Wall clock time and date at job start Fri Apr 10 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47439 * 274.46258 * 3 2 1 5 5 H 1.48505 * 109.46795 * 34.45806 * 3 2 1 6 6 H 1.48496 * 109.47296 * 154.45750 * 3 2 1 7 7 C 1.38811 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99960 * 164.49292 * 7 2 1 9 9 N 1.36933 * 120.00019 * 344.49268 * 7 2 1 10 10 C 1.47014 * 121.37277 * 335.97824 * 9 7 2 11 11 C 1.50324 * 109.16180 * 222.97120 * 10 9 7 12 12 C 1.29452 * 123.65509 * 349.02095 * 11 10 9 13 13 C 1.50698 * 117.69363 * 180.86066 * 12 11 10 14 14 C 1.52994 * 109.47364 * 95.00335 * 13 12 11 15 15 N 1.46500 * 109.47573 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00208 * 179.72185 * 15 14 13 17 17 O 1.21279 * 120.00470 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47137 * 180.02562 * 18 16 15 20 20 C 1.36879 * 126.39768 * 89.99976 * 19 18 16 21 21 C 1.34675 * 106.81587 * 179.97438 * 20 19 18 22 22 N 1.34132 * 108.02014 * 359.97438 * 21 20 19 23 23 C 1.30504 * 109.25590 * 359.72624 * 22 21 20 24 24 C 1.49970 * 124.60980 * 1.14050 * 12 11 10 25 25 C 1.47341 * 121.37920 * 156.00548 * 9 7 2 26 26 H 0.97002 * 119.99761 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52435 * 103.06630 * 10 9 7 28 28 H 1.08996 * 109.51933 * 342.87424 * 10 9 7 29 29 H 1.08006 * 118.17430 * 169.00071 * 11 10 9 30 30 H 1.09003 * 109.47560 * 334.99632 * 13 12 11 31 31 H 1.09006 * 109.46856 * 214.99840 * 13 12 11 32 32 H 1.09002 * 109.47707 * 59.99579 * 14 13 12 33 33 H 1.09006 * 109.46730 * 299.99582 * 14 13 12 34 34 H 0.96999 * 120.00069 * 359.97438 * 15 14 13 35 35 H 1.09005 * 109.46816 * 299.99702 * 18 16 15 36 36 H 1.09003 * 109.47195 * 59.99617 * 18 16 15 37 37 H 1.07993 * 126.59550 * 359.95978 * 20 19 18 38 38 H 1.08001 * 125.99138 * 179.97438 * 21 20 19 39 39 H 1.07998 * 125.65102 * 180.29614 * 23 22 21 40 40 H 1.09001 * 109.31064 * 101.01117 * 24 12 11 41 41 H 1.09001 * 109.30980 * 220.43488 * 24 12 11 42 42 H 1.09006 * 109.77163 * 237.78779 * 25 9 7 43 43 H 1.09001 * 109.77286 * 358.58513 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4979 2.6236 0.7922 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2190 -0.2506 9 7 1.3630 -2.3666 0.3160 10 6 0.1447 -2.3657 1.1388 11 6 0.2253 -3.4834 2.1409 12 6 1.1210 -4.4172 2.1035 13 6 1.0648 -5.4845 3.1659 14 6 0.2880 -6.6913 2.6360 15 7 0.2339 -7.7292 3.6685 16 6 -0.4092 -8.8884 3.4258 17 8 -0.9434 -9.0724 2.3527 18 6 -0.4653 -9.9558 4.4882 19 7 -1.2142 -11.1090 3.9828 20 6 -0.6954 -12.1845 3.3137 21 6 -1.7266 -13.0049 3.0358 22 7 -2.8445 -12.4458 3.5224 23 6 -2.5444 -11.3129 4.0964 24 6 2.2142 -4.5085 1.0809 25 6 1.8590 -3.6721 -0.1535 26 1 -0.4850 0.8401 0.0004 27 1 -0.7264 -2.5113 0.5001 28 1 0.0590 -1.4132 1.6617 29 1 -0.5046 -3.5085 2.9366 30 1 0.5648 -5.0905 4.0507 31 1 2.0778 -5.7907 3.4272 32 1 0.7880 -7.0854 1.7512 33 1 -0.7250 -6.3851 2.3747 34 1 0.6577 -7.5805 4.5283 35 1 0.5475 -10.2655 4.7460 36 1 -0.9611 -9.5603 5.3748 37 1 0.3415 -12.3444 3.0577 38 1 -1.6644 -13.9478 2.5127 39 1 -3.2442 -10.6472 4.5796 40 1 3.1446 -4.1414 1.5142 41 1 2.3440 -5.5492 0.7840 42 1 1.0845 -4.1740 -0.7335 43 1 2.7474 -3.5295 -0.7688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161989422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:22 Heat of formation + Delta-G solvation = 68.861597 kcal Electronic energy + Delta-G solvation = -23716.365303 eV Core-core repulsion = 20184.836105 eV Total energy + Delta-G solvation = -3531.529198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31240 -39.91462 -37.97849 -35.64535 -34.28958 -33.66552 -31.49933 -30.01703 -29.73965 -29.21262 -27.72198 -25.27548 -23.19224 -22.60278 -21.67949 -21.58765 -21.09595 -20.66225 -18.03064 -17.77694 -17.60328 -16.25775 -16.04781 -15.58632 -15.12062 -15.04467 -14.74052 -14.21314 -14.15129 -14.02910 -13.80636 -13.62151 -13.44134 -13.41508 -12.87415 -12.63876 -12.27415 -12.09223 -11.65172 -11.48352 -11.09955 -10.95089 -10.75490 -10.68689 -10.34652 -10.29679 -10.22241 -9.85067 -9.78068 -9.57948 -9.38554 -8.72671 -8.68511 -7.98243 -6.75323 -5.81164 -3.19906 1.70110 2.14030 2.29692 2.75892 2.98175 3.05809 3.35717 3.42712 3.44851 4.14770 4.20192 4.43209 4.47502 4.49489 4.58543 4.99154 5.04112 5.17929 5.20597 5.37029 5.44746 5.48738 5.55926 5.70288 5.89955 5.92092 5.94619 6.06782 6.12405 6.16875 6.33997 6.48931 6.50850 6.74604 6.83448 6.86792 7.07793 7.18786 7.28421 7.35979 7.72322 7.77610 7.83773 7.84941 8.36698 9.18154 9.81019 10.39551 11.29289 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.042859 B = 0.002127 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.151939 B =13159.229867 C =13229.139521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.091 4.091 14 C 0.124 3.876 15 N -0.725 5.725 16 C 0.490 3.510 17 O -0.518 6.518 18 C 0.087 3.913 19 N -0.447 5.447 20 C -0.047 4.047 21 C -0.029 4.029 22 N -0.494 5.494 23 C 0.193 3.807 24 C -0.091 4.091 25 C 0.142 3.858 26 H 0.254 0.746 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.203 0.797 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.024 0.976 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -19.835 13.380 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.128 4.128 14 C 0.001 3.999 15 N -0.377 5.377 16 C 0.273 3.727 17 O -0.392 6.392 18 C -0.041 4.041 19 N -0.130 5.130 20 C -0.179 4.179 21 C -0.176 4.176 22 N -0.212 5.212 23 C -0.090 4.090 24 C -0.130 4.130 25 C 0.016 3.984 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.219 0.781 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.492 -20.030 12.548 23.641 hybrid contribution 1.451 1.436 0.525 2.108 sum 1.943 -18.595 13.074 22.813 Atomic orbital electron populations 1.70020 1.05175 1.25461 1.54797 1.25000 0.95402 0.98306 1.01322 0.86243 0.79063 0.83654 0.77604 1.21485 1.21579 1.20512 1.19178 0.92207 0.84361 1.41736 0.91402 1.44142 1.29286 1.01166 1.57308 1.19714 0.88679 0.94753 0.89775 1.23142 0.96561 0.97349 0.99335 1.20212 0.99451 0.96607 0.98282 1.20905 0.99935 0.94044 0.97956 1.21505 1.01490 0.86540 0.90318 1.46051 1.56309 1.16484 1.18881 1.20732 0.79480 0.83322 0.89158 1.90831 1.44289 1.79008 1.25105 1.21688 1.00011 0.85562 0.96790 1.44997 1.08652 1.16029 1.43334 1.22680 1.00880 0.89925 1.04442 1.22270 0.88167 1.01653 1.05538 1.70294 1.29103 1.07762 1.14057 1.24978 0.82861 0.97324 1.03801 1.20788 0.96544 0.98959 0.96688 1.20992 0.97353 0.87249 0.92817 0.93625 0.94371 0.89095 0.89065 0.91461 0.91405 0.91108 0.91078 0.76508 0.86027 0.85775 0.81047 0.81342 0.78069 0.91889 0.92991 0.95810 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 11.08 55.49 0.61 -25.60 16 2 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 3 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.71 9.71 -15.06 -0.15 -6.85 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -14.93 3.01 -173.56 -0.52 -15.45 16 10 C 0.20 4.65 5.23 -5.10 -0.03 4.62 16 11 C -0.14 -2.69 9.47 -35.78 -0.34 -3.03 16 12 C -0.14 -2.36 5.11 -100.99 -0.52 -2.88 16 13 C -0.09 -1.04 5.32 -27.89 -0.15 -1.19 16 14 C 0.12 1.41 5.66 -4.04 -0.02 1.38 16 15 N -0.72 -5.72 5.56 -60.29 -0.33 -6.06 16 16 C 0.49 4.61 7.90 -10.98 -0.09 4.52 16 17 O -0.52 -7.82 16.43 5.56 0.09 -7.73 16 18 C 0.09 0.45 6.63 -5.19 -0.03 0.42 16 19 N -0.45 -3.92 2.24 -119.86 -0.27 -4.19 16 20 C -0.05 -0.43 11.58 -16.56 -0.19 -0.63 16 21 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 22 N -0.49 -6.24 11.25 -14.66 -0.16 -6.41 16 23 C 0.19 1.96 12.56 -90.37 -1.14 0.82 16 24 C -0.09 -1.54 5.95 -28.09 -0.17 -1.71 16 25 C 0.14 2.97 6.59 -3.44 -0.02 2.94 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 29 H 0.09 1.49 7.73 -52.48 -0.41 1.08 16 30 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 31 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 32 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 1.72 8.47 -40.82 -0.35 1.37 16 35 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -36.13 360.94 -9.83 -45.96 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.52 Total: -0.25 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.14 Total: -2.26 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.68 Total: -57.70 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.13 -9.83 -45.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161989422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.818 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds