Wall clock time and date at job start Fri Apr 10 2020 17:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99938 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00215 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21593 * 120.00264 * 359.72086 * 13 12 11 15 15 C 1.47541 * 119.99728 * 179.72391 * 13 12 11 16 16 C 1.40351 * 120.47387 * 179.97438 * 15 13 12 17 17 C 1.36860 * 118.49132 * 180.02562 * 16 15 13 18 18 C 1.39395 * 119.37949 * 359.97438 * 17 16 15 19 19 N 1.38455 * 119.54044 * 179.97438 * 18 17 16 20 20 C 1.48531 * 111.00096 * 62.60288 * 19 18 17 21 21 C 1.54940 * 103.22877 * 159.72460 * 20 19 18 22 22 C 1.54598 * 102.91951 * 322.58621 * 21 20 19 23 23 C 1.47900 * 111.00423 * 180.02562 * 19 18 17 24 24 N 1.32608 * 120.92090 * 0.02562 * 18 17 16 25 25 C 1.31672 * 121.63729 * 359.70030 * 24 18 17 26 26 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 29 29 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 30 30 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 31 31 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 33 33 H 1.07998 * 120.75443 * 359.97438 * 16 15 13 34 34 H 1.07994 * 120.30807 * 179.97438 * 17 16 15 35 35 H 1.09002 * 110.66385 * 278.15856 * 20 19 18 36 36 H 1.08993 * 110.66752 * 41.28648 * 20 19 18 37 37 H 1.08994 * 110.72329 * 204.22763 * 21 20 19 38 38 H 1.09000 * 110.87921 * 81.01338 * 21 20 19 39 39 H 1.09007 * 110.30434 * 263.04161 * 22 21 20 40 40 H 1.08994 * 110.30856 * 140.87396 * 22 21 20 41 41 H 1.09006 * 109.91381 * 333.50533 * 23 19 18 42 42 H 1.08993 * 109.91963 * 94.79929 * 23 19 18 43 43 H 1.08005 * 119.74440 * 180.29020 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0933 -7.2557 -0.0060 15 6 1.8604 -8.5333 -0.0157 16 6 1.1688 -9.7546 -0.0207 17 6 1.8937 -10.9154 -0.0275 18 6 3.2862 -10.8520 -0.0297 19 7 4.0229 -12.0243 -0.0360 20 6 3.7636 -12.8093 -1.2700 21 6 4.9954 -13.7448 -1.3604 22 6 6.1512 -12.8429 -0.8698 23 6 5.4740 -11.7385 -0.0368 24 7 3.9152 -9.6846 -0.0249 25 6 3.2559 -8.5448 -0.0237 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6855 -3.7149 0.8878 29 1 2.6841 -3.7140 -0.8922 30 1 0.4362 -4.7618 -0.8901 31 1 0.4384 -4.7622 0.8899 32 1 2.7665 -6.0883 -0.0044 33 1 0.0890 -9.7778 -0.0184 34 1 1.3916 -11.8715 -0.0310 35 1 2.8462 -13.3896 -1.1711 36 1 3.7137 -12.1539 -2.1395 37 1 5.1639 -14.0623 -2.3894 38 1 4.8759 -14.6086 -0.7064 39 1 6.6778 -12.4075 -1.7191 40 1 6.8405 -13.4154 -0.2493 41 1 5.6604 -10.7647 -0.4900 42 1 5.8564 -11.7554 0.9837 43 1 3.7993 -7.6114 -0.0245 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135405817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:57 Heat of formation + Delta-G solvation = 29.474678 kcal Electronic energy + Delta-G solvation = -23429.801879 eV Core-core repulsion = 19896.564736 eV Total energy + Delta-G solvation = -3533.237143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28562 -39.68200 -38.26797 -35.74599 -33.98583 -33.31117 -32.83291 -31.31565 -29.79797 -29.41240 -27.54390 -24.59816 -24.06269 -23.40178 -21.91613 -21.52542 -21.04392 -20.53630 -18.36462 -17.61372 -17.33107 -16.87877 -16.22477 -15.47896 -15.35252 -15.17521 -14.89706 -14.53703 -14.36900 -14.17697 -13.78041 -13.48948 -13.38001 -13.19351 -13.01867 -12.85157 -12.65385 -12.53465 -11.84790 -11.67062 -11.48089 -11.11846 -11.05616 -10.85030 -10.80331 -10.44259 -10.25638 -10.17778 -10.09179 -9.78974 -9.62688 -9.03717 -8.88203 -8.54415 -7.00514 -5.80020 -3.10956 0.36916 0.95189 2.69379 3.13986 3.18711 3.42652 3.46959 3.48323 3.61855 3.87818 4.10666 4.29928 4.45625 4.53993 4.57285 4.61666 4.75948 4.80752 4.82119 4.96275 5.17139 5.26621 5.32468 5.32983 5.46620 5.48800 5.49198 5.54152 5.60303 5.74447 5.75725 5.83272 5.93429 6.04194 6.11864 6.12954 6.43378 6.68116 6.68306 6.70954 7.49310 7.53589 7.64920 8.21622 8.37448 9.48678 10.03162 10.37900 11.42397 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.002121 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.294804 B =13200.398344 C =13995.006226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.717 5.717 13 C 0.562 3.438 14 O -0.538 6.538 15 C -0.208 4.208 16 C 0.002 3.998 17 C -0.186 4.186 18 C 0.322 3.678 19 N -0.464 5.464 20 C 0.043 3.957 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.033 3.967 24 N -0.521 5.521 25 C 0.162 3.838 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 -30.020 -2.428 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.348 3.652 14 O -0.416 6.416 15 C -0.214 4.214 16 C -0.024 4.024 17 C -0.209 4.209 18 C 0.090 3.910 19 N -0.181 5.181 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.172 4.172 23 C -0.093 4.093 24 N -0.235 5.235 25 C 0.003 3.997 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.296 -30.187 -1.964 31.955 hybrid contribution -0.067 1.413 -0.439 1.481 sum 10.229 -28.774 -2.403 30.632 Atomic orbital electron populations 1.69652 1.05146 1.25985 1.57057 1.24788 0.95578 0.97840 1.02631 0.86216 0.78488 0.83271 0.77864 1.21185 1.21611 1.21181 1.19144 0.91015 0.83845 1.43617 0.91059 1.42172 1.06006 0.99522 1.89727 1.20765 0.93489 0.85682 0.98491 1.21628 0.95474 0.81323 1.02819 1.45844 1.10365 1.05983 1.74660 1.17896 0.87189 0.83279 0.76844 1.90798 1.13276 1.87481 1.50005 1.20922 0.95046 0.94909 1.10550 1.21340 1.01509 0.90180 0.89365 1.21272 0.92788 0.99930 1.06887 1.20126 0.90779 0.88814 0.91325 1.61737 1.07293 1.13764 1.35338 1.23348 1.00195 0.95530 0.89116 1.22519 0.93587 0.98089 1.02019 1.22471 0.98038 0.96801 0.99901 1.22940 0.84851 0.99705 1.01840 1.67606 1.40393 0.97883 1.17621 1.22820 0.90354 0.95917 0.90622 0.93297 0.77974 0.95716 0.95745 0.91034 0.91000 0.76716 0.83258 0.84018 0.88978 0.92411 0.90342 0.90277 0.91048 0.90631 0.89652 0.89878 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.47 5.60 -59.91 -0.34 -18.80 16 10 C 0.14 2.79 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.89 5.79 -4.04 -0.02 1.87 16 12 N -0.72 -9.80 5.51 -61.34 -0.34 -10.14 16 13 C 0.56 8.21 7.77 -12.47 -0.10 8.11 16 14 O -0.54 -9.83 16.41 5.28 0.09 -9.75 16 15 C -0.21 -2.45 5.89 -104.82 -0.62 -3.06 16 16 C 0.00 0.03 9.65 -39.29 -0.38 -0.35 16 17 C -0.19 -1.71 9.38 -39.65 -0.37 -2.08 16 18 C 0.32 3.23 6.20 -155.28 -0.96 2.26 16 19 N -0.46 -3.94 5.28 -169.26 -0.89 -4.83 16 20 C 0.04 0.27 6.03 -1.90 -0.01 0.25 16 21 C -0.12 -0.58 7.06 -24.87 -0.18 -0.76 16 22 C -0.13 -0.72 6.93 -25.36 -0.18 -0.89 16 23 C 0.03 0.26 6.34 -2.74 -0.02 0.24 16 24 N -0.52 -5.62 8.10 -12.14 -0.10 -5.71 16 25 C 0.16 1.67 10.71 -17.13 -0.18 1.49 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.39 10.36 7.67 -40.82 -0.31 10.04 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.40 4.24 6.52 -40.82 -0.27 3.97 16 33 H 0.15 1.51 7.73 -52.49 -0.41 1.10 16 34 H 0.14 0.98 8.01 -52.49 -0.42 0.56 16 35 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 36 H 0.06 0.38 7.99 -51.93 -0.42 -0.03 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.76 6.48 -51.93 -0.34 0.43 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.16 1.28 6.41 -52.48 -0.34 0.94 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -33.82 356.79 -10.05 -43.87 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.27 Total: 7.82 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -3.29 Total: 2.41 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.94 Total: -67.00 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.82 -10.05 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135405817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.346 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds