Wall clock time and date at job start Fri Apr 10 2020 17:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47439 * 274.46258 * 3 2 1 5 5 H 1.48505 * 109.46795 * 34.45806 * 3 2 1 6 6 H 1.48496 * 109.47296 * 154.45750 * 3 2 1 7 7 C 1.38811 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99960 * 164.49292 * 7 2 1 9 9 N 1.36933 * 120.00019 * 344.49268 * 7 2 1 10 10 C 1.47014 * 121.37277 * 335.97824 * 9 7 2 11 11 C 1.50324 * 109.16180 * 222.97120 * 10 9 7 12 12 C 1.29452 * 123.65509 * 349.02095 * 11 10 9 13 13 C 1.50698 * 117.69363 * 180.86066 * 12 11 10 14 14 C 1.52994 * 109.47364 * 95.00335 * 13 12 11 15 15 N 1.46500 * 109.47573 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00208 * 179.72185 * 15 14 13 17 17 O 1.21279 * 120.00470 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47137 * 180.02562 * 18 16 15 20 20 C 1.36879 * 126.39768 * 89.99976 * 19 18 16 21 21 C 1.34675 * 106.81587 * 179.97438 * 20 19 18 22 22 N 1.34132 * 108.02014 * 359.97438 * 21 20 19 23 23 C 1.30504 * 109.25590 * 359.72624 * 22 21 20 24 24 C 1.49970 * 124.60980 * 1.14050 * 12 11 10 25 25 C 1.47341 * 121.37920 * 156.00548 * 9 7 2 26 26 H 0.97002 * 119.99761 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52435 * 103.06630 * 10 9 7 28 28 H 1.08996 * 109.51933 * 342.87424 * 10 9 7 29 29 H 1.08006 * 118.17430 * 169.00071 * 11 10 9 30 30 H 1.09003 * 109.47560 * 334.99632 * 13 12 11 31 31 H 1.09006 * 109.46856 * 214.99840 * 13 12 11 32 32 H 1.09002 * 109.47707 * 59.99579 * 14 13 12 33 33 H 1.09006 * 109.46730 * 299.99582 * 14 13 12 34 34 H 0.96999 * 120.00069 * 359.97438 * 15 14 13 35 35 H 1.09005 * 109.46816 * 299.99702 * 18 16 15 36 36 H 1.09003 * 109.47195 * 59.99617 * 18 16 15 37 37 H 1.07993 * 126.59550 * 359.95978 * 20 19 18 38 38 H 1.08001 * 125.99138 * 179.97438 * 21 20 19 39 39 H 1.07998 * 125.65102 * 180.29614 * 23 22 21 40 40 H 1.09001 * 109.31064 * 101.01117 * 24 12 11 41 41 H 1.09001 * 109.30980 * 220.43488 * 24 12 11 42 42 H 1.09006 * 109.77163 * 237.78779 * 25 9 7 43 43 H 1.09001 * 109.77286 * 358.58513 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4979 2.6236 0.7922 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2190 -0.2506 9 7 1.3630 -2.3666 0.3160 10 6 0.1447 -2.3657 1.1388 11 6 0.2253 -3.4834 2.1409 12 6 1.1210 -4.4172 2.1035 13 6 1.0648 -5.4845 3.1659 14 6 0.2880 -6.6913 2.6360 15 7 0.2339 -7.7292 3.6685 16 6 -0.4092 -8.8884 3.4258 17 8 -0.9434 -9.0724 2.3527 18 6 -0.4653 -9.9558 4.4882 19 7 -1.2142 -11.1090 3.9828 20 6 -0.6954 -12.1845 3.3137 21 6 -1.7266 -13.0049 3.0358 22 7 -2.8445 -12.4458 3.5224 23 6 -2.5444 -11.3129 4.0964 24 6 2.2142 -4.5085 1.0809 25 6 1.8590 -3.6721 -0.1535 26 1 -0.4850 0.8401 0.0004 27 1 -0.7264 -2.5113 0.5001 28 1 0.0590 -1.4132 1.6617 29 1 -0.5046 -3.5085 2.9366 30 1 0.5648 -5.0905 4.0507 31 1 2.0778 -5.7907 3.4272 32 1 0.7880 -7.0854 1.7512 33 1 -0.7250 -6.3851 2.3747 34 1 0.6577 -7.5805 4.5283 35 1 0.5475 -10.2655 4.7460 36 1 -0.9611 -9.5603 5.3748 37 1 0.3415 -12.3444 3.0577 38 1 -1.6644 -13.9478 2.5127 39 1 -3.2442 -10.6472 4.5796 40 1 3.1446 -4.1414 1.5142 41 1 2.3440 -5.5492 0.7840 42 1 1.0845 -4.1740 -0.7335 43 1 2.7474 -3.5295 -0.7688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161989422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:21 Heat of formation + Delta-G solvation = 45.234949 kcal Electronic energy + Delta-G solvation = -23717.389832 eV Core-core repulsion = 20184.836105 eV Total energy + Delta-G solvation = -3532.553726 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97246 -40.70807 -39.46593 -36.80640 -35.16497 -34.91540 -33.18676 -31.52724 -30.67747 -30.29414 -28.63402 -26.88225 -24.70192 -24.01118 -22.55865 -22.38537 -22.27690 -21.45512 -19.47993 -18.71189 -18.36652 -17.56617 -17.05971 -16.76561 -16.62114 -15.81697 -15.74747 -15.64836 -15.27358 -15.15204 -14.91817 -14.79498 -14.50753 -14.32688 -14.06563 -13.91634 -13.40659 -13.29682 -13.14249 -12.85224 -12.80209 -12.58840 -12.37265 -12.18297 -11.90632 -11.69121 -11.51230 -11.20113 -10.96710 -10.69862 -10.48242 -10.18588 -9.49718 -9.41663 -8.76787 -7.89612 -5.31863 1.02528 1.41790 1.45840 1.46561 1.47459 1.57046 1.77468 2.23971 2.33564 2.49856 3.27243 3.60831 3.68227 3.84778 3.89000 3.96379 4.01687 4.11703 4.12809 4.20820 4.28592 4.54100 4.57581 4.59600 4.68169 4.78494 4.85056 4.90033 4.96733 5.07282 5.16930 5.22723 5.28923 5.35243 5.40659 5.49229 5.59538 5.82905 5.87117 6.20772 6.28047 6.32187 6.50285 7.11642 7.14451 7.17231 7.81742 8.36483 9.19039 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.042859 B = 0.002127 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.151939 B =13159.229867 C =13229.139521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.206 3.794 11 C -0.175 4.175 12 C -0.121 4.121 13 C -0.077 4.077 14 C 0.133 3.867 15 N -0.706 5.706 16 C 0.489 3.511 17 O -0.583 6.583 18 C 0.092 3.908 19 N -0.448 5.448 20 C -0.044 4.044 21 C -0.062 4.062 22 N -0.540 5.540 23 C 0.181 3.819 24 C -0.087 4.087 25 C 0.134 3.866 26 H 0.249 0.751 27 H 0.000 1.000 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.424 0.576 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.200 0.800 38 H 0.178 0.822 39 H 0.226 0.774 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -21.075 15.993 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.195 4.195 12 C -0.122 4.122 13 C -0.114 4.114 14 C 0.009 3.991 15 N -0.359 5.359 16 C 0.275 3.725 17 O -0.462 6.462 18 C -0.034 4.034 19 N -0.130 5.130 20 C -0.177 4.177 21 C -0.208 4.208 22 N -0.259 5.259 23 C -0.102 4.102 24 C -0.125 4.125 25 C 0.008 3.992 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.217 0.783 38 H 0.195 0.805 39 H 0.242 0.758 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.033 0.967 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.960 -21.287 15.215 26.332 hybrid contribution 0.746 1.760 -0.360 1.945 sum 3.707 -19.527 14.855 24.813 Atomic orbital electron populations 1.70204 1.06683 1.25788 1.56221 1.25821 0.96203 1.01594 1.01683 0.85192 0.78136 0.79357 0.77357 1.21380 1.21849 1.19212 1.19541 0.92582 0.85564 1.41029 0.91067 1.44445 1.29484 1.02096 1.57973 1.19356 0.87172 0.95406 0.90021 1.22828 0.99561 0.97177 0.99905 1.20610 0.97012 0.96365 0.98241 1.20800 1.01956 0.92142 0.96548 1.21141 0.99795 0.87286 0.90901 1.45777 1.55815 1.15282 1.19067 1.21477 0.77965 0.83965 0.89080 1.90822 1.47037 1.80267 1.28050 1.22040 1.02375 0.83113 0.95828 1.45192 1.08423 1.16637 1.42794 1.23135 1.01729 0.89539 1.03256 1.22644 0.88555 1.02888 1.06759 1.70224 1.30628 1.09455 1.15626 1.25467 0.84070 0.97102 1.03520 1.20741 0.96910 0.99928 0.94937 1.21200 0.96960 0.86119 0.94885 0.94149 0.98264 0.92677 0.86747 0.89453 0.88487 0.92611 0.93623 0.73810 0.82042 0.81796 0.78342 0.80457 0.75803 0.91133 0.89642 0.96676 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 11.08 21.65 0.24 -56.43 16 2 C -0.06 -3.31 5.01 84.86 0.42 -2.89 16 3 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.26 -14.33 9.71 84.03 0.82 -13.51 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 9 N -0.62 -31.64 3.01 -703.02 -2.11 -33.75 16 10 C 0.21 10.23 5.23 85.42 0.45 10.67 16 11 C -0.18 -6.49 9.47 27.11 0.26 -6.24 16 12 C -0.12 -3.68 5.11 -15.14 -0.08 -3.76 16 13 C -0.08 -1.43 5.32 29.85 0.16 -1.27 16 14 C 0.13 2.62 5.66 86.38 0.49 3.11 16 15 N -0.71 -8.19 5.56 -463.06 -2.57 -10.77 16 16 C 0.49 7.63 7.90 87.66 0.69 8.32 16 17 O -0.58 -16.91 16.43 -3.03 -0.05 -16.96 16 18 C 0.09 0.53 6.63 85.64 0.57 1.10 16 19 N -0.45 -6.68 2.24 -533.12 -1.19 -7.87 16 20 C -0.04 -0.72 11.58 83.09 0.96 0.24 16 21 C -0.06 -1.32 11.87 83.52 0.99 -0.33 16 22 N -0.54 -13.65 11.25 -200.30 -2.25 -15.90 16 23 C 0.18 3.44 12.56 180.26 2.26 5.71 16 24 C -0.09 -2.73 5.95 29.71 0.18 -2.55 16 25 C 0.13 5.56 6.59 86.31 0.57 6.13 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 27 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.05 3.07 6.41 -2.39 -0.02 3.06 16 29 H 0.11 3.63 7.73 -2.91 -0.02 3.61 16 30 H 0.09 1.37 7.78 -2.39 -0.02 1.36 16 31 H 0.10 1.35 8.11 -2.38 -0.02 1.33 16 32 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.42 1.18 8.47 -92.71 -0.79 0.40 16 35 H 0.16 -0.27 8.14 -2.38 -0.02 -0.29 16 36 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 42 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.06 2.36 7.96 -2.39 -0.02 2.34 16 Total: -1.00 -85.26 360.94 3.05 -82.22 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.22 Total: 7.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 8.74 Total: 4.73 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.89 Total: -124.72 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -85.26 3.05 -82.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161989422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.454 kcal (2) G-P(sol) polarization free energy of solvation -85.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds