Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31914 * 119.04090 * 2 1 4 4 C 1.32176 * 121.03681 * 180.02562 * 3 2 1 5 5 C 1.38809 * 119.14349 * 359.97438 * 4 3 2 6 6 C 1.39498 * 118.26428 * 359.97438 * 5 4 3 7 7 C 1.48450 * 120.54877 * 179.97438 * 6 5 4 8 8 O 1.21484 * 119.99643 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00289 * 179.72266 * 7 6 5 10 10 C 1.46492 * 120.00301 * 180.27365 * 9 7 6 11 11 C 1.52999 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47271 * 175.02458 * 11 10 9 13 13 C 1.53004 * 115.54879 * 278.03108 * 12 11 10 14 14 N 1.46495 * 109.46858 * 303.89844 * 13 12 11 15 15 C 1.36942 * 119.99774 * 175.59390 * 14 13 12 16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00446 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00073 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46821 * 59.99882 * 19 17 15 21 21 H 1.48491 * 109.47199 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47047 * 300.00312 * 19 17 15 23 23 C 1.52998 * 117.50095 * 132.32140 * 12 11 10 24 24 C 1.52996 * 60.00123 * 252.51200 * 23 12 11 25 25 N 1.31554 * 119.04240 * 180.25001 * 2 1 3 26 26 H 1.08997 * 109.47343 * 90.00492 * 1 2 3 27 27 H 1.09011 * 109.46836 * 210.00615 * 1 2 3 28 28 H 1.09000 * 109.47420 * 329.99754 * 1 2 3 29 29 H 1.07993 * 120.42834 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.86642 * 180.02562 * 5 4 3 31 31 H 0.97003 * 119.99490 * 0.27380 * 9 7 6 32 32 H 1.09003 * 109.47521 * 300.00244 * 10 9 7 33 33 H 1.08996 * 109.47526 * 60.00078 * 10 9 7 34 34 H 1.08999 * 109.47287 * 295.01984 * 11 10 9 35 35 H 1.09000 * 109.47339 * 55.02370 * 11 10 9 36 36 H 1.08999 * 109.46845 * 63.89720 * 13 12 11 37 37 H 1.09002 * 109.46865 * 183.89391 * 13 12 11 38 38 H 0.97001 * 120.00478 * 355.59263 * 14 13 12 39 39 H 0.96994 * 120.00757 * 180.02562 * 18 17 15 40 40 H 1.08998 * 117.49650 * 0.02562 * 23 12 11 41 41 H 1.09002 * 117.50182 * 145.02280 * 23 12 11 42 42 H 1.08998 * 117.49996 * 252.50867 * 24 23 12 43 43 H 1.08999 * 117.50255 * 107.48994 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1993 -0.0005 5 6 4.1861 0.0112 -0.0005 6 6 3.4761 -1.1895 0.0006 7 6 4.1925 -2.4897 0.0001 8 8 5.4071 -2.5139 -0.0018 9 7 3.4955 -3.6432 0.0068 10 6 4.2025 -4.9263 0.0123 11 6 3.1852 -6.0691 0.0188 12 6 3.9194 -7.4061 -0.1006 13 6 4.3150 -7.8173 -1.5202 14 7 3.1230 -7.8415 -2.3716 15 6 3.2440 -8.0955 -3.7118 16 1 4.2181 -8.2775 -4.1411 17 6 2.1147 -8.1179 -4.5186 18 7 0.9275 -7.8955 -3.9955 19 14 2.2797 -8.4636 -6.3469 20 1 2.8883 -9.8037 -6.5442 21 1 0.9368 -8.4323 -6.9798 22 1 3.1453 -7.4303 -6.9699 23 6 3.5249 -8.5181 0.8735 24 6 4.8643 -7.7972 1.0374 25 7 2.1456 -1.1501 -0.0050 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5140 28 1 -0.3634 0.8899 0.5139 29 1 3.9825 2.1490 -0.0001 30 1 5.2661 0.0164 -0.0005 31 1 2.5256 -3.6238 0.0079 32 1 4.8268 -5.0010 -0.8781 33 1 4.8290 -4.9921 0.9018 34 1 2.6198 -6.0470 0.9504 35 1 2.5028 -5.9529 -0.8232 36 1 5.0322 -7.1003 -1.9195 37 1 4.7664 -8.8092 -1.4987 38 1 2.2482 -7.6776 -1.9860 39 1 0.1383 -7.9115 -4.5591 40 1 2.7420 -8.2973 1.5990 41 1 3.5470 -9.5430 0.5030 42 1 5.7677 -8.3477 0.7748 43 1 4.9630 -7.1019 1.8711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168191473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = 21.516066 kcal Electronic energy + Delta-G solvation = -23974.052047 eV Core-core repulsion = 20440.469793 eV Total energy + Delta-G solvation = -3533.582254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.35505 -40.64234 -39.52441 -36.24761 -35.81759 -34.96617 -34.28257 -32.79554 -31.20174 -29.49430 -27.88415 -26.87301 -24.76794 -24.61087 -23.80511 -22.94293 -21.98955 -20.17676 -19.35195 -18.91415 -18.57392 -17.12659 -16.99948 -16.71120 -16.55429 -16.33856 -16.04066 -15.95168 -15.56870 -15.14834 -14.83948 -14.73702 -14.39364 -14.22292 -13.92484 -13.50952 -13.24239 -13.19036 -13.03307 -12.77048 -12.60790 -12.28537 -12.16920 -12.07677 -11.99546 -11.95131 -11.90353 -11.59948 -11.09530 -10.92014 -10.63127 -10.58680 -10.43994 -10.22701 -8.97152 -7.94672 -5.22264 -0.67137 -0.16147 1.45690 1.48218 1.54316 1.54749 1.81757 2.54139 2.66188 2.68635 2.89188 2.99425 3.38302 3.46204 3.69624 3.81927 3.83570 3.95178 3.97770 4.06557 4.23384 4.36961 4.37450 4.45619 4.47285 4.60663 4.71375 4.81652 4.84660 4.92150 4.96443 4.99191 5.07970 5.14372 5.24230 5.29692 5.31800 5.34212 5.37203 5.48608 5.70437 6.27571 6.28557 6.82700 6.93586 7.34817 8.11235 8.36716 9.28325 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.003424 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.675523 B = 8175.242882 C = 9557.362964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.305 3.695 3 N -0.516 5.516 4 C 0.164 3.836 5 C -0.178 4.178 6 C 0.115 3.885 7 C 0.564 3.436 8 O -0.557 6.557 9 N -0.696 5.696 10 C 0.132 3.868 11 C -0.079 4.079 12 C -0.141 4.141 13 C 0.188 3.812 14 N -0.736 5.736 15 C -0.249 4.249 16 H 0.070 0.930 17 C -0.070 4.070 18 N -0.965 5.965 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.281 1.281 23 C -0.164 4.164 24 C -0.149 4.149 25 N -0.511 5.511 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.220 0.780 30 H 0.172 0.828 31 H 0.417 0.583 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 16.244 14.392 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.231 5.231 4 C -0.004 4.004 5 C -0.201 4.201 6 C -0.032 4.032 7 C 0.348 3.652 8 O -0.435 6.435 9 N -0.346 5.346 10 C 0.009 3.991 11 C -0.117 4.117 12 C -0.142 4.142 13 C 0.062 3.938 14 N -0.379 5.379 15 C -0.381 4.381 16 H 0.088 0.912 17 C -0.262 4.262 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.201 4.201 24 C -0.186 4.186 25 N -0.229 5.229 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.237 0.763 30 H 0.190 0.810 31 H 0.254 0.746 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.210 0.790 39 H 0.060 0.940 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.026 16.085 14.229 21.687 hybrid contribution 0.207 -0.444 -1.285 1.376 sum 3.233 15.640 12.943 20.557 Atomic orbital electron populations 1.20733 0.83198 1.05426 1.04985 1.23882 0.99677 0.82696 0.89945 1.68336 1.11337 1.30095 1.13351 1.24067 0.88880 0.99701 0.87719 1.23198 1.04593 0.92668 0.99646 1.21576 0.90440 0.94669 0.96480 1.18095 0.86376 0.83766 0.76919 1.90768 1.13771 1.87468 1.51464 1.45896 1.11696 1.05277 1.71776 1.21339 0.94997 0.80749 1.02027 1.21112 0.96792 0.90934 1.02877 1.21386 1.05417 0.96000 0.91397 1.20230 0.88967 0.96464 0.88163 1.42447 1.05045 1.85630 1.04777 1.19573 0.93229 1.39237 0.86029 0.91206 1.25473 0.95121 1.03510 1.02125 1.69790 0.97779 1.57990 1.35957 0.85285 0.76242 0.78160 0.80516 1.20450 1.21878 1.20778 1.23057 0.99279 0.96445 1.01288 1.23063 0.93817 1.03043 0.98721 1.68182 1.08641 1.32184 1.13932 0.88647 0.88807 0.87878 0.76342 0.81017 0.74602 0.93231 0.89925 0.89269 0.92372 0.96580 0.96700 0.79040 0.93985 0.87435 0.89820 0.88318 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.31 71.23 0.73 -0.50 16 2 C 0.30 6.43 7.64 138.78 1.06 7.49 16 3 N -0.52 -9.99 10.32 -187.88 -1.94 -11.92 16 4 C 0.16 2.49 11.31 84.78 0.96 3.45 16 5 C -0.18 -3.45 9.72 22.71 0.22 -3.23 16 6 C 0.12 2.92 6.79 41.98 0.29 3.20 16 7 C 0.56 16.69 7.83 86.97 0.68 17.37 16 8 O -0.56 -19.03 16.43 -3.67 -0.06 -19.09 16 9 N -0.70 -19.54 5.55 -465.40 -2.58 -22.12 16 10 C 0.13 3.80 5.49 86.38 0.47 4.28 16 11 C -0.08 -2.33 5.20 30.59 0.16 -2.17 16 12 C -0.14 -4.39 1.65 -52.18 -0.09 -4.48 16 13 C 0.19 7.71 6.15 86.38 0.53 8.24 16 14 N -0.74 -37.71 5.23 -343.46 -1.80 -39.50 16 15 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 16 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 18 N -0.96 -58.93 13.06 21.65 0.28 -58.65 16 19 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 C -0.16 -4.41 9.87 30.59 0.30 -4.11 16 24 C -0.15 -3.54 9.57 30.59 0.29 -3.24 16 25 N -0.51 -12.58 9.60 -177.09 -1.70 -14.28 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.17 2.86 7.74 -2.91 -0.02 2.84 16 31 H 0.42 10.90 7.86 -92.71 -0.73 10.17 16 32 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 33 H 0.08 2.14 7.72 -2.39 -0.02 2.13 16 34 H 0.09 2.15 7.93 -2.39 -0.02 2.13 16 35 H 0.06 2.12 6.94 -2.39 -0.02 2.10 16 36 H 0.02 0.69 7.96 -2.39 -0.02 0.67 16 37 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 38 H 0.38 20.27 6.80 -92.71 -0.63 19.64 16 39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.11 2.51 8.07 -2.39 -0.02 2.49 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.11 2.21 7.90 -2.39 -0.02 2.19 16 Total: -1.00 -72.25 367.95 0.83 -71.42 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.32 Total: 35.99 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.92 Total: 9.39 kcal Atomic # 7 Polarization: -138.74 SS G_CDS: -7.73 Total: -146.47 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.25 0.83 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168191473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.932 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds