02655 1.02486 1.21511 0.95838 0.89871 1.09800 1.19450 0.84273 0.84728 0.78305 1.90681 1.23416 1.84008 1.44425 1.46252 1.27311 1.09987 1.53137 1.19316 0.94353 0.79069 0.98596 1.19405 1.10653 1.08089 0.92185 1.23627 0.96254 0.95383 0.98395 1.77213 1.22899 1.22927 0.90283 1.48818 1.30602 1.26328 1.06362 1.21907 0.92861 0.91875 0.95050 1.20137 0.97243 0.93075 0.82683 1.44283 1.04838 1.68747 1.13671 1.19196 0.99189 1.08349 1.12088 0.90850 1.25044 0.98928 0.94247 1.00955 1.69928 1.41062 1.07286 1.36269 0.86173 0.80034 0.77856 0.82078 1.21251 1.21345 1.20183 1.21194 0.84787 0.92124 0.99379 1.22711 1.00107 1.02915 0.74893 1.23109 1.02210 0.98395 0.94996 1.23019 1.02636 0.98284 0.94431 0.91682 0.91569 0.91782 0.76459 0.91208 0.91212 0.80895 0.93280 0.90047 0.93164 0.96520 0.86676 0.87675 0.91348 0.88195 0.87887 0.88176 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.79 37.15 0.36 -0.56 16 2 C -0.17 -1.75 2.61 -155.66 -0.41 -2.16 16 3 C 0.55 7.54 7.39 -10.98 -0.08 7.46 16 4 O -0.55 -9.48 16.26 5.55 0.09 -9.39 16 5 N -0.72 -9.34 5.45 -61.47 -0.33 -9.67 16 6 C 0.21 3.09 5.95 -5.19 -0.03 3.06 16 7 C -0.29 -4.84 5.46 -105.21 -0.57 -5.42 16 8 C 0.05 0.82 11.97 -17.22 -0.21 0.62 16 9 N -0.31 -6.13 12.61 30.70 0.39 -5.74 16 10 N -0.34 -7.02 4.03 -56.93 -0.23 -7.25 16 11 C 0.12 2.25 6.71 -82.17 -0.55 1.70 16 12 C 0.20 3.87 6.66 -4.48 -0.03 3.84 16 13 N -0.59 -13.68 2.99 -172.97 -0.52 -14.20 16 14 C -0.26 -6.56 9.66 -15.06 -0.15 -6.71 16 15 H 0.07 1.83 7.90 -52.49 -0.41 1.41 16 16 C 0.01 0.19 4.90 -17.43 -0.09 0.10 16 17 N -0.90 -23.54 10.24 55.49 0.57 -22.97 16 18 Si 0.91 20.25 29.59 -169.99 -5.03 15.22 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.15 3.28 5.55 -3.59 -0.02 3.26 16 23 C 0.12 2.40 7.35 -3.88 -0.03 2.37 16 24 C -0.15 -1.40 9.88 -26.69 -0.26 -1.66 16 25 C -0.15 -1.39 9.77 -26.69 -0.26 -1.65 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 28 H 0.06 0.52 6.39 -51.93 -0.33 0.19 16 29 H 0.40 4.72 6.77 -40.82 -0.28 4.44 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.62 8.01 -51.93 -0.42 1.20 16 35 H 0.26 6.57 8.31 -40.82 -0.34 6.24 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.12 2.70 5.90 -51.93 -0.31 2.39 16 38 H 0.11 2.48 7.22 -51.93 -0.37 2.11 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -29.44 353.46 -8.35 -37.79 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.29 Total: 6.63 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.32 Total: 4.26 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.13 Total: -59.84 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.44 -8.35 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128355541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.525 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds