Wall clock time and date at job start Fri Apr 10 2020 17:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 115.55095 * 2 1 4 4 O 1.21286 * 120.00047 * 214.41842 * 3 2 1 5 5 N 1.34773 * 119.99982 * 34.41160 * 3 2 1 6 6 C 1.46503 * 119.99689 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46721 * 180.02562 * 6 5 3 8 8 C 1.40067 * 126.12628 * 259.99822 * 7 6 5 9 9 N 1.31006 * 108.25726 * 180.10939 * 8 7 6 10 10 N 1.39745 * 108.17584 * 0.06986 * 9 8 7 11 11 C 1.34640 * 126.12266 * 80.00174 * 7 6 5 12 12 C 1.51041 * 127.91421 * 359.55471 * 11 7 6 13 13 N 1.47494 * 106.99513 * 169.53145 * 12 11 7 14 14 C 1.36946 * 121.01462 * 222.99429 * 13 12 11 15 15 H 1.08002 * 119.99485 * 332.84122 * 14 13 12 16 16 C 1.38799 * 120.00218 * 152.84646 * 14 13 12 17 17 N 1.31621 * 120.00372 * 341.15897 * 16 14 13 18 18 Si 1.86801 * 119.99987 * 161.16314 * 16 14 13 19 19 H 1.48500 * 109.47422 * 94.36615 * 18 16 14 20 20 H 1.48512 * 109.47059 * 214.36347 * 18 16 14 21 21 H 1.48491 * 109.47489 * 334.36314 * 18 16 14 22 22 C 1.47087 * 117.97714 * 42.97279 * 13 12 11 23 23 C 1.46555 * 127.31895 * 179.51451 * 10 9 8 24 24 C 1.53003 * 117.49908 * 145.66521 * 2 1 3 25 25 C 1.53003 * 117.50074 * 214.32809 * 2 1 3 26 26 H 1.08999 * 109.47339 * 85.58632 * 1 2 3 27 27 H 1.08998 * 109.47556 * 205.58514 * 1 2 3 28 28 H 1.09000 * 109.47217 * 325.58626 * 1 2 3 29 29 H 0.97003 * 120.00170 * 0.02562 * 5 3 2 30 30 H 1.08993 * 109.47499 * 60.00257 * 6 5 3 31 31 H 1.09001 * 109.47215 * 299.99765 * 6 5 3 32 32 H 1.08005 * 125.86963 * 0.04794 * 8 7 6 33 33 H 1.09001 * 109.94413 * 288.90349 * 12 11 7 34 34 H 1.08999 * 109.94698 * 50.15645 * 12 11 7 35 35 H 0.97001 * 120.00662 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.51070 * 56.34624 * 22 13 12 37 37 H 1.08995 * 109.51629 * 176.49825 * 22 13 12 38 38 H 1.09002 * 109.50636 * 281.49928 * 23 10 9 39 39 H 1.08997 * 109.51175 * 41.63935 * 23 10 9 40 40 H 1.09000 * 117.50081 * 215.00000 * 24 2 1 41 41 H 1.08998 * 117.50007 * 0.02922 * 24 2 1 42 42 H 1.08999 * 117.49817 * 359.97438 * 25 2 1 43 43 H 1.09003 * 117.49863 * 145.00057 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6018 2.3830 0.6596 6 6 2.2335 3.7048 0.6591 7 6 1.3929 4.6634 1.4627 8 6 0.4922 5.6040 0.9472 9 7 -0.0451 6.2512 1.9516 10 7 0.4968 5.7451 3.1361 11 6 1.3735 4.7691 2.8048 12 6 2.1635 3.9656 3.8106 13 7 1.9877 4.6215 5.1200 14 6 3.0475 4.7960 5.9696 15 1 3.8871 4.1177 5.9320 16 6 3.0424 5.8445 6.8792 17 7 2.2376 6.8699 6.6971 18 14 4.1781 5.8003 8.3616 19 1 5.4325 6.5299 8.0462 20 1 3.5073 6.4463 9.5185 21 1 4.4973 4.3899 8.6990 22 6 0.6397 5.0828 5.4853 23 6 0.1972 6.1746 4.5049 24 6 2.2364 -1.1207 0.7655 25 6 2.2364 -1.1208 -0.7653 26 1 -0.3634 0.0791 -1.0246 27 1 -0.3634 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 0.7675 2.2442 1.1347 30 1 2.3184 4.0666 -0.3655 31 1 3.2266 3.6331 1.1027 32 1 0.2781 5.7682 -0.0986 33 1 1.7834 2.9448 3.8520 34 1 3.2183 3.9599 3.5360 35 1 2.2338 7.6024 7.3329 36 1 -0.0570 4.2459 5.4369 37 1 0.6549 5.4868 6.4975 38 1 0.7336 7.0982 4.7222 39 1 -0.8749 6.3428 4.6072 40 1 3.1713 -0.8746 1.2690 41 1 1.6112 -1.8582 1.2687 42 1 1.6112 -1.8583 -1.2685 43 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128355541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:50 Heat of formation + Delta-G solvation = 71.746623 kcal Electronic energy + Delta-G solvation = -25147.609620 eV Core-core repulsion = 21616.205526 eV Total energy + Delta-G solvation = -3531.404094 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.43620 -41.00920 -38.03228 -37.66010 -36.09397 -34.26484 -33.47880 -31.57962 -30.58840 -29.33284 -27.79866 -26.51130 -25.06409 -23.89049 -23.34656 -23.25932 -21.63593 -20.52564 -19.77436 -18.69625 -18.00205 -17.33058 -17.03540 -16.92277 -16.28117 -16.21648 -15.63603 -15.49752 -15.17468 -15.08788 -14.86480 -14.66399 -14.10556 -13.97636 -13.80347 -13.42007 -13.39641 -13.20127 -13.04807 -12.99047 -12.75194 -12.65324 -12.33584 -12.23882 -12.01599 -11.87505 -11.60667 -11.46084 -10.93595 -10.80489 -10.68000 -10.11922 -10.02695 -9.39882 -8.86629 -7.99628 -5.46030 0.95731 1.46710 1.50385 1.54964 1.58630 1.61447 1.66559 2.45543 2.49024 2.92012 3.19056 3.42090 3.65332 3.72126 3.77361 3.84244 3.96690 4.06313 4.17226 4.26776 4.36012 4.43347 4.50932 4.63043 4.68998 4.75751 4.79190 4.85550 4.90234 4.96522 5.00879 5.02512 5.16047 5.22472 5.26900 5.31939 5.32810 5.47276 5.60260 5.77688 6.11441 6.23923 6.61826 6.84920 6.99389 7.27746 7.62741 8.16405 9.07273 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003940 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.802676 B = 7104.341054 C = 8128.667399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.176 4.176 3 C 0.542 3.458 4 O -0.589 6.589 5 N -0.707 5.707 6 C 0.217 3.783 7 C -0.272 4.272 8 C 0.061 3.939 9 N -0.337 5.337 10 N -0.360 5.360 11 C 0.097 3.903 12 C 0.200 3.800 13 N -0.609 5.609 14 C -0.272 4.272 15 H 0.072 0.928 16 C -0.035 4.035 17 N -0.922 5.922 18 Si 0.968 3.032 19 H -0.291 1.291 20 H -0.289 1.289 21 H -0.270 1.270 22 C 0.158 3.842 23 C 0.127 3.873 24 C -0.144 4.144 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.409 0.591 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.213 0.787 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.036 0.964 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -13.212 -10.802 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.330 3.670 4 O -0.470 6.470 5 N -0.358 5.358 6 C 0.093 3.907 7 C -0.284 4.284 8 C -0.125 4.125 9 N -0.157 5.157 10 N -0.141 5.141 11 C -0.035 4.035 12 C 0.073 3.927 13 N -0.333 5.333 14 C -0.402 4.402 15 H 0.089 0.911 16 C -0.232 4.232 17 N -0.566 5.566 18 Si 0.796 3.204 19 H -0.218 1.218 20 H -0.215 1.215 21 H -0.195 1.195 22 C 0.031 3.969 23 C 0.005 3.995 24 C -0.181 4.181 25 C -0.181 4.181 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.246 0.754 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.644 -11.921 -10.573 17.264 hybrid contribution 0.948 0.288 0.880 1.326 sum -5.695 -11.633 -9.693 16.178 Atomic orbital electron populations 1.21365 0.88483 1.03707 1.03102 1.21556 0.97231 0.87986 1.11097 1.20063 0.83732 0.85915 0.77295 1.90662 1.25310 1.84816 1.46170 1.46111 1.27428 1.09305 1.52956 1.19180 0.93365 0.79599 0.98559 1.19525 1.09885 1.07818 0.91209 1.24271 0.94815 0.93871 0.99549 1.77202 1.24037 1.23939 0.90526 1.48787 1.31679 1.27213 1.06386 1.21965 0.93337 0.92298 0.95949 1.20140 0.97170 0.93772 0.81590 1.44454 1.04894 1.69111 1.14806 1.19428 0.99719 1.08217 1.12801 0.91065 1.25682 1.00429 0.94115 1.02973 1.70063 1.42293 1.07605 1.36681 0.85274 0.78047 0.77825 0.79276 1.21844 1.21531 1.19455 1.21088 0.84661 0.92723 0.98431 1.22374 1.00652 1.00994 0.75529 1.23204 1.01784 0.98123 0.95015 1.23083 1.02085 0.98265 0.94662 0.91124 0.89589 0.91850 0.75442 0.90225 0.92632 0.77051 0.91289 0.90784 0.93620 0.94637 0.88921 0.91145 0.89414 0.89788 0.85237 0.85488 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.79 71.98 0.70 -0.73 16 2 C -0.18 -3.30 2.61 -52.93 -0.14 -3.44 16 3 C 0.54 14.32 7.39 87.66 0.65 14.96 16 4 O -0.59 -20.27 16.26 -3.05 -0.05 -20.32 16 5 N -0.71 -17.24 5.45 -466.77 -2.54 -19.78 16 6 C 0.22 6.06 5.95 85.63 0.51 6.57 16 7 C -0.27 -8.58 5.46 -20.24 -0.11 -8.70 16 8 C 0.06 1.87 11.97 85.26 1.02 2.89 16 9 N -0.34 -12.72 12.61 -56.80 -0.72 -13.44 16 10 N -0.36 -14.60 4.03 -334.03 -1.35 -15.95 16 11 C 0.10 3.65 6.71 41.31 0.28 3.92 16 12 C 0.20 7.81 6.66 85.55 0.57 8.38 16 13 N -0.61 -28.25 2.99 -701.15 -2.10 -30.35 16 14 C -0.27 -13.89 9.66 84.03 0.81 -13.08 16 15 H 0.07 3.57 7.90 -2.91 -0.02 3.55 16 16 C -0.04 -1.80 4.90 84.86 0.42 -1.39 16 17 N -0.92 -49.19 10.24 21.65 0.22 -48.97 16 18 Si 0.97 42.04 29.59 68.60 2.03 44.07 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.16 6.84 5.55 86.36 0.48 7.32 16 23 C 0.13 5.32 7.35 86.46 0.64 5.96 16 24 C -0.14 -2.37 9.88 30.62 0.30 -2.07 16 25 C -0.14 -2.44 9.77 30.62 0.30 -2.14 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.81 7.90 -2.39 -0.02 0.79 16 28 H 0.06 0.83 6.39 -2.39 -0.02 0.82 16 29 H 0.41 8.70 6.77 -92.71 -0.63 8.08 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.21 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.96 8.01 -2.39 -0.02 2.94 16 35 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 4.44 5.90 -2.39 -0.01 4.43 16 38 H 0.07 3.44 7.22 -2.39 -0.02 3.42 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.13 1.44 8.05 -2.39 -0.02 1.42 16 42 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.84 7.67 -2.39 -0.02 1.82 16 Total: -1.00 -64.06 353.46 2.32 -61.74 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.40 Total: 24.53 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.43 Total: 18.47 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -6.48 Total: -128.49 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -64.06 2.32 -61.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128355541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.489 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds